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Items: 1 to 50 of 90

1.

Water loading driven size, shape, and composition of cetyltrimethylammonium/hexanol/pentane reverse micelles.

Fuglestad B, Gupta K, Wand AJ, Sharp KA.

J Colloid Interface Sci. 2019 Jan 6;540:207-217. doi: 10.1016/j.jcis.2019.01.016. [Epub ahead of print]

PMID:
30640068
2.

Companion Simulations and Modeling to NMR-Based Dynamical Studies of Proteins.

Sharp KA.

Methods Enzymol. 2019;615:1-41. doi: 10.1016/bs.mie.2018.08.038. Epub 2018 Oct 8.

PMID:
30638527
3.

Measuring Entropy in Molecular Recognition by Proteins.

Wand AJ, Sharp KA.

Annu Rev Biophys. 2018 May 20;47:41-61. doi: 10.1146/annurev-biophys-060414-034042. Epub 2018 Jan 18.

PMID:
29345988
4.

Entropy in molecular recognition by proteins.

Caro JA, Harpole KW, Kasinath V, Lim J, Granja J, Valentine KG, Sharp KA, Wand AJ.

Proc Natl Acad Sci U S A. 2017 Jun 20;114(25):6563-6568. doi: 10.1073/pnas.1621154114. Epub 2017 Jun 5.

5.

The Phenotypic Effects of Royal Jelly on Wild-Type D. melanogaster Are Strain-Specific.

Morgan SL, Seggio JA, Nascimento NF, Huh DD, Hicks JA, Sharp KA, Axelrod JD, Wang KC.

PLoS One. 2016 Aug 3;11(8):e0159456. doi: 10.1371/journal.pone.0159456. eCollection 2016.

6.

On the ability of molecular dynamics force fields to recapitulate NMR derived protein side chain order parameters.

O'Brien ES, Wand AJ, Sharp KA.

Protein Sci. 2016 Jun;25(6):1156-60. doi: 10.1002/pro.2922. Epub 2016 Apr 4.

7.

Prickle isoforms control the direction of tissue polarity by microtubule independent and dependent mechanisms.

Sharp KA, Axelrod JD.

Biol Open. 2016 Feb 10;5(3):229-36. doi: 10.1242/bio.016162.

8.

Unpacking the origins of in-cell crowding.

Sharp KA.

Proc Natl Acad Sci U S A. 2016 Feb 16;113(7):1684-5. doi: 10.1073/pnas.1600098113. Epub 2016 Feb 9. No abstract available.

9.

Characterization of Cetyltrimethylammonium Bromide/Hexanol Reverse Micelles by Experimentally Benchmarked Molecular Dynamics Simulations.

Fuglestad B, Gupta K, Wand AJ, Sharp KA.

Langmuir. 2016 Feb 23;32(7):1674-84. doi: 10.1021/acs.langmuir.5b03981. Epub 2016 Feb 12.

PMID:
26840651
10.

Regulation of brain glutamate metabolism by nitric oxide and S-nitrosylation.

Raju K, Doulias PT, Evans P, Krizman EN, Jackson JG, Horyn O, Daikhin Y, Nissim I, Yudkoff M, Nissim I, Sharp KA, Robinson MB, Ischiropoulos H.

Sci Signal. 2015 Jul 7;8(384):ra68. doi: 10.1126/scisignal.aaa4312.

11.

Analysis of the size dependence of macromolecular crowding shows that smaller is better.

Sharp KA.

Proc Natl Acad Sci U S A. 2015 Jun 30;112(26):7990-5. doi: 10.1073/pnas.1505396112. Epub 2015 Jun 15.

12.

On the relationship between NMR-derived amide order parameters and protein backbone entropy changes.

Sharp KA, O'Brien E, Kasinath V, Wand AJ.

Proteins. 2015 May;83(5):922-30. doi: 10.1002/prot.24789. Epub 2015 Mar 25.

13.

The remarkable hydration of the antifreeze protein Maxi: a computational study.

Sharp KA.

J Chem Phys. 2014 Dec 14;141(22):22D510. doi: 10.1063/1.4896693.

PMID:
25494781
14.

A sharp thermal transition of fast aromatic-ring dynamics in ubiquitin.

Kasinath V, Fu Y, Sharp KA, Wand AJ.

Angew Chem Int Ed Engl. 2015 Jan 2;54(1):102-7. doi: 10.1002/anie.201408220. Epub 2014 Dec 4.

15.

TCR triggering by pMHC ligands tethered on surfaces via poly(ethylene glycol) depends on polymer length.

Ma Z, LeBard DN, Loverde SM, Sharp KA, Klein ML, Discher DE, Finkel TH.

PLoS One. 2014 Nov 10;9(11):e112292. doi: 10.1371/journal.pone.0112292. eCollection 2014.

16.

