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Soil Nutrients Drive Function and Composition of phoC-Harboring Bacterial Community in Acidic Soils of Southern China.

Zheng MM, Wang C, Li WX, Song WF, Shen RF.

Front Microbiol. 2019 Nov 20;10:2654. doi: 10.3389/fmicb.2019.02654. eCollection 2019.


Targeting specificity of APOBEC-based cytosine base editor in human iPSCs determined by whole genome sequencing.

McGrath E, Shin H, Zhang L, Phue JN, Wu WW, Shen RF, Jang YY, Revollo J, Ye Z.

Nat Commun. 2019 Nov 25;10(1):5353. doi: 10.1038/s41467-019-13342-8.


Ammonium Alleviates Manganese Toxicity and Accumulation in Rice by Down-Regulating the Transporter Gene OsNramp5 Through Rhizosphere Acidification.

Hu AY, Zheng MM, Sun LM, Zhao XQ, Shen RF.

Front Plant Sci. 2019 Oct 3;10:1194. doi: 10.3389/fpls.2019.01194. eCollection 2019.


T cell-derived soluble glycoprotein GPIbα mediates PGE2 production in human monocytes activated with the vaccine adjuvant MDP.

Liu F, Endo Y, Romantseva T, Wu WW, Akue A, Shen RF, Golding H, Zaitseva M.

Sci Signal. 2019 Oct 8;12(602). pii: eaat6023. doi: 10.1126/scisignal.aat6023.


Novel reference genes in colorectal cancer identify a distinct subset of high stage tumors and their associated histologically normal colonic tissues.

Xu L, Luo H, Wang R, Wu WW, Phue JN, Shen RF, Juhl H, Wu L, Alterovitz WL, Simonyan V, Pelosof L, Rosenberg AS.

BMC Med Genet. 2019 Aug 13;20(1):138. doi: 10.1186/s12881-019-0867-y.


The neuraminidase of A(H3N2) influenza viruses circulating since 2016 is antigenically distinct from the A/Hong Kong/4801/2014 vaccine strain.

Wan H, Gao J, Yang H, Yang S, Harvey R, Chen YQ, Zheng NY, Chang J, Carney PJ, Li X, Plant E, Jiang L, Couzens L, Wang C, Strohmeier S, Wu WW, Shen RF, Krammer F, Cipollo JF, Wilson PC, Stevens J, Wan XF, Eichelberger MC, Ye Z.

Nat Microbiol. 2019 Dec;4(12):2216-2225. doi: 10.1038/s41564-019-0522-6. Epub 2019 Aug 12.


Bacillus pumilus increases boron uptake and inhibits rapeseed growth under boron supply irrespective of phosphorus fertilization.

Masood S, Zhao XQ, Shen RF.

AoB Plants. 2019 Jun 26;11(4):plz036. doi: 10.1093/aobpla/plz036. eCollection 2019 Aug.


Carbon Dioxide Improves Phosphorus Nutrition by Facilitating the Remobilization of Phosphorus From the Shoot Cell Wall in Rice (Oryza sativa).

Zhu XF, Zhang XL, Dong XY, Shen RF.

Front Plant Sci. 2019 May 22;10:665. doi: 10.3389/fpls.2019.00665. eCollection 2019.


Ammonium regulates Fe deficiency responses by enhancing nitric oxide signaling in Arabidopsis thaliana.

Zhu XF, Dong XY, Wu Q, Shen RF.

Planta. 2019 Oct;250(4):1089-1102. doi: 10.1007/s00425-019-03202-6. Epub 2019 Jun 5.


Effects of cadmium exposure on expression of glutathione synthetase system genes in Acidithiobacillus ferrooxidans.

Zheng C, Zhang L, Chen M, Zhao XQ, Duan Y, Meng Y, Zhang X, Shen RF.

Extremophiles. 2018 Nov;22(6):895-902. doi: 10.1007/s00792-018-1046-3. Epub 2018 Aug 24.


Two Genes Encoding a Bacterial-Type ATP-Binding Cassette Transporter are Implicated in Aluminum Tolerance in Buckwheat.

Che J, Yamaji N, Yokosho K, Shen RF, Ma JF.

Plant Cell Physiol. 2018 Dec 1;59(12):2502-2511. doi: 10.1093/pcp/pcy171.


Trans-chalcone increases p53 activity via DNAJB1/HSP40 induction and CRM1 inhibition.

