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Items: 1 to 50 of 103


Large-scale patterns of soil antibiotic resistome in Chinese croplands.

Du S, Shen JP, Hu HW, Wang JT, Han LL, Sheng R, Wei WX, Fang YT, Zhu YG, Zhang LM, He JZ.

Sci Total Environ. 2020 Apr 10;712:136418. doi: 10.1016/j.scitotenv.2019.136418. Epub 2020 Jan 2.


Arsenic and cadmium as predominant factors shaping the distribution patterns of antibiotic resistance genes in polluted paddy soils.

Zhao X, Shen JP, Zhang LM, Du S, Hu HW, He JZ.

J Hazard Mater. 2019 Dec 6:121838. doi: 10.1016/j.jhazmat.2019.121838. [Epub ahead of print]


[Effects of VEGF-Notch Signaling Pathway on Proliferation and Apoptosis of Bone Marrow MSC in Patients with Aplastic Anemia].

Deng S, Xiang JJ, Shen YY, Lin SY, Zeng YQ, Shen JP.

Zhongguo Shi Yan Xue Ye Xue Za Zhi. 2019 Dec;27(6):1925-1932. doi: 10.7534/j.issn.1009-2137.2019.06.035. Chinese.


Lamotrigine-induced hemophagocytic lymphohistiocytosis with Takotsubo cardiomyopathy: a case report.

Zhou JY, Martinez JA, Shen JP.

J Med Case Rep. 2019 Nov 26;13(1):345. doi: 10.1186/s13256-019-2295-1.


Ultrahigh-Density Screens for Genome-Wide Yeast EMAPs in a Single Plate.

Licon K, Shen JP, Munson BP, Michaca M, Fassino C, Fassino L, Kreisberg JF, Ideker T.

Methods Mol Biol. 2019;2049:73-85. doi: 10.1007/978-1-4939-9736-7_4.


Distribution and Succession Feature of Antibiotic Resistance Genes Along a Soil Development Chronosequence in Urumqi No.1 Glacier of China.

Shen JP, Li ZM, Hu HW, Zeng J, Zhang LM, Du S, He JZ.

Front Microbiol. 2019 Jul 9;10:1569. doi: 10.3389/fmicb.2019.01569. eCollection 2019.


Multiple factors drive the abundance and diversity of the diazotrophic community in typical farmland soils of China.

Han LL, Wang Q, Shen JP, Di HJ, Wang JT, Wei WX, Fang YT, Zhang LM, He JZ.

FEMS Microbiol Ecol. 2019 Aug 1;95(8). pii: fiz113. doi: 10.1093/femsec/fiz113.


The role of MIR-186 and ZNF545 in inhibiting the proliferation of multiple myeloma cells.

Deng S, Xiang JJ, Ge HP, Hu ZP, Shen JP, Lin SY, Zeng YQ.

J Biol Regul Homeost Agents. 2019 May-Jun,;33(3):721-729.


Protist communities are more sensitive to nitrogen fertilization than other microorganisms in diverse agricultural soils.

Zhao ZB, He JZ, Geisen S, Han LL, Wang JT, Shen JP, Wei WX, Fang YT, Li PP, Zhang LM.

Microbiome. 2019 Feb 27;7(1):33. doi: 10.1186/s40168-019-0647-0.


Multiple risks analysis for aplastic anemia in Zhejiang, China: A case-control study.

Wu LQ, Shen YY, Zhang Y, Kuang YM, Fang BM, Wang ZZ, Fu LJ, Shao KD, Shen JP, Zhou YH, Shen YP, Ye BD, Zheng ZY, Chen JF, Lin SY.

Medicine (Baltimore). 2019 Feb;98(8):e14519. doi: 10.1097/MD.0000000000014519.


Novel Third-Generation EGFR Tyrosine Kinase Inhibitors and Strategies to Overcome Therapeutic Resistance in Lung Cancer.

Murtuza A, Bulbul A, Shen JP, Keshavarzian P, Woodward BD, Lopez-Diaz FJ, Lippman SM, Husain H.

Cancer Res. 2019 Feb 15;79(4):689-698. doi: 10.1158/0008-5472.CAN-18-1281. Epub 2019 Feb 4. Review.


Contralateral pneumothorax in the subacute phase after pacemaker implantation: lead retention and follow-up.

Chen XD, Xu X, Ji JW, Liu HL, Shen JP.

J Geriatr Cardiol. 2018 Dec;15(12):744-746. doi: 10.11909/j.issn.1671-5411.2018.12.007. No abstract available.


