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Items: 1 to 50 of 324


NetPyNE, a tool for data-driven multiscale modeling of brain circuits.

Dura-Bernal S, Suter BA, Gleeson P, Cantarelli M, Quintana A, Rodriguez F, Kedziora DJ, Chadderdon GL, Kerr CC, Neymotin SA, McDougal RA, Hines M, Shepherd GM, Lytton WW.

Elife. 2019 Apr 26;8. pii: e44494. doi: 10.7554/eLife.44494.


Nongenetic optical neuromodulation with silicon-based materials.

Jiang Y, Parameswaran R, Li X, Carvalho-de-Souza JL, Gao X, Meng L, Bezanilla F, Shepherd GMG, Tian B.

Nat Protoc. 2019 May;14(5):1339-1376. doi: 10.1038/s41596-019-0135-9. Epub 2019 Apr 12.


Neuron Names: A Gene- and Property-Based Name Format, With Special Reference to Cortical Neurons.

Shepherd GM, Marenco L, Hines ML, Migliore M, McDougal RA, Carnevale NT, Newton AJH, Surles-Zeigler M, Ascoli GA.

Front Neuroanat. 2019 Mar 21;13:25. doi: 10.3389/fnana.2019.00025. eCollection 2019.


Rational design of silicon structures for optically controlled multiscale biointerfaces.

Jiang Y, Li X, Liu B, Yi J, Fang Y, Shi F, Gao X, Sudzilovsky E, Parameswaran R, Koehler K, Nair V, Yue J, Guo K, Fang Y, Tsai HM, Freyermuth G, Wong RCS, Kao CM, Chen CT, Nicholls AW, Wu X, Shepherd GMG, Tian B.

Nat Biomed Eng. 2018 Jul;2(7):508-521. doi: 10.1038/s41551-018-0230-1. Epub 2018 Apr 30.


Long-range inhibitory intersection of a retrosplenial thalamocortical circuit by apical tuft-targeting CA1 neurons.

Yamawaki N, Li X, Lambot L, Ren LY, Radulovic J, Shepherd GMG.

Nat Neurosci. 2019 Apr;22(4):618-626. doi: 10.1038/s41593-019-0355-x. Epub 2019 Mar 11.


Automated Metadata Suggestion During Repository Submission.

McDougal RA, Dalal I, Morse TM, Shepherd GM.

Neuroinformatics. 2019 Jul;17(3):361-371. doi: 10.1007/s12021-018-9403-z.


Corrigendum: Scaling of Optogenetically Evoked Signaling in a Higher-Order Corticocortical Pathway in the Anesthetized Mouse.

Li X, Yamawaki N, Barrett JM, Körding KP, Shepherd GMG.

Front Syst Neurosci. 2018 Oct 18;12:50. doi: 10.3389/fnsys.2018.00050. eCollection 2018.


Neuroscience without borders: Preserving the history of neuroscience.

Lorusso L, Piccolino M, Motta S, Gasparello A, Barbara JG, Bossi-Régnier L, Shepherd GM, Swanson L, Magistretti P, Everitt B, Molnár Z, Brown RE.

Eur J Neurosci. 2018 Sep;48(5):2099-2109. doi: 10.1111/ejn.14101. Epub 2018 Sep 9.


Differential Contributions of Glutamatergic Hippocampal→Retrosplenial Cortical Projections to the Formation and Persistence of Context Memories.

Yamawaki N, Corcoran KA, Guedea AL, Shepherd GMG, Radulovic J.

Cereb Cortex. 2019 Jun 1;29(6):2728-2736. doi: 10.1093/cercor/bhy142.


Scaling of Optogenetically Evoked Signaling in a Higher-Order Corticocortical Pathway in the Anesthetized Mouse.

Li X, Yamawaki N, Barrett JM, Körding KP, Shepherd GMG.

Front Syst Neurosci. 2018 May 15;12:16. doi: 10.3389/fnsys.2018.00016. eCollection 2018. Erratum in: Front Syst Neurosci. 2018 Oct 18;12:50.


Wilfrid Rall.

Shepherd GM.

Neuroinformatics. 2018 Apr;16(2):151-152. doi: 10.1007/s12021-018-9378-9. No abstract available.


