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Directly observed therapy and risk of unfavourable tuberculosis treatment outcomes among an international cohort of people living with HIV in low- and middle-income countries.

Pettit AC, Jenkins CA, Blevins Peratikos M, Yotebieng M, Diero L, Do CD, Ross J, Veloso VG, Hawerlander D, Marcy O, Shepherd BE, Fenner L, Sterling TR; International Epidemiology Databases to Evaluate AIDS (IeDEA) Consortium.

J Int AIDS Soc. 2019 Dec;22(12):e25423. doi: 10.1002/jia2.25423.


An empirical comparison of two novel transformation models.

Tian Y, Hothorn T, Li C, Harrell FE Jr, Shepherd BE.

Stat Med. 2019 Dec 6. doi: 10.1002/sim.8425. [Epub ahead of print]


Clinic-Level Factors Associated with Retention in Care among People Living with HIV in a Multi-Site United States Cohort, 2010-2016.

Oliver CD, Rebeiro PF, Shepherd BE, Keruly J, Mayer KH, Mathews WC, Turan B, Moore RD, Crane HM, Geng E, Napravnik S, Kitahata MM, Mugavero MJ, Pettit AC; Centers for AIDS Research Network of Integrated Clinical Systems.

Clin Infect Dis. 2019 Nov 23. pii: ciz1144. doi: 10.1093/cid/ciz1144. [Epub ahead of print]


Exogenous Ketone Salts Do Not Improve Cognitive Performance During a Dual-Stress Challenge.

Waldman HS, Shepherd BD, Egan B, McAllister MJ.

Int J Sport Nutr Exerc Metab. 2019 Nov 21:1-8. doi: 10.1123/ijsnem.2019-0122. [Epub ahead of print]


Bilateral acute lower limb ischemia secondary to complete embolization of cardiac myxoma.

Ho KKF, Barsoum R, Shepherd B, McGahan T.

J Vasc Surg. 2019 Nov 7. pii: S0741-5214(19)32341-9. doi: 10.1016/j.jvs.2019.08.264. [Epub ahead of print]


Development of a Genomic Resource and Identification of Nucleotide Diversity of Yellow Perch by RAD Sequencing.

Guo L, Yao H, Shepherd B, Sepulveda-Villet OJ, Zhang DC, Wang HP.

Front Genet. 2019 Oct 14;10:992. doi: 10.3389/fgene.2019.00992. eCollection 2019. No abstract available.


The Population Impact of Late Presentation with Advanced HIV Disease and Delayed Antiretroviral Therapy in Adults Receiving HIV Care in Latin America.

Belaunzarán-Zamudio PF, Caro-Vega YN, Shepherd BE, Rebeiro PF, Crabtree-Ramírez BE, Cortes CP, Grinsztejn B, Gotuzzo E, Mejia F, Padgett D, Pape JW, Rouzier V, Veloso V, Cardoso SW, McGowan CC, Sierra-Madero JG.

Am J Epidemiol. 2019 Oct 29. pii: kwz252. doi: 10.1093/aje/kwz252. [Epub ahead of print]


Testicular tumour, could it be benign? A clinical conundrum.

Wood D, Chua D, Shepherd B, Desai D.

Urol Case Rep. 2019 Aug 1;27:100981. doi: 10.1016/j.eucr.2019.100981. eCollection 2019 Nov.


Increased Mortality after Tuberculosis Treatment Completion in Persons with HIV in Latin America.

Koenig SP, Kim A, Shepherd BE, Cesar C, Veloso V, Cortes CP, Padgett D, Crabtree-Ramírez B, Gotuzzo E, McGowan CC, Sterling TR, Pape JW; Caribbean, Central and South America Network for HIV Epidemiology (CCASAnet).

Clin Infect Dis. 2019 Oct 20. pii: ciz1032. doi: 10.1093/cid/ciz1032. [Epub ahead of print]


Predicting the long-term impact of voluntary medical male circumcision on HIV incidence among men who have sex with men in Beijing, China.

Zhang C, Webb GF, Lou J, Shepherd BE, Qian HZ, Liu Y, Vermund SH.

AIDS Care. 2019 Oct 16:1-11. doi: 10.1080/09540121.2019.1679704. [Epub ahead of print]


Effects of Carbohydrate Mouth Rinsing on Upper Body Resistance Exercise Performance.

