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Items: 41

1.

Earth history and the passerine superradiation.

Oliveros CH, Field DJ, Ksepka DT, Barker FK, Aleixo A, Andersen MJ, Alström P, Benz BW, Braun EL, Braun MJ, Bravo GA, Brumfield RT, Chesser RT, Claramunt S, Cracraft J, Cuervo AM, Derryberry EP, Glenn TC, Harvey MG, Hosner PA, Joseph L, Kimball RT, Mack AL, Miskelly CM, Peterson AT, Robbins MB, Sheldon FH, Silveira LF, Smith BT, White ND, Moyle RG, Faircloth BC.

Proc Natl Acad Sci U S A. 2019 Apr 16;116(16):7916-7925. doi: 10.1073/pnas.1813206116. Epub 2019 Apr 1.

2.

Genomic data resolve gene tree discordance in spiderhunters (Nectariniidae, Arachnothera).

Campillo LC, Oliveros CH, Sheldon FH, Moyle RG.

Mol Phylogenet Evol. 2018 Mar;120:151-157. doi: 10.1016/j.ympev.2017.12.011. Epub 2017 Dec 11.

PMID:
29242166
3.

Tapping the woodpecker tree for evolutionary insight.

Shakya SB, Fuchs J, Pons JM, Sheldon FH.

Mol Phylogenet Evol. 2017 Nov;116:182-191. doi: 10.1016/j.ympev.2017.09.005. Epub 2017 Sep 7.

PMID:
28890006
4.

Evolutionary and ecological forces influencing population diversification in Bornean montane passerines.

Chua VL, Smith BT, Burner RC, Rahman MA, Lakim M, Prawiradilaga DM, Moyle RG, Sheldon FH.

Mol Phylogenet Evol. 2017 Aug;113:139-149. doi: 10.1016/j.ympev.2017.05.016. Epub 2017 May 22.

PMID:
28545973
5.

A genome-wide assessment of stages of elevational parapatry in Bornean passerine birds reveals no introgression: implications for processes and patterns of speciation.

Moyle RG, Manthey JD, Hosner PA, Rahman M, Lakim M, Sheldon FH.

PeerJ. 2017 May 18;5:e3335. doi: 10.7717/peerj.3335. eCollection 2017.

6.

Why Do Phylogenomic Data Sets Yield Conflicting Trees? Data Type Influences the Avian Tree of Life more than Taxon Sampling.

Reddy S, Kimball RT, Pandey A, Hosner PA, Braun MJ, Hackett SJ, Han KL, Harshman J, Huddleston CJ, Kingston S, Marks BD, Miglia KJ, Moore WS, Sheldon FH, Witt CC, Yuri T, Braun EL.

Syst Biol. 2017 Sep 1;66(5):857-879. doi: 10.1093/sysbio/syx041.

PMID:
28369655
7.

The database of the PREDICTS (Projecting Responses of Ecological Diversity In Changing Terrestrial Systems) project.

