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Items: 1 to 50 of 66

1.

eIF4G2 balances its own mRNA translation via a PCBP2-based feedback loop.

Smirnova VV, Shestakova ED, Bikmetov DV, Chugunova AA, Osterman IA, Serebryakova MV, Sergeeva OV, Zatsepin TS, Shatsky IN, Terenin IM.

RNA. 2019 Jul;25(7):757-767. doi: 10.1261/rna.065623.118. Epub 2019 Apr 22.

PMID:
31010886
2.

Cellular Gene Expression during Hepatitis C Virus Replication as Revealed by Ribosome Profiling.

Gerresheim GK, Bathke J, Michel AM, Andreev DE, Shalamova LA, Rossbach O, Hu P, Glebe D, Fricke M, Marz M, Goesmann A, Kiniry SJ, Baranov PV, Shatsky IN, Niepmann M.

Int J Mol Sci. 2019 Mar 15;20(6). pii: E1321. doi: 10.3390/ijms20061321.

3.

Translatome and transcriptome analysis of TMA20 (MCT-1) and TMA64 (eIF2D) knockout yeast strains.

Makeeva DS, Lando AS, Anisimova A, Egorov AA, Logacheva MD, Penin AA, Andreev DE, Sinitcyn PG, Terenin IM, Shatsky IN, Kulakovskiy IV, Dmitriev SE.

Data Brief. 2019 Feb 2;23:103701. doi: 10.1016/j.dib.2019.103701. eCollection 2019 Apr.

4.

A novel uORF-based regulatory mechanism controls translation of the human MDM2 and eIF2D mRNAs during stress.

Akulich KA, Sinitcyn PG, Makeeva DS, Andreev DE, Terenin IM, Anisimova AS, Shatsky IN, Dmitriev SE.

Biochimie. 2019 Feb;157:92-101. doi: 10.1016/j.biochi.2018.11.005. Epub 2018 Nov 9.

PMID:
30419262
5.

Tma64/eIF2D, Tma20/MCT-1, and Tma22/DENR Recycle Post-termination 40S Subunits In Vivo.

Young DJ, Makeeva DS, Zhang F, Anisimova AS, Stolboushkina EA, Ghobakhlou F, Shatsky IN, Dmitriev SE, Hinnebusch AG, Guydosh NR.

Mol Cell. 2018 Sep 6;71(5):761-774.e5. doi: 10.1016/j.molcel.2018.07.028. Epub 2018 Aug 23.

6.

Cap-Independent Translation: What's in a Name?

Shatsky IN, Terenin IM, Smirnova VV, Andreev DE.

Trends Biochem Sci. 2018 Nov;43(11):882-895. doi: 10.1016/j.tibs.2018.04.011. Epub 2018 May 19. Review.

PMID:
29789219
7.

Eukaryotic translation elongation factor 2 (eEF2) catalyzes reverse translocation of the eukaryotic ribosome.

Susorov D, Zakharov N, Shuvalova E, Ivanov A, Egorova T, Shuvalov A, Shatsky IN, Alkalaeva E.

J Biol Chem. 2018 Apr 6;293(14):5220-5229. doi: 10.1074/jbc.RA117.000761. Epub 2018 Feb 16.

8.

Translation control of mRNAs encoding mammalian translation initiation factors.

Andreev DE, Dmitriev SE, Loughran G, Terenin IM, Baranov PV, Shatsky IN.

Gene. 2018 Apr 20;651:174-182. doi: 10.1016/j.gene.2018.02.013. Epub 2018 Feb 4. Review.

PMID:
29414693
9.

Insights into the mechanisms of eukaryotic translation gained with ribosome profiling.

Andreev DE, O'Connor PB, Loughran G, Dmitriev SE, Baranov PV, Shatsky IN.

Nucleic Acids Res. 2017 Jan 25;45(2):513-526. doi: 10.1093/nar/gkw1190. Epub 2016 Dec 6. Review.

10.

Four translation initiation pathways employed by the leaderless mRNA in eukaryotes.

Akulich KA, Andreev DE, Terenin IM, Smirnova VV, Anisimova AS, Makeeva DS, Arkhipova VI, Stolboushkina EA, Garber MB, Prokofjeva MM, Spirin PV, Prassolov VS, Shatsky IN, Dmitriev SE.

Sci Rep. 2016 Nov 28;6:37905. doi: 10.1038/srep37905.

11.

A researcher's guide to the galaxy of IRESs.

Terenin IM, Smirnova VV, Andreev DE, Dmitriev SE, Shatsky IN.

Cell Mol Life Sci. 2017 Apr;74(8):1431-1455. doi: 10.1007/s00018-016-2409-5. Epub 2016 Nov 16. Review.

PMID:
27853833
12.

[Determination of the Minimal Fragment of the Poliovirus IRES Necessary for the Formation of a Specific Complex with the Human Glycyl-tRNA Synthetase].

Nikonova EY, Mihaylina AO, Lekontseva NV, Nikonov OS, Klyashtorny VG, Kravchenko OV, Andreev DE, Shatsky IN, Garber MB.

Biofizika. 2016 Mar-Apr;61(2):277-85. Russian.