Krings BM, Shepherd BD, Waldman HS, McAllister MJ, Smith JW.

Int J Sport Nutr Exerc Metab. 2019 Sep 27:1-6. doi: 10.1123/ijsnem.2019-0073. [Epub ahead of print]


Mediastinal Pancreatic Pseudocyst: A Rare Cause of New Onset Dysphagia.

Panchal R, Carter KT, Shepherd B, de Delva P, Koller F, Copeland H.

Am Surg. 2019 Aug 1;85(8):e400-e402. No abstract available.


CD4/CD8 Ratio and CD4 Nadir Predict Mortality Following Noncommunicable Disease Diagnosis in Adults Living with HIV.

Castilho JL, Turner M, Shepherd BE, Koethe JR, Furukawa SS, Bofill CE, Raffanti S, Sterling TR.

AIDS Res Hum Retroviruses. 2019 Oct;35(10):960-967. doi: 10.1089/AID.2019.0064. Epub 2019 Sep 17.


Liopropomaincandescens sp. nov. (Epinephelidae, Liopropominae), a new species of basslet from mesophotic coral ecosystems of Pohnpei, Micronesia.

Pinheiro HT, Shepherd B, Greene BD, Rocha LA.

Zookeys. 2019 Jul 11;863:97-106. doi: 10.3897/zookeys.863.33778. eCollection 2019.


Cirrhilabruswakanda, a new species of fairy wrasse from mesophotic ecosystems of Zanzibar, Tanzania, Africa (Teleostei, Labridae).

Tea YK, Pinheiro HT, Shepherd B, Rocha LA.

Zookeys. 2019 Jul 11;863:85-96. doi: 10.3897/zookeys.863.35580. eCollection 2019.


Trends and Disparities in Mortality and Progression to AIDS in the Highly Active Antiretroviral Therapy Era: Tennessee, 1996-2016.

Rebeiro PF, Pettit AC, Sizemore L, Mathieson SA, Wester C, Kipp A, Shepherd BE, Sterling TR.

Am J Public Health. 2019 Sep;109(9):1266-1272. doi: 10.2105/AJPH.2019.305180. Epub 2019 Jul 18.


Giant Epithelial Splenic Cyst: An Unusual Cause of Abdominal Pain in a Healthy Adolescent Male.

Hardin S, Carter KT, Oberoi JK, Brister K, Shaw T, Shepherd B, Batson SD.

Am Surg. 2019 Jun 1;85(6):e306-e308. No abstract available.


Optimal management of HIV- positive adults at risk for kidney disease in Nigeria (Renal Risk Reduction "R3" Trial): protocol and study design.

Aliyu MH, Wudil UJ, Ingles DJ, Shepherd BE, Gong W, Musa BM, Muhammad H, Sani MU, Abdu A, Nalado AM, Atanda A, Ahonkhai AA, Ikizler TA, Winkler CA, Kopp JB, Kimmel PL, Wester CW.

Trials. 2019 Jun 10;20(1):341. doi: 10.1186/s13063-019-3436-y.


Three new species of Chromis (Teleostei, Pomacentridae) from mesophotic coral ecosystems of the Philippines.

Gabriela Arango B, T Pinheiro H, Rocha C, D Greene B, L Pyle R, M Copus J, Shepherd B, A Rocha L.

Zookeys. 2019 Apr 4;835:1-15. doi: 10.3897/zookeys.835.27528. eCollection 2019.


Plectranthiasahiahiata, a new species of perchlet from a mesophotic ecosystem at Rapa Nui (Easter Island) (Teleostei, Serranidae, Anthiadinae).

Shepherd B, Phelps T, Pinheiro HT, Pérez-Matus A, Rocha LA.

Zookeys. 2018 May 31;762:105-116. doi: 10.3897/zookeys.762.24618. eCollection 2018.


HIV-related tuberculosis: mortality risk in persons without vs. with culture-confirmed disease.

Crabtree-Ramírez B, Jenkins C, Jayathilake K, Carriquiry G, Veloso V, Padgett D, Gotuzzo E, Cortes C, Mejia F, McGowan CC, Duda S, Shepherd BE, Sterling TR.

Int J Tuberc Lung Dis. 2019 Mar 1;23(3):306-314. doi: 10.5588/ijtld.18.0111.


