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Items: 49

1.

Distribution shapes govern the discovery of predictive models for gene regulation.

Munsky B, Li G, Fox ZR, Shepherd DP, Neuert G.

Proc Natl Acad Sci U S A. 2018 Jul 17;115(29):7533-7538. doi: 10.1073/pnas.1804060115. Epub 2018 Jun 29.

2.

295-kW peak power picosecond pulses from a thulium-doped-fiber MOPA and the generation of watt-level >2.5-octave supercontinuum extending up to 5 μm.

Liang S, Xu L, Fu Q, Jung Y, Shepherd DP, Richardson DJ, Alam SU.

Opt Express. 2018 Mar 19;26(6):6490-6498. doi: 10.1364/OE.26.006490.

PMID:
29609337
3.

Thulium-fiber-laser-pumped, high-peak-power, picosecond, mid-infrared orientation-patterned GaAs optical parametric generator and amplifier.

Xu L, Fu Q, Liang S, Shepherd DP, Richardson DJ, Alam SU.

Opt Lett. 2017 Oct 1;42(19):4036-4039. doi: 10.1364/OL.42.004036.

PMID:
28957191
4.

Automatic and adaptive heterogeneous refractive index compensation for light-sheet microscopy.

Ryan DP, Gould EA, Seedorf GJ, Masihzadeh O, Abman SH, Vijayaraghavan S, Macklin WB, Restrepo D, Shepherd DP.

Nat Commun. 2017 Sep 20;8(1):612. doi: 10.1038/s41467-017-00514-7.

5.

Quantifying three-dimensional rodent retina vascular development using optical tissue clearing and light-sheet microscopy.

Singh JN, Nowlin TM, Seedorf GJ, Abman SH, Shepherd DP.

J Biomed Opt. 2017 Jul 1;22(7):76011. doi: 10.1117/1.JBO.22.7.076011.

6.

Raman-shifted wavelength-selectable pulsed fiber laser with high repetition rate and high pulse energy in the visible.

Xu L, Alam S, Kang Q, Shepherd DP, Richardson DJ.

Opt Express. 2017 Jan 9;25(1):351-356. doi: 10.1364/OE.25.000351.

PMID:
28085829
7.

Pulsed laser deposited diode-pumped 7.4 W Yb:Lu₂O₃ planar waveguide laser.

Parsonage TL, Beecher SJ, Choudhary A, Grant-Jacob JA, Hua P, Mackenzie JI, Shepherd DP, Eason RW.

Opt Express. 2015 Dec 14;23(25):31691-7. doi: 10.1364/OE.23.031691.

PMID:
26698962
8.

Broadband telecom to mid-infrared supercontinuum generation in a dispersion-engineered silicon germanium waveguide.

Ettabib MA, Xu L, Bogris A, Kapsalis A, Belal M, Lorent E, Labeye P, Nicoletti S, Hammani K, Syvridis D, Shepherd DP, Price JH, Richardson DJ, Petropoulos P.

Opt Lett. 2015 Sep 1;40(17):4118-21. doi: 10.1364/OL.40.004118.

PMID:
26368726
9.

Fiber-laser-pumped, high-energy, mid-IR, picosecond optical parametric oscillator with a high-harmonic cavity.

Xu L, Chan HY, Alam SU, Richardson DJ, Shepherd DP.

Opt Lett. 2015 Jul 15;40(14):3288-91. doi: 10.1364/OL.40.003288.

PMID:
26176451
10.

High-energy, near- and mid-IR picosecond pulses generated by a fiber-MOPA-pumped optical parametric generator and amplifier.

Xu L, Chan HY, Alam SU, Richardson DJ, Shepherd DP.

Opt Express. 2015 May 18;23(10):12613-8. doi: 10.1364/OE.23.012613.

PMID:
26074516
11.

456-mW graphene Q-switched Yb:yttria waveguide laser by evanescent-field interaction.

Choudhary A, Beecher SJ, Dhingra S, D'Urso B, Parsonage TL, Grant-Jacob JA, Hua P, Mackenzie JI, Eason RW, Shepherd DP.