Prickle/spiny-legs isoforms control the polarity of the apical microtubule network in planar cell polarity.

Olofsson J, Sharp KA, Matis M, Cho B, Axelrod JD.

Development. 2014 Jul;141(14):2866-74. doi: 10.1242/dev.105932.

17.

Banding of NMR-derived methyl order parameters: implications for protein dynamics.

Sharp KA, Kasinath V, Wand AJ.

Proteins. 2014 Sep;82(9):2106-17. doi: 10.1002/prot.24566. Epub 2014 Apr 18.

18.

Biochemistry. Protein folding, interrupted.

Sharp KA.

Science. 2014 Feb 14;343(6172):743-4. doi: 10.1126/science.1249405. No abstract available.

PMID:
24531963
19.

Microscopic insights into the NMR relaxation-based protein conformational entropy meter.

Kasinath V, Sharp KA, Wand AJ.

J Am Chem Soc. 2013 Oct 9;135(40):15092-100. doi: 10.1021/ja405200u. Epub 2013 Sep 25.

20.

A neuroprotective role for the DNA damage checkpoint in tauopathy.

Khurana V, Merlo P, DuBoff B, Fulga TA, Sharp KA, Campbell SD, Götz J, Feany MB.

Aging Cell. 2012 Apr;11(2):360-2. doi: 10.1111/j.1474-9726.2011.00778.x. Epub 2012 Feb 1.

21.

Identification of additional IDH mutations associated with oncometabolite R(-)-2-hydroxyglutarate production.

Ward PS, Cross JR, Lu C, Weigert O, Abel-Wahab O, Levine RL, Weinstock DM, Sharp KA, Thompson CB.

Oncogene. 2012 May 10;31(19):2491-8. doi: 10.1038/onc.2011.416. Epub 2011 Sep 26.

22.

Calculation of configurational entropy with a Boltzmann-quasiharmonic model: the origin of high-affinity protein-ligand binding.

Harpole KW, Sharp KA.

J Phys Chem B. 2011 Aug 4;115(30):9461-72. doi: 10.1021/jp111176x. Epub 2011 Jul 8.

PMID:
21678965
23.

Allostery in the lac operon: population selection or induced dissociation?

Sharp KA.

Biophys Chem. 2011 Nov;159(1):66-72. doi: 10.1016/j.bpc.2011.05.007. Epub 2011 May 12.

PMID:
21624765
24.

Improved method of preparation of supported planar lipid bilayers as artificial membranes for antigen presentation.

Ma Z, Janmey PA, Sharp KA, Finkel TH.

Microsc Res Tech. 2011 Dec;74(12):1174-85. doi: 10.1002/jemt.21012. Epub 2011 May 11.

PMID:
21563272
25.

A peek at ice binding by antifreeze proteins.

Sharp KA.

Proc Natl Acad Sci U S A. 2011 May 3;108(18):7281-2. doi: 10.1073/pnas.1104618108. Epub 2011 Apr 25. No abstract available.

26.

Intrinsic linear heterogeneity of amyloid β protein fibrils revealed by higher resolution mass-per-length determinations.

Komatsu H, Feingold-Link E, Sharp KA, Rastogi T, Axelsen PH.

J Biol Chem. 2010 Dec 31;285(53):41843-51. doi: 10.1074/jbc.M110.165068. Epub 2010 Oct 12.

27.

Lysosomal dysfunction promotes cleavage and neurotoxicity of tau in vivo.

Khurana V, Elson-Schwab I, Fulga TA, Sharp KA, Loewen CA, Mulkearns E, Tyynelä J, Scherzer CR, Feany MB.

PLoS Genet. 2010 Jul 15;6(7):e1001026. doi: 10.1371/journal.pgen.1001026.

28.

Differential scanning calorimetry and fluorescence study of lactoperoxidase as a function of guanidinium-HCl, urea, and pH.

Zelent B, Sharp KA, Vanderkooi JM.

Biochim Biophys Acta. 2010 Jul;1804(7):1508-15. doi: 10.1016/j.bbapap.2010.03.003. Epub 2010 Mar 16.

29.

Protein pockets: inventory, shape, and comparison.

Coleman RG, Sharp KA.

J Chem Inf Model. 2010 Apr 26;50(4):589-603. doi: 10.1021/ci900397t.

30.

The common feature of leukemia-associated IDH1 and IDH2 mutations is a neomorphic enzyme activity converting alpha-ketoglutarate to 2-hydroxyglutarate.

Ward PS, Patel J, Wise DR, Abdel-Wahab O, Bennett BD, Coller HA, Cross JR, Fantin VR, Hedvat CV, Perl AE, Rabinowitz JD, Carroll M, Su SM, Sharp KA, Levine RL, Thompson CB.

Cancer Cell. 2010 Mar 16;17(3):225-34. doi: 10.1016/j.ccr.2010.01.020. Epub 2010 Feb 18.