Parallel odor processing by mitral and middle tufted cells in the olfactory bulb.

Cavarretta F, Burton SD, Igarashi KM, Shepherd GM, Hines ML, Migliore M.

Sci Rep. 2018 May 16;8(1):7625. doi: 10.1038/s41598-018-25740-x.


Spontaneous activity forms a foundation for odor-evoked activation maps in the rat olfactory bulb.

Thompson GJ, Sanganahalli BG, Baker KL, Herman P, Shepherd GM, Verhagen JV, Hyder F.

Neuroimage. 2018 May 15;172:586-596. doi: 10.1016/j.neuroimage.2018.01.051. Epub 2018 Jan 31.


Neocortical Lamination: Insights from Neuron Types and Evolutionary Precursors.

Shepherd GM, Rowe TB.

Front Neuroanat. 2017 Nov 7;11:100. doi: 10.3389/fnana.2017.00100. eCollection 2017.


Respiration Gates Sensory Input Responses in the Mitral Cell Layer of the Olfactory Bulb.

Short SM, Morse TM, McTavish TS, Shepherd GM, Verhagen JV.

PLoS One. 2016 Dec 22;11(12):e0168356. doi: 10.1371/journal.pone.0168356. eCollection 2016.


Optimizing computer models of corticospinal neurons to replicate in vitro dynamics.

Neymotin SA, Suter BA, Dura-Bernal S, Shepherd GM, Migliore M, Lytton WW.

J Neurophysiol. 2017 Jan 1;117(1):148-162. doi: 10.1152/jn.00570.2016. Epub 2016 Oct 19.


Combining Optogenetics and Electrophysiology to Analyze Projection Neuron Circuits.

Yamawaki N, Suter BA, Wickersham IR, Shepherd GM.

Cold Spring Harb Protoc. 2016 Oct 3;2016(10). doi: 10.1101/pdb.prot090084.


Twenty years of ModelDB and beyond: building essential modeling tools for the future of neuroscience.

McDougal RA, Morse TM, Carnevale T, Marenco L, Wang R, Migliore M, Miller PL, Shepherd GM, Hines ML.

J Comput Neurosci. 2017 Feb;42(1):1-10. doi: 10.1007/s10827-016-0623-7. Epub 2016 Sep 15. Review.


A Corticocortical Circuit Directly Links Retrosplenial Cortex to M2 in the Mouse.

Yamawaki N, Radulovic J, Shepherd GM.

J Neurosci. 2016 Sep 7;36(36):9365-74. doi: 10.1523/JNEUROSCI.1099-16.2016.


Glomerular and Mitral-Granule Cell Microcircuits Coordinate Temporal and Spatial Information Processing in the Olfactory Bulb.

Cavarretta F, Marasco A, Hines ML, Shepherd GM, Migliore M.

Front Comput Neurosci. 2016 Jul 14;10:67. doi: 10.3389/fncom.2016.00067. eCollection 2016.


Comments and General Discussion on "The Anatomical Problem Posed by Brain Complexity and Size: A Potential Solution".

DeFelipe J, Douglas RJ, Hill SL, Lein ES, Martin KA, Rockland KS, Segev I, Shepherd GM, Tamás G.

Front Neuroanat. 2016 Jun 10;10:60. doi: 10.3389/fnana.2016.00060. eCollection 2016. No abstract available.


Comparison of glomerular activity patterns by fMRI and wide-field calcium imaging: Implications for principles underlying odor mapping.

Sanganahalli BG, Rebello MR, Herman P, Papademetris X, Shepherd GM, Verhagen JV, Hyder F.

Neuroimage. 2016 Feb 1;126:208-18. doi: 10.1016/j.neuroimage.2015.11.048. Epub 2015 Nov 26.


Optimal directional volatile transport in retronasal olfaction.

Ni R, Michalski MH, Brown E, Doan N, Zinter J, Ouellette NT, Shepherd GM.

Proc Natl Acad Sci U S A. 2015 Nov 24;112(47):14700-4. doi: 10.1073/pnas.1511495112. Epub 2015 Nov 9.


Reduction of thalamic and cortical Ih by deletion of TRIP8b produces a mouse model of human absence epilepsy.