Opt Lett. 2015 May 1;40(9):1912-5. doi: 10.1364/OL.40.001912.

PMID:
25927746
12.

Compact, high-pulse-energy, high-power, picosecond master oscillator power amplifier.

Chan HY, Alam SU, Xu L, Bateman J, Richardson DJ, Shepherd DP.

Opt Express. 2014 Sep 8;22(18):21938-43. doi: 10.1364/OE.22.021938.

PMID:
25321569
13.

Q-switched operation of a pulsed-laser-deposited Yb:Y(2)O(3) waveguide using graphene as a saturable absorber.

Choudhary A, Dhingra S, D'Urso B, Parsonage TL, Sloyan KA, Eason RW, Shepherd DP.

Opt Lett. 2014 Aug 1;39(15):4325-8. doi: 10.1364/OL.39.004325.

PMID:
25078168
14.

Generation of mode-locked optical pulses at 1035 nm from a fiber Bragg grating stabilized semiconductor laser diode.

Teh PS, Shaif-ul Alam, Shepherd DP, Richardson DJ.

Opt Express. 2014 Jun 2;22(11):13366-73. doi: 10.1364/OE.22.013366.

PMID:
24921530
15.

Fundamentally mode-locked, femtosecond waveguide oscillators with multi-gigahertz repetition frequencies up to 15 GHz.

Lagatsky AA, Choudhary A, Kannan P, Shepherd DP, Sibbett W, Brown CT.

Opt Express. 2013 Aug 26;21(17):19608-14. doi: 10.1364/OE.21.019608.

PMID:
24105507
16.

Counting small RNA in pathogenic bacteria.

Shepherd DP, Li N, Micheva-Viteva SN, Munsky B, Hong-Geller E, Werner JH.

Anal Chem. 2013 May 21;85(10):4938-43. doi: 10.1021/ac303792p. Epub 2013 Apr 25.

PMID:
23577771
17.

Ion-exchanged Tm3+:glass channel waveguide laser.

Choudhary A, Kannan P, Mackenzie JI, Feng X, Shepherd DP.

Opt Lett. 2013 Apr 1;38(7):1146-8. doi: 10.1364/OL.38.001146.

PMID:
23546272
18.

Diode-pumped femtosecond solid-state waveguide laser with a 4.9 GHz pulse repetition rate.

Choudhary A, Lagatsky AA, Kannan P, Sibbett W, Brown CT, Shepherd DP.

Opt Lett. 2012 Nov 1;37(21):4416-8. doi: 10.1364/OL.37.004416.

PMID:
23114314
19.

High-power, high repetition-rate, green-pumped, picosecond LBO optical parametric oscillator.

Kienle F, Teh PS, Lin D, Alam SU, Price JH, Hanna DC, Richardson DJ, Shepherd DP.

Opt Express. 2012 Mar 26;20(7):7008-14. doi: 10.1364/OE.20.007008.

PMID:
22453380
20.

Compact, high-pulse-energy, picosecond optical parametric oscillator.

Kienle F, Teh PS, Alam SU, Gawith CB, Hanna DC, Richardson DJ, Shepherd DP.

Opt Lett. 2010 Nov 1;35(21):3580-2. doi: 10.1364/OL.35.003580.

PMID:
21042356
21.

High-power, variable repetition rate, picosecond optical parametric oscillator pumped by an amplified gain-switched diode.

Kienle F, Chen KK, Alam SU, Gawith CB, Mackenzie JI, Hanna DC, Richardson DJ, Shepherd DP.

Opt Express. 2010 Apr 12;18(8):7602-10. doi: 10.1364/OE.18.007602.

PMID:
20588599
22.

High fidelity femtosecond pulses from an ultrafast fiber laser system via adaptive amplitude and phase pre-shaping.

Prawiharjo J, Daga NK, Geng R, Price JH, Hanna DC, Richardson DJ, Shepherd DP.

Opt Express. 2008 Sep 15;16(19):15074-89.

PMID:
18795045
23.