Self-reported Cannabis Use and Changes in Body Mass Index, CD4 T-Cell Counts, and HIV-1 RNA Suppression in Treated Persons with HIV.

Lee JT, Saag LA, Kipp AM, Logan J, Shepherd BE, Koethe JR, Turner M, Bebawy S, Sterling TR, Hulgan T.

AIDS Behav. 2019 Feb 18. doi: 10.1007/s10461-019-02430-x. [Epub ahead of print]


Impact of Fat Grip Attachments on Muscular Strength and Neuromuscular Activation During Resistance Exercise.

Krings BM, Shepherd BD, Swain JC, Turner AJ, Chander H, Waldman HS, McAllister MJ, Knight AC, Smith JW.

J Strength Cond Res. 2019 Jan 23. doi: 10.1519/JSC.0000000000002954. [Epub ahead of print]


Tumoral melanosis associated with combined BRAF/MEK inhibition (dabrafenib/trametinib) in metastatic melanoma.

Laino A, Shepherd B, Atkinson V, Fu H, Soyer HP, Schaider H.

JAAD Case Rep. 2018 Oct 10;4(9):921-923. doi: 10.1016/j.jdcr.2018.06.024. eCollection 2018 Oct. No abstract available.


Treatment of drug-susceptible tuberculosis among people living with human immunodeficiency virus infection: an update.

Pettit AC, Shepherd BE, Sterling TR.

Curr Opin HIV AIDS. 2018 Nov;13(6):469-477. doi: 10.1097/COH.0000000000000506. Review.


Dose Optimization of H56:IC31 Vaccine for Tuberculosis-Endemic Populations. A Double-Blind, Placebo-controlled, Dose-Selection Trial.

Suliman S, Luabeya AKK, Geldenhuys H, Tameris M, Hoff ST, Shi Z, Tait D, Kromann I, Ruhwald M, Rutkowski KT, Shepherd B, Hokey D, Ginsberg AM, Hanekom WA, Andersen P, Scriba TJ, Hatherill M; H56-035 Trial Group.

Am J Respir Crit Care Med. 2019 Jan 15;199(2):220-231. doi: 10.1164/rccm.201802-0366OC.


Early Retention in Care Neither Mediates Nor Modifies the Effect of Sex and Sexual Mode of HIV Acquisition on HIV Survival in the Americas.

Coelho L, Rebeiro PF, Castilho JL, Caro-Vega Y, Mejia FA, Cesar C, Cortes CP, Padgett D, McGowan CC, Veloso VG, Sterling TR, Grinsztejn B, Shepherd BE, Luz PM.

AIDS Patient Care STDS. 2018 Aug;32(8):306-313. doi: 10.1089/apc.2018.0028. Erratum in: AIDS Patient Care STDS. 2018 Sep 1;32(9):379.


Mesophotic coral ecosystems are threatened and ecologically distinct from shallow water reefs.

Rocha LA, Pinheiro HT, Shepherd B, Papastamatiou YP, Luiz OJ, Pyle RL, Bongaerts P.

Science. 2018 Jul 20;361(6399):281-284. doi: 10.1126/science.aaq1614.


Older age at first tuberculosis diagnosis is associated with tuberculosis recurrence in HIV-negative persons.

van der Heijden YF, Karim F, Chinappa T, Mufamadi G, Zako L, Shepherd BE, Maruri F, Moosa MS, Sterling TR, Pym AS.

Int J Tuberc Lung Dis. 2018 Aug 1;22(8):871-877. doi: 10.5588/ijtld.17.0766.


"Enhanced Recovery" Protocol Compliance Influences Length of Stay: Resolving Barriers to Implementation.

Zoog E, Simon R, Stanley JD, Moore R, Lorenzo-Rivero S, Shepherd B, Gao C, Nelson E.

Am Surg. 2018 Jun 1;84(6):801-807.


Ghrelin stimulates growth hormone release from the pituitary via hypothalamic growth hormone-releasing hormone neurons in the cichlid, Oreochromis niloticus.

Ogawa S, Liu X, Shepherd BS, Parhar IS.

Cell Tissue Res. 2018 Nov;374(2):349-365. doi: 10.1007/s00441-018-2870-6. Epub 2018 Jun 23.