Heuermann RJ, Jaramillo TC, Ying SW, Suter BA, Lyman KA, Han Y, Lewis AS, Hampton TG, Shepherd GMG, Goldstein PA, Chetkovich DM.

Neurobiol Dis. 2016 Jan;85:81-92. doi: 10.1016/j.nbd.2015.10.005. Epub 2015 Oct 14.


GABAergic mechanisms regulated by miR-33 encode state-dependent fear.

Jovasevic V, Corcoran KA, Leaderbrand K, Yamawaki N, Guedea AL, Chen HJ, Shepherd GM, Radulovic J.

Nat Neurosci. 2015 Sep;18(9):1265-71. doi: 10.1038/nn.4084. Epub 2015 Aug 17.


3D-printer visualization of neuron models.

McDougal RA, Shepherd GM.

Front Neuroinform. 2015 Jun 30;9:18. doi: 10.3389/fninf.2015.00018. eCollection 2015.


Synaptic clusters function as odor operators in the olfactory bulb.

Migliore M, Cavarretta F, Marasco A, Tulumello E, Hines ML, Shepherd GM.

Proc Natl Acad Sci U S A. 2015 Jul 7;112(27):8499-504. doi: 10.1073/pnas.1502513112. Epub 2015 Jun 22.


Role of ortho-retronasal olfaction in mammalian cortical evolution.

Rowe TB, Shepherd GM.

J Comp Neurol. 2016 Feb 15;524(3):471-95. doi: 10.1002/cne.23802. Epub 2015 Jun 11. Review.


ModelView for ModelDB: Online Presentation of Model Structure.

McDougal RA, Morse TM, Hines ML, Shepherd GM.

Neuroinformatics. 2015 Oct;13(4):459-70. doi: 10.1007/s12021-015-9269-2.


Cell-specific activity-dependent fractionation of layer 2/3→5B excitatory signaling in mouse auditory cortex.

Joshi A, Middleton JW, Anderson CT, Borges K, Suter BA, Shepherd GM, Tzounopoulos T.

J Neurosci. 2015 Feb 18;35(7):3112-23. doi: 10.1523/JNEUROSCI.0836-14.2015.


Reciprocal interareal connections to corticospinal neurons in mouse M1 and S2.

Suter BA, Shepherd GM.

J Neurosci. 2015 Feb 18;35(7):2959-74. doi: 10.1523/JNEUROSCI.4287-14.2015.


Synaptic circuit organization of motor corticothalamic neurons.

Yamawaki N, Shepherd GM.

J Neurosci. 2015 Feb 4;35(5):2293-307. doi: 10.1523/JNEUROSCI.4023-14.2015.


The neocortical circuit: themes and variations.

Harris KD, Shepherd GM.

Nat Neurosci. 2015 Feb;18(2):170-81. doi: 10.1038/nn.3917. Epub 2015 Jan 27. Review.


Neurophotonics applications to motor cortex research.

Suter BA, Yamawaki N, Borges K, Li X, Kiritani T, Hooks BM, Shepherd GM.

Neurophotonics. 2014 Jul 1;1(1). pii: 011008.


A genuine layer 4 in motor cortex with prototypical synaptic circuit connectivity.

Yamawaki N, Borges K, Suter BA, Harris KD, Shepherd GM.

Elife. 2014 Dec 19;3:e05422. doi: 10.7554/eLife.05422.


Perception of odors linked to precise timing in the olfactory system.

Rebello MR, McTavish TS, Willhite DC, Short SM, Shepherd GM, Verhagen JV.

PLoS Biol. 2014 Dec 16;12(12):e1002021. doi: 10.1371/journal.pbio.1002021. eCollection 2014 Dec.


Sparse coding and lateral inhibition arising from balanced and unbalanced dendrodendritic excitation and inhibition.

Yu Y, Migliore M, Hines ML, Shepherd GM.

J Neurosci. 2014 Oct 8;34(41):13701-13. doi: 10.1523/JNEUROSCI.1834-14.2014.


Extending the NIF DISCO framework to automate complex workflow: coordinating the harvest and integration of data from diverse neuroscience information resources.

Marenco LN, Wang R, Bandrowski AE, Grethe JS, Shepherd GM, Miller PL.