PMID:
27192829
13.

Sliding of a 43S ribosomal complex from the recognized AUG codon triggered by a delay in eIF2-bound GTP hydrolysis.

Terenin IM, Akulich KA, Andreev DE, Polyanskaya SA, Shatsky IN, Dmitriev SE.

Nucleic Acids Res. 2016 Feb 29;44(4):1882-93. doi: 10.1093/nar/gkv1514. Epub 2015 Dec 29.

14.

Does HIV-1 mRNA 5'-untranslated region bear an internal ribosome entry site?

Smirnova VV, Terenin IM, Khutornenko AA, Andreev DE, Dmitriev SE, Shatsky IN.

Biochimie. 2016 Feb;121:228-37. doi: 10.1016/j.biochi.2015.12.004. Epub 2015 Dec 14.

PMID:
26700150
15.

Pros and cons of pDNA and mRNA transfection to study mRNA translation in mammalian cells.

Andreev DE, Terenin IM, Dmitriev SE, Shatsky IN.

Gene. 2016 Mar 1;578(1):1-6. doi: 10.1016/j.gene.2015.12.008. Epub 2015 Dec 8. Review.

PMID:
26680098
16.

Oxygen and glucose deprivation induces widespread alterations in mRNA translation within 20 minutes.

Andreev DE, O'Connor PB, Zhdanov AV, Dmitriev RI, Shatsky IN, Papkovsky DB, Baranov PV.

Genome Biol. 2015 May 6;16:90. doi: 10.1186/s13059-015-0651-z.

17.

Translation of 5' leaders is pervasive in genes resistant to eIF2 repression.

Andreev DE, O'Connor PB, Fahey C, Kenny EM, Terenin IM, Dmitriev SE, Cormican P, Morris DW, Shatsky IN, Baranov PV.

Elife. 2015 Jan 26;4:e03971. doi: 10.7554/eLife.03971.

18.

Transcriptome-wide studies uncover the diversity of modes of mRNA recruitment to eukaryotic ribosomes.

Shatsky IN, Dmitriev SE, Andreev DE, Terenin IM.

Crit Rev Biochem Mol Biol. 2014 Mar-Apr;49(2):164-77. doi: 10.3109/10409238.2014.887051. Epub 2014 Feb 13. Review.

PMID:
24520918
19.

HCV IRES interacts with the 18S rRNA to activate the 40S ribosome for subsequent steps of translation initiation.

Malygin AA, Kossinova OA, Shatsky IN, Karpova GG.

Nucleic Acids Res. 2013 Oct;41(18):8706-14. doi: 10.1093/nar/gkt632. Epub 2013 Jul 19.

20.

Cap-independent translation initiation of apaf-1 mRNA based on a scanning mechanism is determined by some features of the secondary structure of its 5' untranslated region.

Andreev DE, Dmitriev SE, Terenin IM, Shatsky IN.

Biochemistry (Mosc). 2013 Feb;78(2):157-65. doi: 10.1134/S0006297913020041.

21.

Proteins of the human 40S ribosomal subunit involved in hepatitis C IRES binding as revealed from fluorescent labeling.

Malygin AA, Shatsky IN, Karpova GG.

Biochemistry (Mosc). 2013 Jan;78(1):53-9. doi: 10.1134/S0006297913010069.

22.

A novel mechanism of eukaryotic translation initiation that is neither m7G-cap-, nor IRES-dependent.

Terenin IM, Andreev DE, Dmitriev SE, Shatsky IN.

Nucleic Acids Res. 2013 Feb 1;41(3):1807-16. doi: 10.1093/nar/gks1282. Epub 2012 Dec 24.

23.

The 5' untranslated region of Apaf-1 mRNA directs translation under apoptosis conditions via a 5' end-dependent scanning mechanism.

Andreev DE, Dmitriev SE, Zinovkin R, Terenin IM, Shatsky IN.

FEBS Lett. 2012 Nov 30;586(23):4139-43. doi: 10.1016/j.febslet.2012.10.010. Epub 2012 Oct 17.

24.

Glycyl-tRNA synthetase specifically binds to the poliovirus IRES to activate translation initiation.

Andreev DE, Hirnet J, Terenin IM, Dmitriev SE, Niepmann M, Shatsky IN.

Nucleic Acids Res. 2012 Jul;40(12):5602-14. doi: 10.1093/nar/gks182. Epub 2012 Feb 28.

25.

Archaeal translation initiation factor aIF2 can substitute for eukaryotic eIF2 in ribosomal scanning during mammalian 48S complex formation.

Dmitriev SE, Stolboushkina EA, Terenin IM, Andreev DE, Garber MB, Shatsky IN.

J Mol Biol. 2011 Oct 14;413(1):106-14. doi: 10.1016/j.jmb.2011.08.026. Epub 2011 Aug 23.

PMID:
21884705
26.

Unidirectional constant rate motion of the ribosomal scanning particle during eukaryotic translation initiation.

Vassilenko KS, Alekhina OM, Dmitriev SE, Shatsky IN, Spirin AS.

Nucleic Acids Res. 2011 Jul;39(13):5555-67. doi: 10.1093/nar/gkr147. Epub 2011 Mar 16.