Partners-based HIV treatment for seroconcordant couples attending antenatal and postnatal care in rural Mozambique: A cluster randomized trial protocol.

Audet CM, Graves E, Barreto E, De Schacht C, Gong W, Shepherd BE, Aboobacar A, Gonzalez-Calvo L, Alvim MF, Aliyu MH, Kipp AM, Jordan H, Amico KR, Diemer M, Ciaranello A, Dugdale C, Vermund SH, Van Rompaey S.

Contemp Clin Trials. 2018 Aug;71:63-69. doi: 10.1016/j.cct.2018.05.020. Epub 2018 Jun 5.


Multi-Donor Longitudinal Antibody Repertoire Sequencing Reveals the Existence of Public Antibody Clonotypes in HIV-1 Infection.

Setliff I, McDonnell WJ, Raju N, Bombardi RG, Murji AA, Scheepers C, Ziki R, Mynhardt C, Shepherd BE, Mamchak AA, Garrett N, Karim SA, Mallal SA, Crowe JE Jr, Morris L, Georgiev IS.

Cell Host Microbe. 2018 Jun 13;23(6):845-854.e6. doi: 10.1016/j.chom.2018.05.001. Epub 2018 May 31.


Trends in proportion of older HIV-infected people in care in Latin America and the Caribbean: a growing challenge.

Caro-Vega Y, Belaunzarán-Zamudio PF, Crabtree-Ramírez B, Shepherd BE, Mejia F, Giganti MJ, Patterson P, Grinsztejn B, Wolff M, Pape JW, Padgett D, Castilho JL, McGowan C, Sierra-Madero JG.

Epidemiol Infect. 2018 Jul;146(10):1308-1311. doi: 10.1017/S0950268818001346. Epub 2018 May 30.


Brief Report: Circulating Markers of Immunologic Activity Reflect Adiposity in Persons With HIV on Antiretroviral Therapy.

Koethe JR, Jenkins CA, Furch BD, Lake JE, Barnett L, Hager CC, Smith R, Hulgan T, Shepherd BE, Kalams SA.

J Acquir Immune Defic Syndr. 2018 Sep 1;79(1):135-140. doi: 10.1097/QAI.0000000000001768.


Survival after cancer diagnosis in a cohort of HIV-positive individuals in Latin America.

Fink VI, Jenkins CA, Castilho JL, Person AK, Shepherd BE, Grinsztejn B, Netto J, Crabtree-Ramirez B, Cortés CP, Padgett D, Jayathilake K, McGowan C, Cahn P; CCASAnet.

Infect Agent Cancer. 2018 May 8;13:16. doi: 10.1186/s13027-018-0188-3. eCollection 2018.


Emotional demands and alcohol use in corrections: A moderated mediation model.

Shepherd BR, Fritz C, Hammer LB, Guros F, Meier D.

J Occup Health Psychol. 2019 Aug;24(4):438-449. doi: 10.1037/ocp0000114. Epub 2018 May 14.


Lower Concentrations of Circulating Medium and Long-Chain Acylcarnitines Characterize Insulin Resistance in Persons with HIV.

Bailin SS, Jenkins CA, Petucci C, Culver JA, Shepherd BE, Fessel JP, Hulgan T, Koethe JR.

AIDS Res Hum Retroviruses. 2018 Jun;34(6):536-543. doi: 10.1089/AID.2017.0314. Epub 2018 May 2.


Virologic failure and mortality in older ART initiators in a multisite Latin American and Caribbean Cohort.

Carriquiry G, Giganti MJ, Castilho JL, Jayathilake K, Cahn P, Grinsztejn B, Cortes C, Pape JW, Padgett D, Sierra-Madero J, McGowan CC, Shepherd BE, Gotuzzo E.

J Int AIDS Soc. 2018 Mar;21(3):e25088. doi: 10.1002/jia2.25088.


Is substance use associated with HIV cascade outcomes in Latin America?

De Boni RB, Peratikos MB, Shepherd BE, Grinsztejn B, Cortés C, Padgett D, Gotuzzo E, Belaunzarán-Zamudio PF, Rebeiro PF, Duda SN, McGowan CC; for CCASAnet.

PLoS One. 2018 Mar 15;13(3):e0194228. doi: 10.1371/journal.pone.0194228. eCollection 2018.


