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Items: 1 to 50 of 58

1.

The joint effect of aging and HIV infection on microstructure of white matter bundles.

Kuhn T, Jin Y, Huang C, Kim Y, Nir TM, Gullett JM, Jones JD, Sayegh P, Chung C, Dang BH, Singer EJ, Shattuck DW, Jahanshad N, Bookheimer SY, Hinkin CH, Zhu H, Thompson PM, Thames AD.

Hum Brain Mapp. 2019 Oct 15;40(15):4370-4380. doi: 10.1002/hbm.24708. Epub 2019 Jul 4.

PMID:
31271489
2.

Using the Anisotropic Laplace Equation to Compute Cortical Thickness.

Joshi AA, Bhushan C, Salloum R, Wisnowski J, Shattuck DW, Leahy RM.

Med Image Comput Comput Assist Interv. 2018 Sep;11072:549-556. doi: 10.1007/978-3-030-00931-1_63. Epub 2018 Sep 13.

3.

Multiuser virtual reality environment for visualising neuroimaging data.

Shattuck DW.

Healthc Technol Lett. 2018 Oct 19;5(5):183-188. doi: 10.1049/htl.2018.5077. eCollection 2018 Oct.

4.

VOTING-BASED SEGMENTATION OF OVERLAPPING NUCLEI IN CLARITY IMAGES.

Quachtran B, de la Torre Ubieta L, Yusupova M, Geschwind DH, Shattuck DW.

Proc IEEE Int Symp Biomed Imaging. 2018 Apr;2018:658-662. doi: 10.1109/ISBI.2018.8363660. Epub 2018 May 24.

5.

Superficial white matter damage in anti-NMDA receptor encephalitis.

Phillips OR, Joshi SH, Narr KL, Shattuck DW, Singh M, Di Paola M, Ploner CJ, Prüss H, Paul F, Finke C.

J Neurol Neurosurg Psychiatry. 2018 May;89(5):518-525. doi: 10.1136/jnnp-2017-316822. Epub 2017 Nov 3.

6.

Individual parcellation of resting fMRI with a group functional connectivity prior.

Chong M, Bhushan C, Joshi AA, Choi S, Haldar JP, Shattuck DW, Spreng RN, Leahy RM.

Neuroimage. 2017 Aug 1;156:87-100. doi: 10.1016/j.neuroimage.2017.04.054. Epub 2017 May 3.

7.

How age of acquisition influences brain architecture in bilinguals.

Wei M, Joshi AA, Zhang M, Mei L, Manis FR, He Q, Beattie RL, Xue G, Shattuck DW, Leahy RM, Xue F, Houston SM, Chen C, Dong Q, Lu ZL.

J Neurolinguistics. 2015 Nov;36:35-55. Epub 2015 May 22.

8.

Automated MRI Volumetric Analysis in Patients with Rasmussen Syndrome.

Wang ZI, Krishnan B, Shattuck DW, Leahy RM, Moosa AN, Wyllie E, Burgess RC, Al-Sharif NB, Joshi AA, Alexopoulos AV, Mosher JC, Udayasankar U; Pediatric Imaging, Neurocognition and Genetics Study, Jones SE.

AJNR Am J Neuroradiol. 2016 Dec;37(12):2348-2355. Epub 2016 Sep 8.

9.

Major Superficial White Matter Abnormalities in Huntington's Disease.

Phillips OR, Joshi SH, Squitieri F, Sanchez-Castaneda C, Narr K, Shattuck DW, Caltagirone C, Sabatini U, Di Paola M.

Front Neurosci. 2016 May 23;10:197. doi: 10.3389/fnins.2016.00197. eCollection 2016.

10.

The superficial white matter in Alzheimer's disease.

Phillips OR, Joshi SH, Piras F, Orfei MD, Iorio M, Narr KL, Shattuck DW, Caltagirone C, Spalletta G, Di Paola M.

Hum Brain Mapp. 2016 Apr;37(4):1321-34. doi: 10.1002/hbm.23105. Epub 2016 Jan 23.

11.

CORRECTING INHOMOGENEITY-INDUCED DISTORTION IN FMRI USING NON-RIGID REGISTRATION.

Chambers MC, Bhushan C, Haldar JP, Leahy RM, Shattuck DW.

Proc IEEE Int Symp Biomed Imaging. 2015 Apr;2015:1364-1367.

12.

