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RNA Localization in Bacteria.

Fei J, Sharma CM.

Microbiol Spectr. 2018 Sep;6(5). doi: 10.1128/microbiolspec.RWR-0024-2018.


Central nervous system blast crisis of chronic myeloid leukaemia misdiagnosed as tubercular meningitis.

Kumawat BL, Sharma CM, Saini PK, Garg A.

BMJ Case Rep. 2018 Jun 12;2018. pii: bcr-2017-223923. doi: 10.1136/bcr-2017-223923.


CRISPR RNA-Dependent Binding and Cleavage of Endogenous RNAs by the Campylobacter jejuni Cas9.

Dugar G, Leenay RT, Eisenbart SK, Bischler T, Aul BU, Beisel CL, Sharma CM.

Mol Cell. 2018 Mar 1;69(5):893-905.e7. doi: 10.1016/j.molcel.2018.01.032.


Mercury Concentrations in the Fish Community from Indrawati River, Nepal.

Pandey A, Sharma CM, Kang S, Zhang Q, Tripathee L, Guo J, Li X, Sun S, Paudyal R, Acharya P, Sillanpää M.

Bull Environ Contam Toxicol. 2017 Oct;99(4):500-505. doi: 10.1007/s00128-017-2161-z. Epub 2017 Aug 24.


Identification of the RNA Pyrophosphohydrolase RppH of Helicobacter pylori and Global Analysis of Its RNA Targets.

Bischler T, Hsieh PK, Resch M, Liu Q, Tan HS, Foley PL, Hartleib A, Sharma CM, Belasco JG.

J Biol Chem. 2017 Feb 3;292(5):1934-1950. doi: 10.1074/jbc.M116.761171. Epub 2016 Dec 14.


The primary transcriptome of the Escherichia coli O104:H4 pAA plasmid and novel insights into its virulence gene expression and regulation.

Berger P, Knödler M, Förstner KU, Berger M, Bertling C, Sharma CM, Vogel J, Karch H, Dobrindt U, Mellmann A.

Sci Rep. 2016 Oct 17;6:35307. doi: 10.1038/srep35307.


Preliminary Health Risk Assessment of Potentially Toxic Metals in Surface Water of the Himalayan Rivers, Nepal.

Tripathee L, Kang S, Sharma CM, Rupakheti D, Paudyal R, Huang J, Sillanpää M.

Bull Environ Contam Toxicol. 2016 Dec;97(6):855-862. Epub 2016 Oct 12.


Genome-wide identification of transcriptional start sites in the haloarchaeon Haloferax volcanii based on differential RNA-Seq (dRNA-Seq).

Babski J, Haas KA, Näther-Schindler D, Pfeiffer F, Förstner KU, Hammelmann M, Hilker R, Becker A, Sharma CM, Marchfelder A, Soppa J.

BMC Genomics. 2016 Aug 12;17(1):629. doi: 10.1186/s12864-016-2920-y.


Small RNAs in Bacterial Virulence and Communication.

Svensson SL, Sharma CM.

Microbiol Spectr. 2016 Jun;4(3). doi: 10.1128/microbiolspec.VMBF-0028-2015. Review.


Late-onset myoclonic epilepsy in Down syndrome (LOMEDS): A spectrum of progressive myoclonic epilepsy - Case report.

Sharma CM, Pandey RK, Kumawat BL, Khandelwal D.

Ann Indian Acad Neurol. 2016 Apr-Jun;19(2):267-8. doi: 10.4103/0972-2327.173411.


The CsrA-FliW network controls polar localization of the dual-function flagellin mRNA in Campylobacter jejuni.

Dugar G, Svensson SL, Bischler T, Wäldchen S, Reinhardt R, Sauer M, Sharma CM.

Nat Commun. 2016 May 27;7:11667. doi: 10.1038/ncomms11667.


A unique combination of autoimmune limbic encephalitis, type 1 diabetes, and Stiff person syndrome associated with GAD-65 antibody.

Sharma CM, Pandey RK, Kumawat BL, Khandelwal D, Gandhi P.

Ann Indian Acad Neurol. 2016 Jan-Mar;19(1):146-9. doi: 10.4103/0972-2327.165462.


Atmospheric Mercury Depositional Chronology Reconstructed from Lake Sediments and Ice Core in the Himalayas and Tibetan Plateau.

Kang S, Huang J, Wang F, Zhang Q, Zhang Y, Li C, Wang L, Chen P, Sharma CM, Li Q, Sillanpää M, Hou J, Xu B, Guo J.