27.

Cap- and IRES-independent scanning mechanism of translation initiation as an alternative to the concept of cellular IRESs.

Shatsky IN, Dmitriev SE, Terenin IM, Andreev DE.

Mol Cells. 2010 Oct;30(4):285-93. doi: 10.1007/s10059-010-0149-1. Epub 2010 Oct 14. Review.

28.

GTP-independent tRNA delivery to the ribosomal P-site by a novel eukaryotic translation factor.

Dmitriev SE, Terenin IM, Andreev DE, Ivanov PA, Dunaevsky JE, Merrick WC, Shatsky IN.

J Biol Chem. 2010 Aug 27;285(35):26779-87. doi: 10.1074/jbc.M110.119693. Epub 2010 Jun 21.

29.

Influence of the hepatitis C virus 3'-untranslated region on IRES-dependent and cap-dependent translation initiation.

Bung C, Bochkaeva Z, Terenin I, Zinovkin R, Shatsky IN, Niepmann M.

FEBS Lett. 2010 Feb 19;584(4):837-42. doi: 10.1016/j.febslet.2010.01.015. Epub 2010 Jan 16.

30.

Differential contribution of the m7G-cap to the 5' end-dependent translation initiation of mammalian mRNAs.

Andreev DE, Dmitriev SE, Terenin IM, Prassolov VS, Merrick WC, Shatsky IN.

Nucleic Acids Res. 2009 Oct;37(18):6135-47. doi: 10.1093/nar/gkp665. Epub 2009 Aug 20.

31.

Eukaryotic translation initiation machinery can operate in a bacterial-like mode without eIF2.

Terenin IM, Dmitriev SE, Andreev DE, Shatsky IN.

Nat Struct Mol Biol. 2008 Aug;15(8):836-41. doi: 10.1038/nsmb.1445. Epub 2008 Jul 6.

PMID:
18604219
32.

Differential factor requirement to assemble translation initiation complexes at the alternative start codons of foot-and-mouth disease virus RNA.

Andreev DE, Fernandez-Miragall O, Ramajo J, Dmitriev SE, Terenin IM, Martinez-Salas E, Shatsky IN.

RNA. 2007 Aug;13(8):1366-74. Epub 2007 Jun 25.

33.
34.

A leaderless mRNA can bind to mammalian 80S ribosomes and direct polypeptide synthesis in the absence of translation initiation factors.

Andreev DE, Terenin IM, Dunaevsky YE, Dmitriev SE, Shatsky IN.

Mol Cell Biol. 2006 Apr;26(8):3164-9.

35.

A cross-kingdom internal ribosome entry site reveals a simplified mode of internal ribosome entry.

Terenin IM, Dmitriev SE, Andreev DE, Royall E, Belsham GJ, Roberts LO, Shatsky IN.

Mol Cell Biol. 2005 Sep;25(17):7879-88.

36.
37.
38.

PSF acts through the human immunodeficiency virus type 1 mRNA instability elements to regulate virus expression.

Zolotukhin AS, Michalowski D, Bear J, Smulevitch SV, Traish AM, Peng R, Patton J, Shatsky IN, Felber BK.

Mol Cell Biol. 2003 Sep;23(18):6618-30.

39.

Distinctive properties of the 5'-untranslated region of human hsp70 mRNA.

Rubtsova MP, Sizova DV, Dmitriev SE, Ivanov DS, Prassolov VS, Shatsky IN.

J Biol Chem. 2003 Jun 20;278(25):22350-6. Epub 2003 Apr 7.

40.

Conversion of 48S translation preinitiation complexes into 80S initiation complexes as revealed by toeprinting.

Dmitriev SE, Pisarev AV, Rubtsova MP, Dunaevsky YE, Shatsky IN.

FEBS Lett. 2003 Jan 2;533(1-3):99-104.

41.

Positive and negative effects of the major mammalian messenger ribonucleoprotein p50 on binding of 40 S ribosomal subunits to the initiation codon of beta-globin mRNA.

Pisarev AV, Skabkin MA, Thomas AA, Merrick WC, Ovchinnikov LP, Shatsky IN.

J Biol Chem. 2002 May 3;277(18):15445-51. Epub 2002 Feb 19.

42.

Molecular mechanisms of translation initiation in eukaryotes.

Pestova TV, Kolupaeva VG, Lomakin IB, Pilipenko EV, Shatsky IN, Agol VI, Hellen CU.

Proc Natl Acad Sci U S A. 2001 Jun 19;98(13):7029-36. Review.

43.

Lipoxygenase mRNA silencing in erythroid differentiation: The 3'UTR regulatory complex controls 60S ribosomal subunit joining.

Ostareck DH, Ostareck-Lederer A, Shatsky IN, Hentze MW.

Cell. 2001 Jan 26;104(2):281-90.

44.
45.
49.
50.

The RNA-binding properties of protein synthesis initiation factor eIF-2.

Flynn A, Shatsky IN, Proud CG, Kaminski A.

Biochim Biophys Acta. 1994 Oct 18;1219(2):293-301.

PMID:
7918624

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