Amygdala responses to salient social cues vary with oxytocin receptor genotype in youth.

Marusak HA, Furman DJ, Kuruvadi N, Shattuck DW, Joshi SH, Joshi AA, Etkin A, Thomason ME.

Neuropsychologia. 2015 Dec;79(Pt A):1-9. doi: 10.1016/j.neuropsychologia.2015.10.015. Epub 2015 Oct 23.

13.

Interactive effects of BDNF Val66Met genotype and trauma on limbic brain anatomy in childhood.

Marusak HA, Kuruvadi N, Vila AM, Shattuck DW, Joshi SH, Joshi AA, Jella PK, Thomason ME.

Eur Child Adolesc Psychiatry. 2016 May;25(5):509-18. doi: 10.1007/s00787-015-0759-4. Epub 2015 Aug 19.

14.

Co-registration and distortion correction of diffusion and anatomical images based on inverse contrast normalization.

Bhushan C, Haldar JP, Choi S, Joshi AA, Shattuck DW, Leahy RM.

Neuroimage. 2015 Jul 15;115:269-80. doi: 10.1016/j.neuroimage.2015.03.050. Epub 2015 Mar 27.

15.

An equal start: absence of group differences in cognitive, social, and neural measures prior to music or sports training in children.

Habibi A, Ilari B, Crimi K, Metke M, Kaplan JT, Joshi AA, Leahy RM, Shattuck DW, Choi SY, Haldar JP, Ficek B, Damasio A, Damasio H.

Front Hum Neurosci. 2014 Sep 9;8:690. doi: 10.3389/fnhum.2014.00690. eCollection 2014.

16.

Increased Cortical Thickness in Male-to-Female Transsexualism.

Luders E, Sánchez FJ, Tosun D, Shattuck DW, Gaser C, Vilain E, Toga AW.

J Behav Brain Sci. 2012 Aug;2(3):357-362.

17.

An invariant shape representation using the anisotropic Helmholtz equation.

Joshi AA, Ashrafulla S, Shattuck DW, Damasio H, Leahy RM.

Med Image Comput Comput Assist Interv. 2012;15(Pt 3):607-14.

18.

A Method for Automated Cortical Surface Registration and Labeling.

Joshi AA, Shattuck DW, Leahy RM.

Biomed Image Regist Proc. 2012 Jul;7359:180-189.

19.

Mapping the human connectome.

Toga AW, Clark KA, Thompson PM, Shattuck DW, Van Horn JD.

Neurosurgery. 2012 Jul;71(1):1-5. doi: 10.1227/NEU.0b013e318258e9ff.

20.

GEODESIC CURVATURE FLOW ON SURFACES FOR AUTOMATIC SULCAL DELINEATION.

Joshi AA, Shattuck DW, Damasio H, Leahy RM.

Proc IEEE Int Symp Biomed Imaging. 2012 May;2012:430-433.

21.

Robust Identification of Partial-Correlation Based Networks with Applications to Cortical Thickness Data.

Wheland D, Joshi AA, McMahon KL, Hansell NK, Martin NG, Wright MJ, Thompson PM, Shattuck DW, Leahy RM.

Proc IEEE Int Symp Biomed Imaging. 2012 May;2012:1551-1554.

22.

The Center for Computational Biology: resources, achievements, and challenges.

Toga AW, Dinov ID, Thompson PM, Woods RP, Van Horn JD, Shattuck DW, Parker DS.

J Am Med Inform Assoc. 2012 Mar-Apr;19(2):202-6. doi: 10.1136/amiajnl-2011-000525. Epub 2011 Nov 10.

23.

SKULL-STRIPPING WITH DEFORMABLE ORGANISMS.

Prasad G, Joshi AA, Thompson PM, Toga AW, Shattuck DW, Terzopoulos D.

Proc IEEE Int Symp Biomed Imaging. 2011:1662-1665.

24.

DigiWarp: a method for deformable mouse atlas warping to surface topographic data.

Joshi AA, Chaudhari AJ, Li C, Dutta J, Cherry SR, Shattuck DW, Toga AW, Leahy RM.

Phys Med Biol. 2010 Oct 21;55(20):6197-214. doi: 10.1088/0031-9155/55/20/011. Epub 2010 Sep 30.

25.

Visualization of image data from cells to organisms.