High energy femtosecond fiber chirped pulse amplification system with adaptive phase control.

He F, Hung HS, Price JH, Daga NK, Naz N, Prawiharjo J, Hanna DC, Shepherd DP, Richardson DJ, Dawson JW, Siders CW, Barty CP.

Opt Express. 2008 Apr 14;16(8):5813-21.

PMID:
18542692
24.

900-nm Nd:Ti:LiNbO(3) waveguide laser.

Brown CT, Amin J, Shepherd DP, Tropper AC, Hempstead M, Almeida JM.

Opt Lett. 1997 Dec 1;22(23):1778-80.

PMID:
18188363
25.

Diode-bar end-pumped high-power Nd:Y(3)Al(5)O(12) planar waveguide laser.

Bonner CL, Brown CT, Shepherd DP, Clarkson WA, Tropper AC, Hanna DC, Ferrand B.

Opt Lett. 1998 Jun 15;23(12):942-4.

PMID:
18087391
26.

High-phase-conjugate reflectivity (<800%) obtained by degenerate four-wave mixing in a continuous-wave diode-side-pumped Nd:YVO(4) amplifier.

Mailis S, Hendricks J, Shepherd DP, Tropper AC, Moore N, Eason RW, Crofts GJ, Trew M, Damzen MJ.

Opt Lett. 1999 Jul 15;24(14):972-4.

PMID:
18073913
27.

Second-harmonic generation in a direct-bonded periodically poled LiNbO(3) buried waveguide.

Gawith CB, Shepherd DP, Abernethy JA, Hanna DC, Ross GW, Smith PG.

Opt Lett. 1999 Apr 1;24(7):481-3.

PMID:
18071546
28.

Ion-exchanged tapered-waveguide laser in neodymium-doped BK7 glass.

Hettrick SJ, Mackenzie JI, Harris RD, Wilkinson JS, Shepherd DP, Tropper AC.

Opt Lett. 2000 Oct 1;25(19):1433-5.

PMID:
18066239
29.

Multiwatt continuous-wave adaptive laser resonator.

Trew M, Crofts GJ, Damzen MJ, Hendricks J, Mailis S, Shepherd DP, Tropper AC, Eason RW.

Opt Lett. 2000 Sep 15;25(18):1346-8.

PMID:
18066212
30.

Continuous-wave and passively Q-switched cladding-pumped planar waveguide lasers.

Beach RJ, Mitchell SC, Meissner HE, Meissner OR, Krupke WF, McMahon JM, Bennett WJ, Shepherd DP.

Opt Lett. 2001 Jun 15;26(12):881-3.

PMID:
18040479
31.

Longitudinally diode-pumped Nd:YAG double-clad planar waveguide laser.

Mackenzie JI, Li C, Shepherd DP, Meissner HE, Mitchell SC.

Opt Lett. 2001 May 15;26(10):698-700.

PMID:
18040424
32.

Continuous-wave broadband emitter based on a transition-metal-ion-doped waveguide.

Pollnau M, Salathé RP, Bhutta T, Shepherd DP, Eason RW.

Opt Lett. 2001 Mar 1;26(5):283-5.

PMID:
18040302
33.

End-pumped, passively Q-switched Yb:YAG double-clad waveguide laser.

Mackenzie JI, Shepherd DP.

Opt Lett. 2002 Dec 15;27(24):2161-3.

PMID:
18033469
34.

Extended operation of synchronously pumped optical parametric oscillators to longer idler wavelengths.

Watson MA, O'Connor MV, Lloyd PS, Shepherd DP, Hanna DC, Gawith CB, Ming L, Smith PG, Balachninaite O.

Opt Lett. 2002 Dec 2;27(23):2106-8.

PMID:
18033456
35.

Compact diode-pumped passively Q-switched tunable Er-Yb double-clad fiber laser.

Laroche M, Chardon AM, Nilsson J, Shepherd DP, Clarkson WA, Girard S, Moncorgé R.

Opt Lett. 2002 Nov 15;27(22):1980-2.

PMID:
18033418
36.

