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Integrating hydrogen-deuterium exchange mass spectrometry with molecular dynamics simulations to probe lipid-modulated conformational changes in membrane proteins.

Martens C, Shekhar M, Lau AM, Tajkhorshid E, Politis A.

Nat Protoc. 2019 Oct 11. doi: 10.1038/s41596-019-0219-6. [Epub ahead of print]


Effect of community-initiated kangaroo mother care on survival of infants with low birthweight: a randomised controlled trial.

Mazumder S, Taneja S, Dube B, Bhatia K, Ghosh R, Shekhar M, Sinha B, Bahl R, Martines J, Bhan MK, Sommerfelt H, Bhandari N.

Lancet. 2019 Oct 4. pii: S0140-6736(19)32223-8. doi: 10.1016/S0140-6736(19)32223-8. [Epub ahead of print]


Temporal changes in transcriptome profile provide insights of White Spot Syndrome Virus infection in Litopenaeus vannamei.

Peruzza L, Shekhar MS, Kumar KV, Swathi A, Karthic K, Hauton C, Vijayan KK.

Sci Rep. 2019 Sep 18;9(1):13509. doi: 10.1038/s41598-019-49836-0.


Size threshold for follow-up of postmenopausal adnexal cysts: 1 cm versus 3 cm.

Jha P, Shekhar M, Goldstein R, Morgan T, Poder L.

Abdom Radiol (NY). 2019 Aug 8. doi: 10.1007/s00261-019-02176-z. [Epub ahead of print]


Comparative analysis of shrimp (Penaeus vannamei) miRNAs expression profiles during WSSV infection under experimental conditions and in pond culture.

Shekhar MS, Karthic K, Kumar KV, Kumar JA, Swathi A, Hauton C, Peruzza L, Vijayan KK.

Fish Shellfish Immunol. 2019 Oct;93:288-295. doi: 10.1016/j.fsi.2019.07.057. Epub 2019 Jul 19.


Correction to "Allosteric Interactions in Human Cytochrome P450 CYP3A4: The Role of Phenylalanine 213".

Denisov IG, Grinkova YV, Nandigrami P, Shekhar M, Tajkhorshid E, Sligar SG.

Biochemistry. 2019 Jun 18;58(24):2796. doi: 10.1021/acs.biochem.9b00438. Epub 2019 Jun 6. No abstract available.


Allosteric Interactions in Human Cytochrome P450 CYP3A4: The Role of Phenylalanine 213.

Denisov IG, Grinkova YV, Nandigrami P, Shekhar M, Tajkhorshid E, Sligar SG.

Biochemistry. 2019 Mar 12;58(10):1411-1422. doi: 10.1021/acs.biochem.8b01268. Epub 2019 Feb 28. Erratum in: Biochemistry. 2019 Jun 18;58(24):2796.


Corrigendum to "Gold nanoparticle conjugated Rad6 inhibitor induces cell death in triple negative breast cancer cells by inducing mitochondrial dysfunction and PARP-1 hyperactivation: Synthesis and characterization" [Nanomedicine 12 (3) (2016), 745-757].

Haynes B, Zhang Y, Liu F, Li J, Petit S, Kothayer H, Bao X, Westwell AD, Mao G, Shekhar MP.

Nanomedicine. 2019 Jun;18:426. doi: 10.1016/j.nano.2019.01.005. Epub 2019 Feb 3. No abstract available.


Visual Acuity Outcomes in Resident-Performed Manual Small-Incision Cataract Surgery.

Gupta S, Haripriya A, Vardhan S A, Ravilla T, Ravindran RD, Shekhar M.

Ophthalmology. 2019 May;126(5):764-765. doi: 10.1016/j.ophtha.2018.12.036. Epub 2019 Jan 25. No abstract available.


Comparison of Various Severity Assessment Scoring Systems in Patients with Sepsis in a Tertiary Care Teaching Hospital.

Badrinath K, Shekhar M, Sreelakshmi M, Srinivasan M, Thunga G, Nair S, Nileshwar KR, Balakrishnan A, Kunhikatta V.

Indian J Crit Care Med. 2018 Dec;22(12):842-845. doi: 10.4103/ijccm.IJCCM_322_18.


Erratum: Functional analysis of MKP-1 and MKP-2 in breast cancer tamoxifen sensitivity.

Haagenson KK, Zhang JW, Xu Z, Shekhar MPV, Wu GS.

Oncotarget. 2018 Oct 16;9(81):35286. doi: 10.18632/oncotarget.26258. eCollection 2018 Oct 16.


Sensory noise increases metacognitive efficiency.

Bang JW, Shekhar M, Rahnev D.