Walter T, Shattuck DW, Baldock R, Bastin ME, Carpenter AE, Duce S, Ellenberg J, Fraser A, Hamilton N, Pieper S, Ragan MA, Schneider JE, Tomancak P, Hériché JK.

Nat Methods. 2010 Mar;7(3 Suppl):S26-41. doi: 10.1038/nmeth.1431. Review.

26.

Visualizing biological data-now and in the future.

O'Donoghue SI, Gavin AC, Gehlenborg N, Goodsell DS, Hériché JK, Nielsen CB, North C, Olson AJ, Procter JB, Shattuck DW, Walter T, Wong B.

Nat Methods. 2010 Mar;7(3 Suppl):S2-4. doi: 10.1038/nmeth.f.301.

PMID:
20195254
27.

Brain MRI tissue classification based on local Markov random fields.

Tohka J, Dinov ID, Shattuck DW, Toga AW.

Magn Reson Imaging. 2010 May;28(4):557-73. doi: 10.1016/j.mri.2009.12.012. Epub 2010 Jan 27.

28.

Sulcal set optimization for cortical surface registration.

Joshi AA, Pantazis D, Li Q, Damasio H, Shattuck DW, Toga AW, Leahy RM.

Neuroimage. 2010 Apr 15;50(3):950-9. doi: 10.1016/j.neuroimage.2009.12.064. Epub 2010 Jan 4.

29.

Meeting the Challenges of Neuroimaging Genetics.

de Zubicaray GI, Chiang MC, McMahon KL, Shattuck DW, Toga AW, Martin NG, Wright MJ, Thompson PM.

Brain Imaging Behav. 2008 Dec 1;2(4):258-263.

30.

Comparison of landmark-based and automatic methods for cortical surface registration.

Pantazis D, Joshi A, Jiang J, Shattuck DW, Bernstein LE, Damasio H, Leahy RM.

Neuroimage. 2010 Feb 1;49(3):2479-93. doi: 10.1016/j.neuroimage.2009.09.027. Epub 2009 Sep 28.

31.

POSTURE MATCHING AND ELASTIC REGISTRATION OF A MOUSE ATLAS TO SURFACE TOPOGRAPHY RANGE DATA.

Joshi AA, Chaudhari AJ, Li C, Shattuck DW, Dutta J, Leahy RM, Toga AW.

Proc IEEE Int Symp Biomed Imaging. 2009 Aug 7;2009:366-369.

32.

Active fibers: matching deformable tract templates to diffusion tensor images.

Eckstein I, Shattuck DW, Stein JL, McMahon KL, de Zubicaray G, Wright MJ, Thompson PM, Toga AW.

Neuroimage. 2009 Aug;47 Suppl 2:T82-9. doi: 10.1016/j.neuroimage.2009.01.065. Epub 2009 Feb 11.

33.

A parameterization-based numerical method for isotropic and anisotropic diffusion smoothing on non-flat surfaces.

Joshi AA, Shattuck DW, Thompson PM, Leahy RM.

IEEE Trans Image Process. 2009 Jun;18(6):1358-65. doi: 10.1109/TIP.2009.2016163. Epub 2009 May 5.

34.

A diffusion tensor imaging tractography algorithm based on Navier-Stokes fluid mechanics.

Hageman NS, Toga AW, Narr KL, Shattuck DW.

IEEE Trans Med Imaging. 2009 Mar;28(3):348-60. doi: 10.1109/TMI.2008.2004403.

35.

Genetics of brain fiber architecture and intellectual performance.

Chiang MC, Barysheva M, Shattuck DW, Lee AD, Madsen SK, Avedissian C, Klunder AD, Toga AW, McMahon KL, de Zubicaray GI, Wright MJ, Srivastava A, Balov N, Thompson PM.

J Neurosci. 2009 Feb 18;29(7):2212-24. doi: 10.1523/JNEUROSCI.4184-08.2009.

36.

Semi-automated method for delineation of landmarks on models of the cerebral cortex.

Shattuck DW, Joshi AA, Pantazis D, Kan E, Dutton RA, Sowell ER, Thompson PM, Toga AW, Leahy RM.

J Neurosci Methods. 2009 Apr 15;178(2):385-92. doi: 10.1016/j.jneumeth.2008.12.025. Epub 2008 Dec 31.

37.

Mean diffusivity: a biomarker for CSF-related disease and genetic liability effects in schizophrenia.