Hudson LN, Newbold T, Contu S, Hill SL, Lysenko I, De Palma A, Phillips HR, Alhusseini TI, Bedford FE, Bennett DJ, Booth H, Burton VJ, Chng CW, Choimes A, Correia DL, Day J, Echeverría-Londoño S, Emerson SR, Gao D, Garon M, Harrison ML, Ingram DJ, Jung M, Kemp V, Kirkpatrick L, Martin CD, Pan Y, Pask-Hale GD, Pynegar EL, Robinson AN, Sanchez-Ortiz K, Senior RA, Simmons BI, White HJ, Zhang H, Aben J, Abrahamczyk S, Adum GB, Aguilar-Barquero V, Aizen MA, Albertos B, Alcala EL, Del Mar Alguacil M, Alignier A, Ancrenaz M, Andersen AN, Arbeláez-Cortés E, Armbrecht I, Arroyo-Rodríguez V, Aumann T, Axmacher JC, Azhar B, Azpiroz AB, Baeten L, Bakayoko A, Báldi A, Banks JE, Baral SK, Barlow J, Barratt BI, Barrico L, Bartolommei P, Barton DM, Basset Y, Batáry P, Bates AJ, Baur B, Bayne EM, Beja P, Benedick S, Berg Å, Bernard H, Berry NJ, Bhatt D, Bicknell JE, Bihn JH, Blake RJ, Bobo KS, Bóçon R, Boekhout T, Böhning-Gaese K, Bonham KJ, Borges PA, Borges SH, Boutin C, Bouyer J, Bragagnolo C, Brandt JS, Brearley FQ, Brito I, Bros V, Brunet J, Buczkowski G, Buddle CM, Bugter R, Buscardo E, Buse J, Cabra-García J, Cáceres NC, Cagle NL, Calviño-Cancela M, Cameron SA, Cancello EM, Caparrós R, Cardoso P, Carpenter D, Carrijo TF, Carvalho AL, Cassano CR, Castro H, Castro-Luna AA, Rolando CB, Cerezo A, Chapman KA, Chauvat M, Christensen M, Clarke FM, Cleary DF, Colombo G, Connop SP, Craig MD, Cruz-López L, Cunningham SA, D'Aniello B, D'Cruze N, da Silva PG, Dallimer M, Danquah E, Darvill B, Dauber J, Davis AL, Dawson J, de Sassi C, de Thoisy B, Deheuvels O, Dejean A, Devineau JL, Diekötter T, Dolia JV, Domínguez E, Dominguez-Haydar Y, Dorn S, Draper I, Dreber N, Dumont B, Dures SG, Dynesius M, Edenius L, Eggleton P, Eigenbrod F, Elek Z, Entling MH, Esler KJ, de Lima RF, Faruk A, Farwig N, Fayle TM, Felicioli A, Felton AM, Fensham RJ, Fernandez IC, Ferreira CC, Ficetola GF, Fiera C, Filgueiras BK, Fırıncıoğlu HK, Flaspohler D, Floren A, Fonte SJ, Fournier A, Fowler RE, Franzén M, Fraser LH, Fredriksson GM, Freire GB Jr, Frizzo TL, Fukuda D, Furlani D, Gaigher R, Ganzhorn JU, García KP, Garcia-R JC, Garden JG, Garilleti R, Ge BM, Gendreau-Berthiaume B, Gerard PJ, Gheler-Costa C, Gilbert B, Giordani P, Giordano S, Golodets C, Gomes LG, Gould RK, Goulson D, Gove AD, Granjon L, Grass I, Gray CL, Grogan J, Gu W, Guardiola M, Gunawardene NR, Gutierrez AG, Gutiérrez-Lamus DL, Haarmeyer DH, Hanley ME, Hanson T, Hashim NR, Hassan SN, Hatfield RG, Hawes JE, Hayward MW, Hébert C, Helden AJ, Henden JA, Henschel P, Hernández L, Herrera JP, Herrmann F, Herzog F, Higuera-Diaz D, Hilje B, Höfer H, Hoffmann A, Horgan FG, Hornung E, Horváth R, Hylander K, Isaacs-Cubides P, Ishida H, Ishitani M, Jacobs CT, Jaramillo VJ, Jauker B, Hernández FJ, Johnson MF, Jolli V, Jonsell M, Juliani SN, Jung TS, Kapoor V, Kappes H, Kati V, Katovai E, Kellner K, Kessler M, Kirby KR, Kittle AM, Knight ME, Knop E, Kohler F, Koivula M, Kolb A, Kone M, Kőrösi Á, Krauss J, Kumar A, Kumar R, Kurz DJ, Kutt AS, Lachat T, Lantschner V, Lara