Silva G, Marins M, Chaichanasak N, Yoon Y, Fachin AL, Pinhanelli VC, Regasini LO, Dos Santos MB, Ayusso GM, Marques BC, Wu WW, Phue JN, Shen RF, Baek SJ.

PLoS One. 2018 Aug 17;13(8):e0202263. doi: 10.1371/journal.pone.0202263. eCollection 2018.


Aluminum-Nitrogen Interactions in the Soil-Plant System.

Zhao XQ, Shen RF.

Front Plant Sci. 2018 Jun 18;9:807. doi: 10.3389/fpls.2018.00807. eCollection 2018. Review.


Deciphering Protein O-Glycosylation: Solid-Phase Chemoenzymatic Cleavage and Enrichment.

Yang S, Onigman P, Wu WW, Sjogren J, Nyhlen H, Shen RF, Cipollo J.

Anal Chem. 2018 Jul 3;90(13):8261-8269. doi: 10.1021/acs.analchem.8b01834. Epub 2018 Jun 24.


Robust Sub-nanomolar Library Preparation for High Throughput Next Generation Sequencing.

Wu WW, Phue JN, Lee CT, Lin C, Xu L, Wang R, Zhang Y, Shen RF.

BMC Genomics. 2018 May 4;19(1):326. doi: 10.1186/s12864-018-4677-y.


Cryopreserved limbal lamellar keratoplasty for peripheral corneal and limbal reconstruction.

Xie HT, Li J, Liu Y, Jiang DL, Shen RF, Zhang MC.

Int J Ophthalmol. 2018 Apr 18;11(4):699-702. doi: 10.18240/ijo.2018.04.27. eCollection 2018.


Nitrate inhibits the remobilization of cell wall phosphorus under phosphorus-starvation conditions in rice (Oryza sativa).

Zhu CQ, Zhu XF, Wang C, Dong XY, Shen RF.

Planta. 2018 Jul;248(1):185-196. doi: 10.1007/s00425-018-2892-z. Epub 2018 Apr 16.


Identification of Sialic Acid Linkages on Intact Glycopeptides via Differential Chemical Modification Using IntactGIG-HILIC.

Yang S, Wu WW, Shen RF, Bern M, Cipollo J.

J Am Soc Mass Spectrom. 2018 Jun;29(6):1273-1283. doi: 10.1007/s13361-018-1931-0. Epub 2018 Apr 12.


Effective reduction of cadmium accumulation in rice grain by expressing OsHMA3 under the control of the OsHMA2 promoter.

Shao JF, Xia J, Yamaji N, Shen RF, Ma JF.

J Exp Bot. 2018 Apr 27;69(10):2743-2752. doi: 10.1093/jxb/ery107.


Preferential Distribution of Boron to Developing Tissues Is Mediated by the Intrinsic Protein OsNIP3.

Shao JF, Yamaji N, Liu XW, Yokosho K, Shen RF, Ma JF.

Plant Physiol. 2018 Feb;176(2):1739-1750. doi: 10.1104/pp.17.01641. Epub 2017 Dec 7.


Transcriptome analysis of human colorectal cancer biopsies reveals extensive expression correlations among genes related to cell proliferation, lipid metabolism, immune response and collagen catabolism.

Xu L, Wang R, Ziegelbauer J, Wu WW, Shen RF, Juhl H, Zhang Y, Pelosof L, Rosenberg AS.

Oncotarget. 2017 Aug 18;8(43):74703-74719. doi: 10.18632/oncotarget.20345. eCollection 2017 Sep 26.


3D brain Organoids derived from pluripotent stem cells: promising experimental models for brain development and neurodegenerative disorders.

Lee CT, Bendriem RM, Wu WW, Shen RF.

J Biomed Sci. 2017 Aug 20;24(1):59. doi: 10.1186/s12929-017-0362-8. Review.


Comparative pathogenomics of Clostridium tetani.

Cohen JE, Wang R, Shen RF, Wu WW, Keller JE.

PLoS One. 2017 Aug 11;12(8):e0182909. doi: 10.1371/journal.pone.0182909. eCollection 2017.


Elevated Carbon Dioxide Alleviates Aluminum Toxicity by Decreasing Cell Wall Hemicellulose in Rice (Oryza sativa).

Zhu XF, Zhao XS, Wang B, Wu Q, Shen RF.