J Exp Psychol Gen. 2019 Mar;148(3):437-452. doi: 10.1037/xge0000511. Epub 2018 Nov 1.


The Aravind Pseudoexfoliation Study: Surgical and First-Year Postoperative Results in Eyes without Phacodonesis and Nonmiotic Pupils.

Haripriya A, Ramulu PY, Chandrashekharan S, Venkatesh R, Narendran K, Shekhar M, Ramakrishnan R, Ravindran RD, Robin AL.

Ophthalmology. 2019 Mar;126(3):362-371. doi: 10.1016/j.ophtha.2018.10.027. Epub 2018 Oct 17.


Direct protein-lipid interactions shape the conformational landscape of secondary transporters.

Martens C, Shekhar M, Borysik AJ, Lau AM, Reading E, Tajkhorshid E, Booth PJ, Politis A.

Nat Commun. 2018 Oct 8;9(1):4151. doi: 10.1038/s41467-018-06704-1.


Nano-delivery of RAD6/Translesion Synthesis Inhibitor SMI#9 for Triple-negative Breast Cancer Therapy.

Saadat N, Liu F, Haynes B, Nangia-Makker P, Bao X, Li J, Polin LA, Gupta S, Mao G, Shekhar MP.

Mol Cancer Ther. 2018 Dec;17(12):2586-2597. doi: 10.1158/1535-7163.MCT-18-0364. Epub 2018 Sep 21.


Computational investigation of binding mechanism of substituted pyrazinones targeting corticotropin releasing factor-1 receptor deliberated for anti-depressant drug design.

Shekhar MS, Venkatachalam T, Sharma CS, Pratap Singh H, Kalra S, Kumar N.

J Biomol Struct Dyn. 2019 Aug;37(12):3226-3244. doi: 10.1080/07391102.2018.1513379. Epub 2018 Dec 24.


Constructing atomic structural models into cryo-EM densities using molecular dynamics - Pros and cons.

Wang Y, Shekhar M, Thifault D, Williams CJ, McGreevy R, Richardson J, Singharoy A, Tajkhorshid E.

J Struct Biol. 2018 Nov;204(2):319-328. doi: 10.1016/j.jsb.2018.08.003. Epub 2018 Aug 7.


Microscopic view of lipids and their diverse biological functions.

Wen PC, Mahinthichaichan P, Trebesch N, Jiang T, Zhao Z, Shinn E, Wang Y, Shekhar M, Kapoor K, Chan CK, Tajkhorshid E.

Curr Opin Struct Biol. 2018 Aug;51:177-186. doi: 10.1016/ Epub 2018 Jul 23. Review.


Genome size estimation of brackishwater fishes and penaeid shrimps by flow cytometry.

Swathi A, Shekhar MS, Katneni VK, Vijayan KK.

Mol Biol Rep. 2018 Oct;45(5):951-960. doi: 10.1007/s11033-018-4243-3. Epub 2018 Jul 14.


High frequency abrupt shifts in the Indian summer monsoon since Younger Dryas in the Himalaya.

Ali SN, Dubey J, Ghosh R, Quamar MF, Sharma A, Morthekai P, Dimri AP, Shekhar M, Arif M, Agrawal S.

Sci Rep. 2018 Jun 18;8(1):9287. doi: 10.1038/s41598-018-27597-6.


Distinguishing the Roles of Dorsolateral and Anterior PFC in Visual Metacognition.

Shekhar M, Rahnev D.

J Neurosci. 2018 May 30;38(22):5078-5087. doi: 10.1523/JNEUROSCI.3484-17.2018. Epub 2018 May 2.


Costing of three feeding regimens for home-based management of children with uncomplicated severe acute malnutrition from a randomised trial in India.

Garg CC, Mazumder S, Taneja S, Shekhar M, Mohan SB, Bose A, Iyengar SD, Bahl R, Martines J, Bhandari N.

BMJ Glob Health. 2018 Mar 6;3(2):e000702. doi: 10.1136/bmjgh-2017-000702. eCollection 2018.


Kangaroo mother care: using formative research to design an acceptable community intervention.

Mazumder S, Upadhyay RP, Hill Z, Taneja S, Dube B, Kaur J, Shekhar M, Ghosh R, Bisht S, Martines JC, Bahl R, Sommerfelt H, Bhandari N.

BMC Public Health. 2018 Mar 2;18(1):307. doi: 10.1186/s12889-018-5197-z.


First Report of a Complete Genome Sequence of White spot syndrome virus from India.

Vinaya Kumar K, Shekhar MS, Otta SK, Karthic K, Ashok Kumar J, Gopikrishna G, Vijayan KK.

Genome Announc. 2018 Feb 22;6(8). pii: e00055-18. doi: 10.1128/genomeA.00055-18.