Narr KL, Hageman N, Woods RP, Hamilton LS, Clark K, Phillips O, Shattuck DW, Asarnow RF, Toga AW, Nuechterlein KH.

Psychiatry Res. 2009 Jan 30;171(1):20-32. doi: 10.1016/j.pscychresns.2008.03.008. Epub 2008 Dec 10.

38.

Online resource for validation of brain segmentation methods.

Shattuck DW, Prasad G, Mirza M, Narr KL, Toga AW.

Neuroimage. 2009 Apr 1;45(2):431-9. doi: 10.1016/j.neuroimage.2008.10.066. Epub 2008 Nov 25.

39.

Visualization tools for high angular resolution diffusion imaging.

Shattuck DW, Chiang MC, Barysheva M, McMahon KL, de Zubicaray GI, Meredith M, Wright MJ, Toga AW, Thompson PM.

Med Image Comput Comput Assist Interv. 2008;11(Pt 2):298-305.

40.

Surface-constrained volumetric brain registration using harmonic mappings.

Joshi AA, Shattuck DW, Thompson PM, Leahy RM.

IEEE Trans Med Imaging. 2007 Dec;26(12):1657-69.

41.

Construction of a 3D probabilistic atlas of human cortical structures.

Shattuck DW, Mirza M, Adisetiyo V, Hojatkashani C, Salamon G, Narr KL, Poldrack RA, Bilder RM, Toga AW.

Neuroimage. 2008 Feb 1;39(3):1064-80. Epub 2007 Nov 26.

42.

Registration of cortical surfaces using sulcal landmarks for group analysis of MEG data.

Joshi AA, Shattuck DW, Thompson PM, Leahy RM.

Int Congr Ser. 2007 Jun 1;1300:229-232.

43.

Genetic algorithms for finite mixture model based voxel classification in neuroimaging.

Tohka J, Krestyannikov E, Dinov ID, Graham AM, Shattuck DW, Ruotsalainen U, Toga AW.

IEEE Trans Med Imaging. 2007 May;26(5):696-711.

44.

Testosterone treatment in multiple sclerosis: a pilot study.

Sicotte NL, Giesser BS, Tandon V, Klutch R, Steiner B, Drain AE, Shattuck DW, Hull L, Wang HJ, Elashoff RM, Swerdloff RS, Voskuhl RR.

Arch Neurol. 2007 May;64(5):683-8.

PMID:
17502467
45.
46.

Diffusion tensor MRI shows abnormal brainstem crossing fibers associated with ROBO3 mutations.

Sicotte NL, Salamon G, Shattuck DW, Hageman N, Rüb U, Salamon N, Drain AE, Demer JL, Engle EC, Alger JR, Baloh RW, Deller T, Jen JC.

Neurology. 2006 Aug 8;67(3):519-21.

PMID:
16894121
47.

Cerebellar cortical atrophy in experimental autoimmune encephalomyelitis.

MacKenzie-Graham A, Tinsley MR, Shah KP, Aguilar C, Strickland LV, Boline J, Martin M, Morales L, Shattuck DW, Jacobs RE, Voskuhl RR, Toga AW.

Neuroimage. 2006 Sep;32(3):1016-23. Epub 2006 Jun 27.

PMID:
16806982
48.

Quantitative evaluation of automated skull-stripping methods applied to contemporary and legacy images: effects of diagnosis, bias correction, and slice location.

Fennema-Notestine C, Ozyurt IB, Clark CP, Morris S, Bischoff-Grethe A, Bondi MW, Jernigan TL, Fischl B, Segonne F, Shattuck DW, Leahy RM, Rex DE, Toga AW, Zou KH, Brown GG.

Hum Brain Mapp. 2006 Feb;27(2):99-113.

49.

Segmentation of skull and scalp in 3-D human MRI using mathematical morphology.

Dogdas B, Shattuck DW, Leahy RM.

Hum Brain Mapp. 2005 Dec;26(4):273-85.

PMID:
15966000
50.

A meta-algorithm for brain extraction in MRI.

Rex DE, Shattuck DW, Woods RP, Narr KL, Luders E, Rehm K, Stoltzner SE, Rottenberg DA, Toga AW.

Neuroimage. 2004 Oct;23(2):625-37. Erratum in: Neuroimage. 2008 Jan 15;39(2):913. Stolzner, Sarah E [corrected to Stoltzner, Sarah E].

PMID:
15488412

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