Front Physiol. 2017 Jul 18;8:512. doi: 10.3389/fphys.2017.00512. eCollection 2017.


PARVUS affects aluminium sensitivity by modulating the structure of glucuronoxylan in Arabidopsis thaliana.

Zhu XF, Wan JX, Wu Q, Zhao XS, Zheng SJ, Shen RF.

Plant Cell Environ. 2017 Sep;40(9):1916-1925. doi: 10.1111/pce.12999. Epub 2017 Jul 21.


Hydroxy-Al and cell-surface negativity are responsible for the enhanced sensitivity of Rhodotorula taiwanensis to aluminum by increased medium pH.

Zhao XQ, Bao XM, Wang C, Xiao ZY, Hu ZM, Zheng CL, Shen RF.

Arch Microbiol. 2017 Oct;199(8):1185-1194. doi: 10.1007/s00203-017-1387-9. Epub 2017 May 24.


Boron Supply Enhances Aluminum Tolerance in Root Border Cells of Pea (Pisum sativum) by Interacting with Cell Wall Pectins.

Li XW, Liu JY, Fang J, Tao L, Shen RF, Li YL, Xiao HD, Feng YM, Wen HX, Guan JH, Wu LS, He YM, Goldbach HE, Yu M.

Front Plant Sci. 2017 May 8;8:742. doi: 10.3389/fpls.2017.00742. eCollection 2017.


Complex Nature of Protein Carbonylation Specificity After Metal-Catalyzed Oxidation.

Kryndushkin D, Wu WW, Venna R, Norcross MA, Shen RF, Rao VA.

Pharm Res. 2017 Apr;34(4):765-779. doi: 10.1007/s11095-017-2103-9. Epub 2017 Feb 1.


The Key to Mn Homeostasis in Plants: Regulation of Mn Transporters.

Shao JF, Yamaji N, Shen RF, Ma JF.

Trends Plant Sci. 2017 Mar;22(3):215-224. doi: 10.1016/j.tplants.2016.12.005. Epub 2017 Jan 10. Review.


Nitric oxide acts upstream of ethylene in cell wall phosphorus reutilization in phosphorus-deficient rice.

Zhu XF, Zhu CQ, Wang C, Dong XY, Shen RF.

J Exp Bot. 2017 Jan 1;68(3):753-760. doi: 10.1093/jxb/erw480.


An Al-inducible expansin gene, OsEXPA10 is involved in root cell elongation of rice.

Che J, Yamaji N, Shen RF, Ma JF.

Plant J. 2016 Oct;88(1):132-142. doi: 10.1111/tpj.13237. Epub 2016 Sep 22.


Alkali-Soluble Pectin Is the Primary Target of Aluminum Immobilization in Root Border Cells of Pea (Pisum sativum).

Yang J, Qu M, Fang J, Shen RF, Feng YM, Liu JY, Bian JF, Wu LS, He YM, Yu M.

Front Plant Sci. 2016 Sep 13;7:1297. doi: 10.3389/fpls.2016.01297. eCollection 2016.


A potential contribution of the less negatively charged cell wall to the high aluminum tolerance of Rhodotorula taiwanensis RS1.

Hu ZM, Zhao XQ, Bao XM, Wang C, Wang W, Zheng L, Lan P, Shen RF.

Yeast. 2016 Nov;33(11):575-586. doi: 10.1002/yea.3182. Epub 2016 Sep 8.


Differential Effects of Nitrogen Forms on Cell Wall Phosphorus Remobilization Are Mediated by Nitric Oxide, Pectin Content, and Phosphate Transporter Expression.

Zhu CQ, Zhu XF, Hu AY, Wang C, Wang B, Dong XY, Shen RF.

Plant Physiol. 2016 Jun;171(2):1407-17. doi: 10.1104/pp.16.00176. Epub 2016 Apr 15.


An Aluminum-Inducible IREG Gene is Required for Internal Detoxification of Aluminum in Buckwheat.

Yokosho K, Yamaji N, Mitani-Ueno N, Shen RF, Ma JF.

Plant Cell Physiol. 2016 Jun;57(6):1169-78. doi: 10.1093/pcp/pcw065. Epub 2016 Apr 5.


Integration of transcriptomic and proteomic analysis towards understanding the systems biology of root hairs.

Wang H, Lan P, Shen RF.

Proteomics. 2016 Mar;16(5):877-93. doi: 10.1002/pmic.201500265. Review.