Comparative study of qualitative and quantitative methods to determine toxicity level of Aspergillus flavus isolates in maize.

Shekhar M, Singh N, Dutta R, Kumar S, Mahajan V.

PLoS One. 2017 Dec 15;12(12):e0189760. doi: 10.1371/journal.pone.0189760. eCollection 2017.


Effect of immune gene silencing in WSSV infected tiger shrimp Penaeus monodon.

Shekhar MS, Gomathi A, Dubey NK, Vinaya Kumar K, Vijayan KK.

Fish Shellfish Immunol. 2017 Nov;70:252-259. doi: 10.1016/j.fsi.2017.09.019. Epub 2017 Sep 5.


Himalayan glaciers experienced significant mass loss during later phases of little ice age.

Shekhar M, Bhardwaj A, Singh S, Ranhotra PS, Bhattacharyya A, Pal AK, Roy I, Martín-Torres FJ, Zorzano MP.

Sci Rep. 2017 Sep 4;7(1):10305. doi: 10.1038/s41598-017-09212-2.


Activation and Desensitization Mechanism of AMPA Receptor-TARP Complex by Cryo-EM.

Chen S, Zhao Y, Wang Y, Shekhar M, Tajkhorshid E, Gouaux E.

Cell. 2017 Sep 7;170(6):1234-1246.e14. doi: 10.1016/j.cell.2017.07.045. Epub 2017 Aug 17.


Breast cancer complexity: implications of intratumoral heterogeneity in clinical management.

Haynes B, Sarma A, Nangia-Makker P, Shekhar MP.

Cancer Metastasis Rev. 2017 Sep;36(3):547-555. doi: 10.1007/s10555-017-9684-y. Review.


Sustained drug release from surface modified UHMWPE for acetabular cup lining in total hip implant.

Manoj Kumar R, Gupta P, Sharma SK, Mittal A, Shekhar M, Kumar V, Manoj Kumar BV, Roy P, Lahiri D.

Mater Sci Eng C Mater Biol Appl. 2017 Aug 1;77:649-661. doi: 10.1016/j.msec.2017.03.221. Epub 2017 Mar 25.


Pharmacological targeting of RAD6 enzyme-mediated translesion synthesis overcomes resistance to platinum-based drugs.

Sanders MA, Haynes B, Nangia-Makker P, Polin LA, Shekhar MP.

J Biol Chem. 2017 Jun 23;292(25):10347-10363. doi: 10.1074/jbc.M117.792192. Epub 2017 May 10.


Structural basis of co-translational quality control by ArfA and RF2 bound to ribosome.

Zeng F, Chen Y, Remis J, Shekhar M, Phillips JC, Tajkhorshid E, Jin H.

Nature. 2017 Jan 26;541(7638):554-557. doi: 10.1038/nature21053. Epub 2017 Jan 11.


Long-term Posterior Capsule Opacification Reduction with Square-Edge Polymethylmethacrylate Intraocular Lens: Randomized Controlled Study.

Haripriya A, Chang DF, Vijayakumar B, Niraj A, Shekhar M, Tanpreet S, Aravind S.

Ophthalmology. 2017 Mar;124(3):295-302. doi: 10.1016/j.ophtha.2016.11.010. Epub 2017 Jan 5.


Diffuse thyroid metastases and bilateral internal jugular vein tumor thrombus from renal cell cancer.

Jha P, Shekhar M, Wan J, Mari-Aparici C.

Radiol Case Rep. 2016 Sep 28;11(4):434-437. eCollection 2016 Dec.


X-ray structures define human P2X(3) receptor gating cycle and antagonist action.

Mansoor SE, Lü W, Oosterheert W, Shekhar M, Tajkhorshid E, Gouaux E.

Nature. 2016 Oct 6;538(7623):66-71. doi: 10.1038/nature19367. Epub 2016 Sep 14.


Microscopic Characterization of Membrane Transporter Function by In Silico Modeling and Simulation.

Vermaas JV, Trebesch N, Mayne CG, Thangapandian S, Shekhar M, Mahinthichaichan P, Baylon JL, Jiang T, Wang Y, Muller MP, Shinn E, Zhao Z, Wen PC, Tajkhorshid E.

Methods Enzymol. 2016;578:373-428. doi: 10.1016/bs.mie.2016.05.042. Epub 2016 Jul 11. Review.


Gold nanoparticle conjugated Rad6 inhibitor induces cell death in triple negative breast cancer cells by inducing mitochondrial dysfunction and PARP-1 hyperactivation: Synthesis and characterization.

Haynes B, Zhang Y, Liu F, Li J, Petit S, Kothayer H, Bao X, Westwell AD, Mao G, Shekhar MPV.