F, Lasky JR, Latta SC, Laurance WF, Lavelle P, Le Féon V, LeBuhn G, Légaré JP, Lehouck V, Lencinas MV, Lentini PE, Letcher SG, Li Q, Litchwark SA, Littlewood NA, Liu Y, Lo-Man-Hung N, López-Quintero CA, Louhaichi M, Lövei GL, Lucas-Borja ME, Luja VH, Luskin MS, MacSwiney G MC, Maeto K, Magura T, Mallari NA, Malone LA, Malonza PK, Malumbres-Olarte J, Mandujano S, Måren IE, Marin-Spiotta E, Marsh CJ, Marshall EJ, Martínez E, Martínez Pastur G, Moreno Mateos D, Mayfield MM, Mazimpaka V, McCarthy JL, McCarthy KP, McFrederick QS, McNamara S, Medina NG, Medina R, Mena JL, Mico E, Mikusinski G, Milder JC, Miller JR, Miranda-Esquivel DR, Moir ML, Morales CL, Muchane MN, Muchane M, Mudri-Stojnic S, Munira AN, Muoñz-Alonso A, Munyekenye BF, Naidoo R, Naithani A, Nakagawa M, Nakamura A, Nakashima Y, Naoe S, Nates-Parra G, Navarrete Gutierrez DA, Navarro-Iriarte L, Ndang'ang'a PK, Neuschulz EL, Ngai JT, Nicolas V, Nilsson SG, Noreika N, Norfolk O, Noriega JA, Norton DA, Nöske NM, Nowakowski AJ, Numa C, O'Dea N, O'Farrell PJ, Oduro W, Oertli S, Ofori-Boateng C, Oke CO, Oostra V, Osgathorpe LM, Otavo SE, Page NV, Paritsis J, Parra-H A, Parry L, Pe'er G, Pearman PB, Pelegrin N, Pélissier R, Peres CA, Peri PL, Persson AS, Petanidou T, Peters MK, Pethiyagoda RS, Phalan B, Philips TK, Pillsbury FC, Pincheira-Ulbrich J, Pineda E, Pino J, Pizarro-Araya J, Plumptre AJ, Poggio SL, Politi N, Pons P, Poveda K, Power EF, Presley SJ, Proença V, Quaranta M, Quintero C, Rader R, Ramesh BR, Ramirez-Pinilla MP, Ranganathan J, Rasmussen C, Redpath-Downing NA, Reid JL, Reis YT, Rey Benayas JM, Rey-Velasco JC, Reynolds C, Ribeiro DB, Richards MH, Richardson BA, Richardson MJ, Ríos RM, Robinson R, Robles CA, Römbke J, Romero-Duque LP, Rös M, Rosselli L, Rossiter SJ, Roth DS, Roulston TH, Rousseau L, Rubio AV, Ruel JC, Sadler JP, Sáfián S, Saldaña-Vázquez RA, Sam K, Samnegård U, Santana J, Santos X, Savage J, Schellhorn NA, Schilthuizen M, Schmiedel U, Schmitt CB, Schon NL, Schüepp C, Schumann K, Schweiger O, Scott DM, Scott KA, Sedlock JL, Seefeldt SS, Shahabuddin G, Shannon G, Sheil D, Sheldon FH, Shochat E, Siebert SJ, Silva FA, Simonetti JA, Slade EM, Smith J, Smith-Pardo AH, Sodhi NS, Somarriba EJ, Sosa RA, Soto Quiroga G, St-Laurent MH, Starzomski BM, Stefanescu C, Steffan-Dewenter I, Stouffer PC, Stout JC, Strauch AM, Struebig MJ, Su Z, Suarez-Rubio M, Sugiura S, Summerville KS, Sung YH, Sutrisno H, Svenning JC, Teder T, Threlfall CG, Tiitsaar A, Todd JH, Tonietto RK, Torre I, Tóthmérész B, Tscharntke T, Turner EC, Tylianakis JM, Uehara-Prado M, Urbina-Cardona N, Vallan D, Vanbergen AJ, Vasconcelos HL, Vassilev K, Verboven HA, Verdasca MJ, Verdú JR, Vergara CH, Vergara PM, Verhulst J, Virgilio M, Vu LV, Waite EM, Walker TR, Wang HF, Wang Y, Watling JI, Weller B, Wells K, Westphal C, Wiafe ED, Williams CD, Willig MR, Woinarski JC, Wolf JH, Wolters V, Woodcock BA, Wu J, Wunderle JM Jr, Yamaura Y, Yoshikura S, Yu DW, Zaitsev AS, Zeidler J, Zou F, Collen B, Ewers RM, Mace GM, Purves DW, Scharlemann JP, Purvis A.