Silicon decreases both uptake and root-to-shoot translocation of manganese in rice.

Che J, Yamaji N, Shao JF, Ma JF, Shen RF.

J Exp Bot. 2016 Mar;67(5):1535-44. doi: 10.1093/jxb/erv545. Epub 2016 Jan 4.


Putrescine Alleviates Iron Deficiency via NO-Dependent Reutilization of Root Cell-Wall Fe in Arabidopsis.

Zhu XF, Wang B, Song WF, Zheng SJ, Shen RF.

Plant Physiol. 2016 Jan;170(1):558-67. doi: 10.1104/pp.15.01617. Epub 2015 Nov 17.


Distinct Profiles for Mitochondrial t-RNAs and Small Nucleolar RNAs in Locally Invasive and Metastatic Colorectal Cancer.

Xu L, Ziegelbauer J, Wang R, Wu WW, Shen RF, Juhl H, Zhang Y, Rosenberg A.

Clin Cancer Res. 2016 Feb 1;22(3):773-84. doi: 10.1158/1078-0432.CCR-15-0737. Epub 2015 Sep 18.


Aluminium alleviates manganese toxicity to rice by decreasing root symplastic Mn uptake and reducing availability to shoots of Mn stored in roots.

Wang W, Zhao XQ, Hu ZM, Shao JF, Che J, Chen RF, Dong XY, Shen RF.

Ann Bot. 2015 Aug;116(2):237-46. doi: 10.1093/aob/mcv090. Epub 2015 Jun 22.


NAG-1/GDF15 accumulates in the nucleus and modulates transcriptional regulation of the Smad pathway.

Min KW, Liggett JL, Silva G, Wu WW, Wang R, Shen RF, Eling TE, Baek SJ.

Oncogene. 2016 Jan 21;35(3):377-88. doi: 10.1038/onc.2015.95. Epub 2015 Apr 20.


Catalpol: a potential therapeutic for neurodegenerative diseases.

Jiang B, Shen RF, Bi J, Tian XS, Hinchliffe T, Xia Y.

Curr Med Chem. 2015;22(10):1278-91. Review.


Pectin enhances rice (Oryza sativa) root phosphorus remobilization.

Zhu XF, Wang ZW, Wan JX, Sun Y, Wu YR, Li GX, Shen RF, Zheng SJ.

J Exp Bot. 2015 Feb;66(3):1017-24. doi: 10.1093/jxb/eru461. Epub 2014 Dec 20.


Altered cell wall properties are responsible for ammonium-reduced aluminium accumulation in rice roots.

Wang W, Zhao XQ, Chen RF, Dong XY, Lan P, Ma JF, Shen RF.

Plant Cell Environ. 2015 Jul;38(7):1382-90. doi: 10.1111/pce.12490. Epub 2015 Jan 23.


Physiological characterization of aluminum tolerance and accumulation in tartary and wild buckwheat.

Wang H, Chen RF, Iwashita T, Shen RF, Ma JF.

New Phytol. 2015 Jan;205(1):273-9. doi: 10.1111/nph.13011. Epub 2014 Sep 7.


GEF-H1 controls focal adhesion signaling that regulates mesenchymal stem cell lineage commitment.

Huang IH, Hsiao CT, Wu JC, Shen RF, Liu CY, Wang YK, Chen YC, Huang CM, del Álamo JC, Chang ZF, Tang MJ, Khoo KH, Kuo JC.

J Cell Sci. 2014 Oct 1;127(Pt 19):4186-200. doi: 10.1242/jcs.150227. Epub 2014 Aug 8.


Differential expression of Nrat1 is responsible for Al-tolerance QTL on chromosome 2 in rice.

Xia J, Yamaji N, Che J, Shen RF, Ma JF.

J Exp Bot. 2014 Aug;65(15):4297-304. doi: 10.1093/jxb/eru201. Epub 2014 May 12.


Normal root elongation requires arginine produced by argininosuccinate lyase in rice.

Xia J, Yamaji N, Che J, Shen RF, Ma JF.

Plant J. 2014 Apr;78(2):215-26. doi: 10.1111/tpj.12476. Epub 2014 Mar 26.


Proteomics of aluminum tolerance in plants.

Zheng L, Lan P, Shen RF, Li WF.

Proteomics. 2014 Mar;14(4-5):566-78. doi: 10.1002/pmic.201300252. Review.


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