Durability of Efavirenz Compared With Boosted Protease Inhibitor-Based Regimens in Antiretroviral-Naïve Patients in the Caribbean and Central and South America.

Caro-Vega Y, Belaunzarán-Zamudio PF, Crabtree-Ramírez BE, Shepherd BE, Grinsztejn B, Wolff M, Pape JW, Padgett D, Gotuzzo E, McGowan CC, Sierra-Madero JG.

Open Forum Infect Dis. 2018 Mar 2;5(3):ofy004. doi: 10.1093/ofid/ofy004. eCollection 2018 Mar.


Peer counselling versus standard-of-care on reducing high-risk behaviours among newly diagnosed HIV-positive men who have sex with men in Beijing, China: a randomized intervention study.

Liu Y, Vermund SH, Ruan Y, Liu H, Rivet Amico K, Simoni JM, Shepherd BE, Shao Y, Qian HZ.

J Int AIDS Soc. 2018 Feb;21(2). doi: 10.1002/jia2.25079.


The role of human outdoor recreation in shaping patterns of grizzly bear-black bear co-occurrence.

Ladle A, Steenweg R, Shepherd B, Boyce MS.

PLoS One. 2018 Feb 1;13(2):e0191730. doi: 10.1371/journal.pone.0191730. eCollection 2018.


Increased non-AIDS mortality among persons with AIDS-defining events after antiretroviral therapy initiation.

Pettit AC, Giganti MJ, Ingle SM, May MT, Shepherd BE, Gill MJ, Fätkenheuer G, Abgrall S, Saag MS, Del Amo J, Justice AC, Miro JM, Cavasinni M, Dabis F, Monforte AD, Reiss P, Guest J, Moore D, Shepherd L, Obel N, Crane HM, Smith C, Teira R, Zangerle R, Sterne JA, Sterling TR; Antiretroviral Therapy Cohort Collaboration (ART-CC) investigators.

J Int AIDS Soc. 2018 Jan;21(1). doi: 10.1002/jia2.25031.


Effects of cortisol and lipopolysaccharide on expression of select growth-, stress- and immune-related genes in rainbow trout liver.

Shepherd BS, Spear AR, Philip AM, Leaman DW, Stepien CA, Sepulveda-Villet OJ, Palmquist DE, Vijayan MM.

Fish Shellfish Immunol. 2018 Mar;74:410-418. doi: 10.1016/j.fsi.2018.01.003. Epub 2018 Jan 8.


Female reproductive impacts of dietary methylmercury in yellow perch (Perca flavescens) and zebrafish (Danio rerio).

DeBofsky AR, Klingler RH, Mora-Zamorano FX, Walz M, Shepherd B, Larson JK, Anderson D 3rd, Yang L, Goetz F, Basu N, Head J, Tonellato P, Armstrong BM, Murphy C, Carvan MJ 3rd.

Chemosphere. 2018 Mar;195:301-311. doi: 10.1016/j.chemosphere.2017.12.029. Epub 2017 Dec 6.


Effects of carbohydrate and branched-chain amino acid beverage ingestion during acute upper body resistance exercise on performance and postexercise hormone response.

Smith JW, Krings BM, Shepherd BD, Waldman HS, Basham SA, McAllister MJ.

Appl Physiol Nutr Metab. 2018 May;43(5):504-509. doi: 10.1139/apnm-2017-0563. Epub 2017 Dec 15.


The impact of a community-led program promoting weight loss and healthy living in Aboriginal communities: the New South Wales Knockout Health Challenge.

Passmore E, Shepherd B, Milat A, Maher L, Hennessey K, Havrlant R, Maxwell M, Hodge W, Christian F, Richards J, Mitchell J.

BMC Public Health. 2017 Dec 13;17(1):951. doi: 10.1186/s12889-017-4955-7.


Considerations for analysis of time-to-event outcomes measured with error: Bias and correction with SIMEX.

Oh EJ, Shepherd BE, Lumley T, Shaw PA.

Stat Med. 2018 Apr 15;37(8):1276-1289. doi: 10.1002/sim.7554. Epub 2017 Nov 29.


Covariate-adjusted Spearman's rank correlation with probability-scale residuals.

Liu Q, Li C, Wanga V, Shepherd BE.

Biometrics. 2018 Jun;74(2):595-605. doi: 10.1111/biom.12812. Epub 2017 Nov 13.

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