Ecol Evol. 2016 Dec 16;7(1):145-188. doi: 10.1002/ece3.2579. eCollection 2017 Jan.

8.

Foraging ecology and occurrence of 7 sympatric babbler species (Timaliidae) in the lowland rainforest of Borneo and peninsular Malaysia.

Styring AR, Ragai R, Zakaria M, Sheldon FH.

Curr Zool. 2016 Aug;62(4):345-355. doi: 10.1093/cz/zow022. Epub 2016 Mar 14.

9.

Whole-genome analyses resolve early branches in the tree of life of modern birds.

Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, Li H, Zhou L, Narula N, Liu L, Ganapathy G, Boussau B, Bayzid MS, Zavidovych V, Subramanian S, Gabaldón T, Capella-Gutiérrez S, Huerta-Cepas J, Rekepalli B, Munch K, Schierup M, Lindow B, Warren WC, Ray D, Green RE, Bruford MW, Zhan X, Dixon A, Li S, Li N, Huang Y, Derryberry EP, Bertelsen MF, Sheldon FH, Brumfield RT, Mello CV, Lovell PV, Wirthlin M, Schneider MP, Prosdocimi F, Samaniego JA, Vargas Velazquez AM, Alfaro-Núñez A, Campos PF, Petersen B, Sicheritz-Ponten T, Pas A, Bailey T, Scofield P, Bunce M, Lambert DM, Zhou Q, Perelman P, Driskell AC, Shapiro B, Xiong Z, Zeng Y, Liu S, Li Z, Liu B, Wu K, Xiao J, Yinqi X, Zheng Q, Zhang Y, Yang H, Wang J, Smeds L, Rheindt FE, Braun M, Fjeldsa J, Orlando L, Barker FK, Jønsson KA, Johnson W, Koepfli KP, O'Brien S, Haussler D, Ryder OA, Rahbek C, Willerslev E, Graves GR, Glenn TC, McCormack J, Burt D, Ellegren H, Alström P, Edwards SV, Stamatakis A, Mindell DP, Cracraft J, Braun EL, Warnow T, Jun W, Gilbert MT, Zhang G.

Science. 2014 Dec 12;346(6215):1320-31. doi: 10.1126/science.1253451.

10.

Parsimony and model-based analyses of indels in avian nuclear genes reveal congruent and incongruent phylogenetic signals.

Yuri T, Kimball RT, Harshman J, Bowie RC, Braun MJ, Chojnowski JL, Han KL, Hackett SJ, Huddleston CJ, Moore WS, Reddy S, Sheldon FH, Steadman DW, Witt CC, Braun EL.

Biology (Basel). 2013 Mar 13;2(1):419-44. doi: 10.3390/biology2010419.

11.

Genetic divergence and population demography of the Hainan endemic Black-throated Laughingthrush (Aves: Timaliidae, Garrulax chinensis monachus) and adjacent mainland subspecies.

Wu Y, Huang J, Zhang M, Luo S, Zhang Y, Lei F, Sheldon FH, Zou F.

Mol Phylogenet Evol. 2012 Nov;65(2):482-9. doi: 10.1016/j.ympev.2012.07.005. Epub 2012 Jul 20.

PMID:
22820021
12.

Species trees for the tree swallows (Genus Tachycineta): an alternative phylogenetic hypothesis to the mitochondrial gene tree.

Dor R, Carling MD, Lovette IJ, Sheldon FH, Winkler DW.

Mol Phylogenet Evol. 2012 Oct;65(1):317-22. doi: 10.1016/j.ympev.2012.06.020. Epub 2012 Jun 30.

PMID:
22750631
13.

Molecular phylogeny and insular biogeography of the lowland tailorbirds of Southeast Asia (Cisticolidae: Orthotomus).

Sheldon FH, Oliveros CH, Taylor SS, McKay B, Lim HC, Abdul Rahman M, Mays H, Moyle RG.

Mol Phylogenet Evol. 2012 Oct;65(1):54-63. doi: 10.1016/j.ympev.2012.05.023. Epub 2012 Jun 9.

PMID:
22687636
14.

Multilocus analysis of the evolutionary dynamics of rainforest bird populations in Southeast Asia.

Lim HC, Sheldon FH.

Mol Ecol. 2011 Aug;20(16):3414-38. doi: 10.1111/j.1365-294X.2011.05190.x. Epub 2011 Jul 21.