Front Neuroinform. 2014 May 28;8:58. doi: 10.3389/fninf.2014.00058. eCollection 2014.


Distributed organization of a brain microcircuit analyzed by three-dimensional modeling: the olfactory bulb.

Migliore M, Cavarretta F, Hines ML, Shepherd GM.

Front Comput Neurosci. 2014 Apr 29;8:50. doi: 10.3389/fncom.2014.00050. eCollection 2014.


Motor cortex microcircuit simulation based on brain activity mapping.

Chadderdon GL, Mohan A, Suter BA, Neymotin SA, Kerr CC, Francis JT, Shepherd GM, Lytton WW.

Neural Comput. 2014 Jul;26(7):1239-62. doi: 10.1162/NECO_a_00602. Epub 2014 Apr 7.


Motor cortex microcircuits.

Brecht M, Hatsopoulos NG, Kaneko T, Shepherd GM.

Front Neural Circuits. 2013 Dec 12;7:196. doi: 10.3389/fncir.2013.00196. eCollection 2013. No abstract available.


Diversity and complexity in the pyramidal tract projectome.

Shepherd GM.

Nat Rev Neurosci. 2014 Jan;15(1):63. doi: 10.1038/nrn3469-c2. Epub 2013 Dec 4. No abstract available.


Functional neurology of a brain system: a 3D olfactory bulb model to process natural odorants.

Migliore M, Cavarretta F, Hines ML, Shepherd GM.

Funct Neurol. 2013 Jul-Sep;28(3):241-3. doi: 10.11138/FNeur/2013.28.3.241.


Convergent cortical innervation of striatal projection neurons.

Kress GJ, Yamawaki N, Wokosin DL, Wickersham IR, Shepherd GM, Surmeier DJ.

Nat Neurosci. 2013 Jun;16(6):665-7. doi: 10.1038/nn.3397. Epub 2013 May 12.


eGFP expression under UCHL1 promoter genetically labels corticospinal motor neurons and a subpopulation of degeneration-resistant spinal motor neurons in an ALS mouse model.

Yasvoina MV, Genç B, Jara JH, Sheets PL, Quinlan KA, Milosevic A, Shepherd GM, Heckman CJ, Özdinler PH.

J Neurosci. 2013 May 1;33(18):7890-904. doi: 10.1523/JNEUROSCI.2787-12.2013.


Databases in SenseLab for the genomics, proteomics, and function of olfactory receptors.

Marenco LN, Bahl G, Hyland L, Shi J, Wang R, Lai PC, Miller PL, Shepherd GM, Crasto CJ.

Methods Mol Biol. 2013;1003:3-22. doi: 10.1007/978-1-62703-377-0_1.


Sparse distributed representation of odors in a large-scale olfactory bulb circuit.

Yu Y, McTavish TS, Hines ML, Shepherd GM, Valenti C, Migliore M.

PLoS Comput Biol. 2013;9(3):e1003014. doi: 10.1371/journal.pcbi.1003014. Epub 2013 Mar 28.


Corticostriatal connectivity and its role in disease.

Shepherd GM.

Nat Rev Neurosci. 2013 Apr;14(4):278-91. doi: 10.1038/nrn3469. Review.


New insights into the classification and nomenclature of cortical GABAergic interneurons.

DeFelipe J, López-Cruz PL, Benavides-Piccione R, Bielza C, Larrañaga P, Anderson S, Burkhalter A, Cauli B, Fairén A, Feldmeyer D, Fishell G, Fitzpatrick D, Freund TF, González-Burgos G, Hestrin S, Hill S, Hof PR, Huang J, Jones EG, Kawaguchi Y, Kisvárday Z, Kubota Y, Lewis DA, Marín O, Markram H, McBain CJ, Meyer HS, Monyer H, Nelson SB, Rockland K, Rossier J, Rubenstein JL, Rudy B, Scanziani M, Shepherd GM, Sherwood CC, Staiger JF, Tamás G, Thomson A, Wang Y, Yuste R, Ascoli GA.

Nat Rev Neurosci. 2013 Mar;14(3):202-16. doi: 10.1038/nrn3444. Epub 2013 Feb 6. Review.

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