[Effects of Stimulated Nitrogen Deposition on the Bacterial Community Structure of Semiarid Temperate Grassland].

Li ZM, Shen JP, Zhang LM, Liu GP, Bai WM, He JZ.

Huan Jing Ke Xue. 2018 Dec 8;39(12):5665-5671. doi: 10.13227/j.hjkx.201805043. Chinese.


Typing tumors using pathways selected by somatic evolution.

Wang S, Ma J, Zhang W, Shen JP, Huang J, Peng J, Ideker T.

Nat Commun. 2018 Oct 8;9(1):4159. doi: 10.1038/s41467-018-06464-y.


[Responses of Soil Ammonia Oxidizers to Simulated Warming and Increased Precipitation in a Temperate Steppe of Inner Mongolia].

Zhang CJ, Shen JP, Sun YF, Wang JT, Yang ZL, Han HY, Zhang LM, Wan SQ, He JZ.

Huan Jing Ke Xue. 2017 Aug 8;38(8):3463-3472. doi: 10.13227/j.hjkx.201702178. Chinese.


Synthetic Lethal Networks for Precision Oncology: Promises and Pitfalls.

Shen JP, Ideker T.

J Mol Biol. 2018 Sep 14;430(18 Pt A):2900-2912. doi: 10.1016/j.jmb.2018.06.026. Epub 2018 Jun 20. Review.


Disruption of NSD1 in Head and Neck Cancer Promotes Favorable Chemotherapeutic Responses Linked to Hypomethylation.

Bui N, Huang JK, Bojorquez-Gomez A, Licon K, Sanchez KS, Tang SN, Beckett AN, Wang T, Zhang W, Shen JP, Kreisberg JF, Ideker T.

Mol Cancer Ther. 2018 Jul;17(7):1585-1594. doi: 10.1158/1535-7163.MCT-17-0937. Epub 2018 Apr 10.


A global transcriptional network connecting noncoding mutations to changes in tumor gene expression.

Zhang W, Bojorquez-Gomez A, Velez DO, Xu G, Sanchez KS, Shen JP, Chen K, Licon K, Melton C, Olson KM, Yu MK, Huang JK, Carter H, Farley EK, Snyder M, Fraley SI, Kreisberg JF, Ideker T.

Nat Genet. 2018 Apr;50(4):613-620. doi: 10.1038/s41588-018-0091-2. Epub 2018 Apr 2.


Salvage tigecycline in high risk febrile neutropenic patients with hematological malignancies: a prospective multicenter study.

Zhou XP, Ye XJ, Shen JP, Lan JP, Jiang HF, Zhang J, Zhang XJ, Li L, Qian SX, Tong HY.

Leuk Lymphoma. 2018 Nov;59(11):2679-2685. doi: 10.1080/10428194.2018.1436173. Epub 2018 Feb 16.


Correcting CRISPR for copy number.

Shen JP, Ideker T.

Nat Genet. 2017 Nov 29;49(12):1674-1675. doi: 10.1038/ng.3994.


Impacts of Projected Climate Warming and Wetting on Soil Microbial Communities in Alpine Grassland Ecosystems of the Tibetan Plateau.

Zeng J, Shen JP, Wang JT, Hu HW, Zhang CJ, Bai R, Zhang LM, He JZ.

Microb Ecol. 2018 May;75(4):1009-1023. doi: 10.1007/s00248-017-1098-4. Epub 2017 Nov 9.


Genetic interaction mapping in mammalian cells using CRISPR interference.

Du D, Roguev A, Gordon DE, Chen M, Chen SH, Shales M, Shen JP, Ideker T, Mali P, Qi LS, Krogan NJ.

Nat Methods. 2017 Jun;14(6):577-580. doi: 10.1038/nmeth.4286. Epub 2017 May 8.


Interactive effects of multiple climate change factors on ammonia oxidizers and denitrifiers in a temperate steppe.

Zhang CJ, Shen JP, Sun YF, Wang JT, Zhang LM, Yang ZL, Han HY, Wan SQ, He JZ.

FEMS Microbiol Ecol. 2017 Apr 1;93(4). doi: 10.1093/femsec/fix037.


Genetic and functional diversity of ubiquitous DNA viruses in selected Chinese agricultural soils.

Han LL, Yu DT, Zhang LM, Shen JP, He JZ.

Sci Rep. 2017 Mar 22;7:45142. doi: 10.1038/srep45142.