PMID:
21777318
15.

Homoplastic microinversions and the avian tree of life.

Braun EL, Kimball RT, Han KL, Iuhasz-Velez NR, Bonilla AJ, Chojnowski JL, Smith JV, Bowie RC, Braun MJ, Hackett SJ, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Reddy S, Sheldon FH, Witt CC, Yuri T.

BMC Evol Biol. 2011 May 25;11:141. doi: 10.1186/1471-2148-11-141.

16.

Are transposable element insertions homoplasy free?: an examination using the avian tree of life.

Han KL, Braun EL, Kimball RT, Reddy S, Bowie RC, Braun MJ, Chojnowski JL, Hackett SJ, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Sheldon FH, Steadman DW, Witt CC, Yuri T.

Syst Biol. 2011 May;60(3):375-86. doi: 10.1093/sysbio/syq100. Epub 2011 Feb 8. No abstract available.

PMID:
21303823
17.

Phylogeny and biogeography of the Asian trogons (Aves: Trogoniformes) inferred from nuclear and mitochondrial DNA sequences.

Hosner PA, Sheldon FH, Lim HC, Moyle RG.

Mol Phylogenet Evol. 2010 Dec;57(3):1219-25. doi: 10.1016/j.ympev.2010.09.008. Epub 2010 Sep 19.

PMID:
20858547
18.

Revisiting Wallace's haunt: coalescent simulations and comparative niche modeling reveal historical mechanisms that promoted avian population divergence in the Malay Archipelago.

Lim HC, Rahman MA, Lim SL, Moyle RG, Sheldon FH.

Evolution. 2011 Feb;65(2):321-34. doi: 10.1111/j.1558-5646.2010.01105.x. Epub 2010 Sep 29.

PMID:
20796023
19.

Towards an assessment of character interdependence in avian RNA phylogenetics: a general secondary structure model for the avian mitochondrial 16S rRNA.

do Amaral FR, Sheldon FH, Wajntal A.

Mol Phylogenet Evol. 2010 Jul;56(1):498-506. doi: 10.1016/j.ympev.2010.03.016. Epub 2010 Mar 17. No abstract available.

PMID:
20302954
20.

Phylogeny of the genus Hirundo and the Barn Swallow subspecies complex.

Dor R, Safran RJ, Sheldon FH, Winkler DW, Lovette IJ.

Mol Phylogenet Evol. 2010 Jul;56(1):409-18. doi: 10.1016/j.ympev.2010.02.008. Epub 2010 Feb 10.

PMID:
20152914
21.

Patterns and processes of diversification in a widespread and ecologically diverse avian group, the buteonine hawks (Aves, Accipitridae).

do Amaral FR, Sheldon FH, Gamauf A, Haring E, Riesing M, Silveira LF, Wajntal A.

Mol Phylogenet Evol. 2009 Dec;53(3):703-15. doi: 10.1016/j.ympev.2009.07.020. Epub 2009 Jul 25.

PMID:
19635577
22.

A well-tested set of primers to amplify regions spread across the avian genome.

Kimball RT, Braun EL, Barker FK, Bowie RC, Braun MJ, Chojnowski JL, Hackett SJ, Han KL, Harshman J, Heimer-Torres V, Holznagel W, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Reddy S, Sheldon FH, Smith JV, Witt CC, Yuri T.

Mol Phylogenet Evol. 2009 Mar;50(3):654-60. doi: 10.1016/j.ympev.2008.11.018. Epub 2008 Dec 6. No abstract available.

PMID:
19084073
23.

Phylogenomic evidence for multiple losses of flight in ratite birds.

Harshman J, Braun EL, Braun MJ, Huddleston CJ, Bowie RC, Chojnowski JL, Hackett SJ, Han KL, Kimball RT, Marks BD, Miglia KJ, Moore WS, Reddy S, Sheldon FH, Steadman DW, Steppan SJ, Witt CC, Yuri T.

Proc Natl Acad Sci U S A. 2008 Sep 9;105(36):13462-7. doi: 10.1073/pnas.0803242105. Epub 2008 Sep 2.

24.

A phylogenomic study of birds reveals their evolutionary history.