Synchronously pumped optical parametric oscillator driven by a femtosecond mode-locked fiber laser.

O'Connor MV, Watson MA, Shepherd DP, Hanna DC, Price JH, Malinowski A, Nilsson J, Broderick NG, Richardson DJ, Lefort L.

Opt Lett. 2002 Jun 15;27(12):1052-4.

PMID:
18026362
37.

Room-temperature continuous-wave operation of Ti:sapphire buried channel-waveguide lasers fabricated via proton implantation.

Grivas C, Shepherd DP, Eason RW, Laversenne L, Moretti P, Borca CN, Pollnau M.

Opt Lett. 2006 Dec 1;31(23):3450-2.

PMID:
17099746
38.

Intra-cavity side-pumped Ho:YAG laser.

So S, Mackenzie JI, Shepherd DP, Clarkson WA, Betterton JG, Gorton EK, Terry JA.

Opt Express. 2006 Oct 30;14(22):10481-7.

PMID:
19529448
39.

Single-mode direct-ultraviolet-written channel waveguide laser in neodymium-doped silica on silicon.

Guilhot DA, Emmerson GD, Gawith CB, Watts SP, Shepherd DP, Williams RB, Smith PG.

Opt Lett. 2004 May 1;29(9):947-9.

PMID:
15143636
40.

Synchronously pumped CdSe optical parametric oscillator in the 9-10 microm region.

Watson MA, O'Connor MV, Shepherd DP, Hanna DC.

Opt Lett. 2003 Oct 15;28(20):1957-9.

PMID:
14587788
41.

Linkage analysis of systemic lupus erythematosus induced in diabetes-prone nonobese diabetic mice by Mycobacterium bovis.

Jordan MA, Silveira PA, Shepherd DP, Chu C, Kinder SJ, Chen J, Palmisano LJ, Poulton LD, Baxter AG.

J Immunol. 2000 Aug 1;165(3):1673-84.

43.

Performance of a low-loss pulsed-laser-deposited Nd:Gd(3) Ga(5)O(12) waveguide laser at 1.06 and 0.94 mum.

Bonner CL, Anderson AA, Eason RW, Shepherd DP, Gill DS, Grivas C, Vainos N.

Opt Lett. 1997 Jul 1;22(13):988-90.

PMID:
18185728
44.

Channel waveguide laser at 1 microm in Yb-indiffused LiNbO(3).

Jones JK, de Sandro JP, Hempstead M, Shepherd DP, Large AC, Tropper AC, Wilkinson JS.

Opt Lett. 1995 Jul 1;20(13):1477-9.

PMID:
19862054
45.

1.9-microm operation of a Tm:lead germanate glass waveguide laser.

Shepherd DP, Brinck DJ, Wang J, Tropper AC, Hanna DC, Kakarantzas G, Townsend PD.

Opt Lett. 1994 Jul 1;19(13):954-6.

PMID:
19844499
46.

Growth and low-threshold laser oscillation of an epitaxially grown Nd:YAG waveguide.

Chartier I, Ferrand B, Pelenc D, Field SJ, Hanna DC, Large AC, Shepherd DP, Tropper AC.

Opt Lett. 1992 Jun 1;17(11):810-2.

PMID:
19794639
47.

Ion-implanted Nd:GGG channel waveguide laser.

Field SJ, Hanna DC, Large AC, Shepherd DP, Tropper AC, Chandler PJ, Townsend PD, Zhang L.

Opt Lett. 1992 Jan 1;17(1):52-4.

PMID:
19784227
48.

Ion-implanted Nd:MgO:LiNbO(3) planar waveguide laser.

Field SJ, Hanna DC, Shepherd DP, Tropper AC, Chandler PJ, Townsend PD, Zhang L.

Opt Lett. 1991 Apr 1;16(7):481-3.

PMID:
19773973
49.

Dietary protection against ionizing radiation.

Shepherd DP, Brown SO, Krise GM, Crookshank HR.

Radiat Res. 1973 Nov;56(2):282-90. No abstract available.

PMID:
4749592

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