31.

Water in the half shell: structure of water, focusing on angular structure and solvation.

Sharp KA, Vanderkooi JM.

Acc Chem Res. 2010 Feb 16;43(2):231-9. doi: 10.1021/ar900154j.

32.

Shape and evolution of thermostable protein structure.

Coleman RG, Sharp KA.

Proteins. 2010 Feb 1;78(2):420-33. doi: 10.1002/prot.22558.

33.

Influence of surface groups of proteins on water studied by freezing/thawing hysteresis and infrared spectroscopy.

Zelent B, Bryan MA, Sharp KA, Vanderkooi JM.

Biophys Chem. 2009 May;141(2-3):222-30. doi: 10.1016/j.bpc.2009.02.002. Epub 2009 Feb 14.

PMID:
19251353
34.

Vibrational Stark Effects on Carbonyl, Nitrile, and Nitrosyl Compounds Including Heme Ligands, CO, CN, and NO, Studied with Density Functional Theory.

Dalosto SD, Vanderkooi JM, Sharp KA.

J Phys Chem B. 2004 May 20;108(20):6450-7. doi: 10.1021/jp0310697.

PMID:
18950134
35.

Finding and characterizing tunnels in macromolecules with application to ion channels and pores.

Coleman RG, Sharp KA.

Biophys J. 2009 Jan;96(2):632-45. doi: 10.1529/biophysj.108.135970.

36.

Re-evaluation of the model-free analysis of fast internal motion in proteins using NMR relaxation.

Frederick KK, Sharp KA, Warischalk N, Wand AJ.

J Phys Chem B. 2008 Sep 25;112(38):12095-103. doi: 10.1021/jp8038576. Epub 2008 Aug 29.

37.

Building alternate protein structures using the elastic network model.

Yang Q, Sharp KA.

Proteins. 2009 Feb 15;74(3):682-700. doi: 10.1002/prot.22184.

PMID:
18704927
38.

Surface-anchored monomeric agonist pMHCs alone trigger TCR with high sensitivity.

Ma Z, Sharp KA, Janmey PA, Finkel TH.

PLoS Biol. 2008 Feb;6(2):e43. doi: 10.1371/journal.pbio.0060043.

39.

Explicit ion, implicit water solvation for molecular dynamics of nucleic acids and highly charged molecules.

Prabhu NV, Panda M, Yang Q, Sharp KA.

J Comput Chem. 2008 May;29(7):1113-30.

PMID:
18074338
40.

Temperature dependence of fast dynamics in proteins.

Song XJ, Flynn PF, Sharp KA, Wand AJ.

Biophys J. 2007 Mar 15;92(6):L43-5. Epub 2007 Jan 11.

41.

Travel depth, a new shape descriptor for macromolecules: application to ligand binding.

Coleman RG, Sharp KA.

J Mol Biol. 2006 Sep 22;362(3):441-58. Epub 2006 Jul 15.

PMID:
16934837
42.

Hydrogen bonding and the cryoprotective properties of glycerol/water mixtures.

Dashnau JL, Nucci NV, Sharp KA, Vanderkooi JM.

J Phys Chem B. 2006 Jul 13;110(27):13670-7.

PMID:
16821896
43.

Atomic Charge Parameters for the Finite Difference Poisson-Boltzmann Method Using Electronegativity Neutralization.

Yang Q, Sharp KA.

J Chem Theory Comput. 2006 Jul;2(4):1152-67. doi: 10.1021/ct060009c.

PMID:
26633072
44.

Carbohydrate intramolecular hydrogen bonding cooperativity and its effect on water structure.

Dashnau JL, Sharp KA, Vanderkooi JM.

J Phys Chem B. 2005 Dec 22;109(50):24152-9.

PMID:
16375407
45.

Heat capacity in proteins.

Prabhu NV, Sharp KA.

Annu Rev Phys Chem. 2005;56:521-48. Review.

PMID:
15796710
46.
48.

The mechanism of the type III antifreeze protein action: a computational study.

Yang C, Sharp KA.

Biophys Chem. 2004 Apr 1;109(1):137-48.

PMID:
15059666
49.

Accessibility of oxygen with respect to the heme pocket in horseradish peroxidase.

Khajehpour M, Rietveld I, Vinogradov S, Prabhu NV, Sharp KA, Vanderkooi JM.

Proteins. 2003 Nov 15;53(3):656-66.

PMID:
14579357
50.

Solvent dependent and independent motions of CO-horseradish peroxidase examined by infrared spectroscopy and molecular dynamics calculations.

Kaposi AD, Prabhu NV, Dalosto SD, Sharp KA, Wright WW, Stavrov SS, Vanderkooi JM.

Biophys Chem. 2003 Oct 1;106(1):1-14.

PMID:
14516907

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