Hackett SJ, Kimball RT, Reddy S, Bowie RC, Braun EL, Braun MJ, Chojnowski JL, Cox WA, Han KL, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Sheldon FH, Steadman DW, Witt CC, Yuri T.

Science. 2008 Jun 27;320(5884):1763-8. doi: 10.1126/science.1157704.

25.

Molecular phylogenetic analysis of the Grey-cheeked Fulvetta (Alcippe morrisonia) of China and Indochina: a case of remarkable genetic divergence in a "species".

Zou F, Lim HC, Marks BD, Moyle RG, Sheldon FH.

Mol Phylogenet Evol. 2007 Jul;44(1):165-74. Epub 2006 Dec 20. Erratum in: Mol Phylogenet Evol. 2008 Oct;49(1):410.

PMID:
17300964
26.

Reconsideration of the phylogenetic relationships of the enigmatic Bornean Bristlehead (Pityriasis gymnocephala).

Moyle RG, Cracraft J, Lakim M, Nais J, Sheldon FH.

Mol Phylogenet Evol. 2006 Jun;39(3):893-8. Epub 2006 Mar 9. No abstract available.

PMID:
16524745
27.

Academy of Natural Sciences: job cuts.

Sheldon FH, Remsen JV, Brumfield RT.

Science. 2005 Mar 11;307(5715):1560. No abstract available.

PMID:
15765558
28.

Academy of Natural Sciences: Job Cuts.

Lapolla JS, Sheldon FH, Remsen JV, Brumfield RT, Baker DJ.

Science. 2005 Mar 11;307(5715):1560b. No abstract available.

PMID:
15764586
29.

Phylogeny of swallows (Aves: Hirundinidae) estimated from nuclear and mitochondrial DNA sequences.

Sheldon FH, Whittingham LA, Moyle RG, Slikas B, Winkler DW.

Mol Phylogenet Evol. 2005 Apr;35(1):254-70. Epub 2005 Jan 20.

PMID:
15737595
30.

Phylogeny of the tree swallow genus, Tachycineta (Aves: Hirundinidae), by Bayesian analysis of mitochondrial DNA sequences.

Whittingham LA, Slikas B, Winkler DW, Sheldon FH.

Mol Phylogenet Evol. 2002 Mar;22(3):430-41.

PMID:
11884168
31.

Relative patterns and rates of evolution in heron nuclear and mitochondrial DNA.

Sheldon FH, Jones CE, McCracken KG.

Mol Biol Evol. 2000 Mar;17(3):437-50.

PMID:
10723744
32.
33.

A comparison of cytochrome b and DNA hybridization data bearing on the phylogeny of swallows (Aves: Hirundinidae).

Sheldon FH, Whittingham LA, Winkler DW.

Mol Phylogenet Evol. 1999 Mar;11(2):320-31.

PMID:
10191076
34.

Avian vocalizations and phylogenetic signal.

McCracken KG, Sheldon FH.

Proc Natl Acad Sci U S A. 1997 Apr 15;94(8):3833-6.

35.
36.

Evolution of nest construction in swallows (Hirundinidae): a molecular phylogenetic perspective.

Winkler DW, Sheldon FH.

Proc Natl Acad Sci U S A. 1993 Jun 15;90(12):5705-7.

37.

The birds reclassified.

Gill FB, Sheldon FH.

Science. 1991 May 17;252(5008):1003-5. No abstract available.

PMID:
17843254
38.

Molecular homology and DNA hybridization.

Bledsoe AH, Sheldon FH.

J Mol Evol. 1990 May;30(5):425-33. Review.

PMID:
2111855
39.

Indexes to the reassociation and stability of solution DNA hybrids.

Sheldon FH, Bledsoe AH.

J Mol Evol. 1989 Oct;29(4):328-43.

PMID:
2514274
40.

DNA-DNA hybridization evidence of the rapid rate of muroid rodent DNA evolution.

Catzeflis FM, Sheldon FH, Ahlquist JE, Sibley CG.

Mol Biol Evol. 1987 May;4(3):242-53.

PMID:
3447010
41.

Rates of single-copy DNA evolution in herons.

Sheldon FH.

Mol Biol Evol. 1987 Jan;4(1):56-69.

PMID:
3447003

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