Combinatorial CRISPR-Cas9 screens for de novo mapping of genetic interactions.

Shen JP, Zhao D, Sasik R, Luebeck J, Birmingham A, Bojorquez-Gomez A, Licon K, Klepper K, Pekin D, Beckett AN, Sanchez KS, Thomas A, Kuo CC, Du D, Roguev A, Lewis NE, Chang AN, Kreisberg JF, Krogan N, Qi L, Ideker T, Mali P.

Nat Methods. 2017 Jun;14(6):573-576. doi: 10.1038/nmeth.4225. Epub 2017 Mar 20.


Effect of Chinese medicine treatment based on pattern identification on cellular immunophenotype of myelodysplastic syndrome.

Zhang Y, Qian LL, Shen JP, Chen JF, Gao YT, Xiang JJ, Ye BD, Zhou YH.

Chin J Integr Med. 2017 Jun;23(6):469-473. doi: 10.1007/s11655-016-2276-9. Epub 2016 Dec 9.


Primary Succession of Nitrogen Cycling Microbial Communities Along the Deglaciated Forelands of Tianshan Mountain, China.

Zeng J, Lou K, Zhang CJ, Wang JT, Hu HW, Shen JP, Zhang LM, Han LL, Zhang T, Lin Q, Chalk PM, He JZ.

Front Microbiol. 2016 Aug 30;7:1353. doi: 10.3389/fmicb.2016.01353. eCollection 2016.


Effects of dicyandiamide and acetylene on N2O emissions and ammonia oxidizers in a fluvo-aquic soil applied with urea.

Wang Q, Zhang LM, Shen JP, Du S, Han LL, He JZ.

Environ Sci Pollut Res Int. 2016 Nov;23(22):23023-23033. Epub 2016 Aug 31.


A Network of Conserved Synthetic Lethal Interactions for Exploration of Precision Cancer Therapy.

Srivas R, Shen JP, Yang CC, Sun SM, Li J, Gross AM, Jensen J, Licon K, Bojorquez-Gomez A, Klepper K, Huang J, Pekin D, Xu JL, Yeerna H, Sivaganesh V, Kollenstart L, van Attikum H, Aza-Blanc P, Sobol RW, Ideker T.

Mol Cell. 2016 Aug 4;63(3):514-25. doi: 10.1016/j.molcel.2016.06.022. Epub 2016 Jul 21.


Morphological plasticity of bacteria-Open questions.

Shen JP, Chou CF.

Biomicrofluidics. 2016 Jun 10;10(3):031501. doi: 10.1063/1.4953660. eCollection 2016 May. Review.


[Global change field manipulative experiments and their applications in soil microbial ecology.]

Zhang CJ, He JZ, Shen JP.

Ying Yong Sheng Tai Xue Bao. 2016 May;27(5):1663-1673. doi: 10.13287/j.1001-9332.201605.010. Review. Chinese.


Synthesis of Eupalinilide E, a Promoter of Human Hematopoietic Stem and Progenitor Cell Expansion.

Johnson TC, Chin MR, Han T, Shen JP, Rana T, Siegel D.

J Am Chem Soc. 2016 May 11;138(18):6068-73. doi: 10.1021/jacs.6b03055. Epub 2016 May 2.


Environmental Filtering Process Has More Important Roles than Dispersal Limitation in Shaping Large-Scale Prokaryotic Beta Diversity Patterns of Grassland Soils.

Cao P, Wang JT, Hu HW, Zheng YM, Ge Y, Shen JP, He JZ.

Microb Ecol. 2016 Jul;72(1):221-230. doi: 10.1007/s00248-016-0762-4. Epub 2016 Apr 12.


The beneficial effects of cumulus cells and oocyte-cumulus cell gap junctions depends on oocyte maturation and fertilization methods in mice.

Zhou CJ, Wu SN, Shen JP, Wang DH, Kong XW, Lu A, Li YJ, Zhou HX, Zhao YF, Liang CG.

PeerJ. 2016 Mar 3;4:e1761. doi: 10.7717/peerj.1761. eCollection 2016.


Effect of long-term industrial waste effluent pollution on soil enzyme activities and bacterial community composition.

Subrahmanyam G, Shen JP, Liu YR, Archana G, Zhang LM.

Environ Monit Assess. 2016 Feb;188(2):112. doi: 10.1007/s10661-016-5099-4. Epub 2016 Jan 23.


[Aboveground architecture and biomass distribution of Quercus variabilis].