Nanomedicine. 2016 Apr;12(3):745-757. doi: 10.1016/j.nano.2015.10.010. Epub 2015 Nov 10. Erratum in: Nanomedicine. 2019 Jun;18:426.


Gene expression profiling in gill tissues of White spot syndrome virus infected black tiger shrimp Penaeus monodon by DNA microarray.

Shekhar MS, Gomathi A, Gopikrishna G, Ponniah AG.

Virusdisease. 2015 Jun;26(1-2):9-18. doi: 10.1007/s13337-014-0243-7. Epub 2015 Feb 10.


Assessment of the relationship between maxillary rotation and nasal morphology in males.

Bhushan R, Kumar S, Chauhan AK, Mohan S, Shekhar M, Narnoly A.

Contemp Clin Dent. 2015 Mar;6(Suppl 1):S12-7. doi: 10.4103/0976-237X.152931.


Crosstalk between translesion synthesis, Fanconi anemia network, and homologous recombination repair pathways in interstrand DNA crosslink repair and development of chemoresistance.

Haynes B, Saadat N, Myung B, Shekhar MP.

Mutat Res Rev Mutat Res. 2015 Jan-Mar;763:258-66. doi: 10.1016/j.mrrev.2014.11.005. Epub 2014 Nov 20. Review.


Tumor heterogeneity is fundamental to the tumor ecosystem.

Heppner GH, Shekhar M.

Oncology (Williston Park). 2014 Sep;28(9):780-1. No abstract available.


QTL for white spot syndrome virus resistance and the sex-determining locus in the Indian black tiger shrimp (Penaeus monodon).

Robinson NA, Gopikrishna G, Baranski M, Katneni VK, Shekhar MS, Shanmugakarthik J, Jothivel S, Gopal C, Ravichandran P, Gitterle T, Ponniah AG.

BMC Genomics. 2014 Aug 28;15:731. doi: 10.1186/1471-2164-15-731.


High salinity induced expression profiling of differentially expressed genes in shrimp (Penaeus monodon).

Shekhar MS, Kiruthika J, Rajesh S, Ponniah AG.

Mol Biol Rep. 2014 Sep;41(9):6275-89. doi: 10.1007/s11033-014-3510-1. Epub 2014 Jun 29.


Geographic tongue in monozygotic twins.

Shekhar M G.

J Clin Diagn Res. 2014 Apr;8(4):ZD01-2. doi: 10.7860/JCDR/2014/7512.4210. Epub 2014 Apr 15.


Recent insights into host-pathogen interaction in white spot syndrome virus infected penaeid shrimp.

Shekhar MS, Ponniah AG.

J Fish Dis. 2015 Jul;38(7):599-612. doi: 10.1111/jfd.12279. Epub 2014 Jun 23. Review.


Primary otomycosis in the Indian subcontinent: predisposing factors, microbiology, and classification.

Prasad SC, Kotigadde S, Shekhar M, Thada ND, Prabhu P, D' Souza T, Prasad KC.

Int J Microbiol. 2014;2014:636493. doi: 10.1155/2014/636493. Epub 2014 May 18.


Melanoma Development and Progression Are Associated with Rad6 Upregulation and β -Catenin Relocation to the Cell Membrane.

Rosner K, Mehregan DR, Kirou E, Abrams J, Kim S, Campbell M, Frieder J, Lawrence K, Haynes B, Shekhar MP.

J Skin Cancer. 2014;2014:439205. doi: 10.1155/2014/439205. Epub 2014 May 6.


Rad6 is a Potential Early Marker of Melanoma Development.

Rosner K, Adsule S, Haynes B, Kirou E, Kato I, Mehregan DR, Shekhar MP.

Transl Oncol. 2014 May 12. pii: S1936-5233(14)00044-8. doi: 10.1016/j.tranon.2014.04.009. [Epub ahead of print]


Functional analysis of MKP-1 and MKP-2 in breast cancer tamoxifen sensitivity.

Haagenson KK, Zhang JW, Xu Z, Shekhar MP, Wu GS.

Oncotarget. 2014 Feb 28;5(4):1101-10. Erratum in: Oncotarget. 2018 Oct 16;9(81):35286.


The development of a high density linkage map for black tiger shrimp (Penaeus monodon) based on cSNPs.

Baranski M, Gopikrishna G, Robinson NA, Katneni VK, Shekhar MS, Shanmugakarthik J, Jothivel S, Gopal C, Ravichandran P, Kent M, Arnyasi M, Ponniah AG.

PLoS One. 2014 Jan 17;9(1):e85413. doi: 10.1371/journal.pone.0085413. eCollection 2014.

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