Yu BY, Zhang WH, Hu XJ, Shen JP, Zhen XY, Yang XZ.

Ying Yong Sheng Tai Xue Bao. 2015 Aug;26(8):2265-72. Chinese.


Changing attitudes toward needle biopsies of breast cancer in Shanghai: experience and current status over the past 8 years.

Hao S, Liu ZB, Ling H, Chen JJ, Shen JP, Yang WT, Shao ZM.

Onco Targets Ther. 2015 Oct 9;8:2865-71. doi: 10.2147/OTT.S87003. eCollection 2015.


Chemogenetic profiling identifies RAD17 as synthetically lethal with checkpoint kinase inhibition.

Shen JP, Srivas R, Gross A, Li J, Jaehnig EJ, Sun SM, Bojorquez-Gomez A, Licon K, Sivaganesh V, Xu JL, Klepper K, Yeerna H, Pekin D, Qiu CP, van Attikum H, Sobol RW, Ideker T.

Oncotarget. 2015 Nov 3;6(34):35755-69. doi: 10.18632/oncotarget.5928.


ERCC1 and TS Expression as Prognostic and Predictive Biomarkers in Metastatic Colon Cancer.

Choueiri MB, Shen JP, Gross AM, Huang JK, Ideker T, Fanta P.

PLoS One. 2015 Jun 17;10(6):e0126898. doi: 10.1371/journal.pone.0126898. eCollection 2015.


[Treatment of myelodysplastic syndrome by hematopoietic stem cell transplantation combined with Chinese medical syndrome typing: a clinical study].

Zhang Y, Ye BD, Qian LL, Gao YT, Wen XW, Shen JP, Zhou YH.

Zhongguo Zhong Xi Yi Jie He Za Zhi. 2015 Jan;35(1):53-6. Chinese.


Combined use of Chinese medicine with allogeneic hematopoietic stem cell transplantation for severe aplastic anemia patients.

Ye BD, Zhang X, Shao KD, Chen D, Zhang Y, Wu DJ, Yu QH, Shen JP, Shen YP, Zhou YH.

Chin J Integr Med. 2014 Dec;20(12):903-9. doi: 10.1007/s11655-014-2026-9. Epub 2014 Nov 27.


Assessment of mouse germinal vesicle stage oocyte quality by evaluating the cumulus layer, zona pellucida, and perivitelline space.

Zhou HX, Ma YZ, Liu YL, Chen Y, Zhou CJ, Wu SN, Shen JP, Liang CG.

PLoS One. 2014 Aug 21;9(8):e105812. doi: 10.1371/journal.pone.0105812. eCollection 2014.


Multi-tiered genomic analysis of head and neck cancer ties TP53 mutation to 3p loss.

Gross AM, Orosco RK, Shen JP, Egloff AM, Carter H, Hofree M, Choueiri M, Coffey CS, Lippman SM, Hayes DN, Cohen EE, Grandis JR, Nguyen QT, Ideker T.

Nat Genet. 2014 Sep;46(9):939-43. doi: 10.1038/ng.3051. Epub 2014 Aug 3.


[Effects and influence factors of dicyandiamide (DCD) application in agricultural ecosystem].

Dai Y, He JZ, Shen JP.

Ying Yong Sheng Tai Xue Bao. 2014 Jan;25(1):279-86. Review. Chinese.


The relationship of sex hormone-binding globulin (SHBG) gene polymorphisms with serum SHBG level and metabolic syndrome in Chinese Han males.

Pang XN, Yuan Y, Sun Y, Shen JP, Zha XY, Hu Y.

Aging Clin Exp Res. 2014 Dec;26(6):583-9. doi: 10.1007/s40520-014-0215-1. Epub 2014 Mar 27.


Response of ammonia-oxidizing archaea and bacteria to long-term industrial effluent-polluted soils, Gujarat, Western India.

Subrahmanyam G, Shen JP, Liu YR, Archana G, He JZ.

Environ Monit Assess. 2014 Jul;186(7):4037-50. doi: 10.1007/s10661-014-3678-9. Epub 2014 Feb 20.


Bone marrow angiogenesis in patients presenting with differential Chinese medicine syndrome: correlation with the clinico-pathological features of aplastic anemia.

Wu DJ, Ye BD, Hu ZP, Shen YP, Shen JP, Lin SY, Chen MT, Liu YL, Zhou YH.

Chin J Integr Med. 2013 Dec;19(12):905-12. doi: 10.1007/s11655-013-1652-y. Epub 2013 Dec 5.


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