Environ Sci Technol. 2016 Mar 15;50(6):2859-69. doi: 10.1021/acs.est.5b04172. Epub 2016 Feb 26.


Rare association of thin corpus callosum with infantile tremor syndrome in a 5.5-month-old infant.

Sharma CM, Sharma D, Kumar R, Ranjan R.

J Pediatr Neurosci. 2015 Jul-Sep;10(3):273-5. doi: 10.4103/1817-1745.165705.


Differential RNA-seq (dRNA-seq) for annotation of transcriptional start sites and small RNAs in Helicobacter pylori.

Bischler T, Tan HS, Nieselt K, Sharma CM.

Methods. 2015 Sep 15;86:89-101. doi: 10.1016/j.ymeth.2015.06.012. Epub 2015 Jun 16.


Investigating CRISPR RNA Biogenesis and Function Using RNA-seq.

Heidrich N, Dugar G, Vogel J, Sharma CM.

Methods Mol Biol. 2015;1311:1-21. doi: 10.1007/978-1-4939-2687-9_1.


Stable isotope labeling by amino acids in cell culture based proteomics reveals differences in protein abundances between spiral and coccoid forms of the gastric pathogen Helicobacter pylori.

Müller SA, Pernitzsch SR, Haange SB, Uetz P, von Bergen M, Sharma CM, Kalkhof S.

J Proteomics. 2015 Aug 3;126:34-45. doi: 10.1016/j.jprot.2015.05.011. Epub 2015 May 12.


Alien hand and leg as the presenting feature of probable sporadic Creutzfeldt-Jakob disease: A rare presentation of a rare disease.

Kumawat BL, Sharma CM, Nath K, Acharya M, Khandelwal D, Jain D.

Ann Indian Acad Neurol. 2015 Jan-Mar;18(1):99-102. doi: 10.4103/0972-2327.144278.


Differential RNA-seq of Vibrio cholerae identifies the VqmR small RNA as a regulator of biofilm formation.

Papenfort K, Förstner KU, Cong JP, Sharma CM, Bassler BL.

Proc Natl Acad Sci U S A. 2015 Feb 17;112(7):E766-75. doi: 10.1073/pnas.1500203112. Epub 2015 Feb 2.


Role of lorazepam challenge test in childhood catatonia.

Sharma CM, Jena S, Sharma D, Agrawal RP.

J Pediatr Neurosci. 2014 Sep-Dec;9(3):301-3. doi: 10.4103/1817-1745.147611. No abstract available.


Autosomal dominant cortical tremor, myoclonus, and epilepsy (ADCME): Probable first family from India.

Sharma CM, Nath K, Kumawat BL, Khandelwal D.

Ann Indian Acad Neurol. 2014 Oct;17(4):433-6. doi: 10.4103/0972-2327.144025.


Argonaute proteins affect siRNA levels and accumulation of a novel extrachromosomal DNA from the Dictyostelium retrotransposon DIRS-1.

Boesler B, Meier D, Förstner KU, Friedrich M, Hammann C, Sharma CM, Nellen W.

J Biol Chem. 2014 Dec 19;289(51):35124-38. doi: 10.1074/jbc.M114.612663. Epub 2014 Oct 28.


Profound impact of Hfq on nutrient acquisition, metabolism and motility in the plant pathogen Agrobacterium tumefaciens.

Möller P, Overlöper A, Förstner KU, Wen TN, Sharma CM, Lai EM, Narberhaus F.

PLoS One. 2014 Oct 17;9(10):e110427. doi: 10.1371/journal.pone.0110427. eCollection 2014.


Ribosome-controlled transcription termination is essential for the production of antibiotic microcin C.

Zukher I, Novikova M, Tikhonov A, Nesterchuk MV, Osterman IA, Djordjevic M, Sergiev PV, Sharma CM, Severinov K.

Nucleic Acids Res. 2014 Oct 29;42(19):11891-902. doi: 10.1093/nar/gku880. Epub 2014 Oct 1.


Global transcriptional start site mapping using differential RNA sequencing reveals novel antisense RNAs in Escherichia coli.

Thomason MK, Bischler T, Eisenbart SK, Förstner KU, Zhang A, Herbig A, Nieselt K, Sharma CM, Storz G.

J Bacteriol. 2015 Jan 1;197(1):18-28. doi: 10.1128/JB.02096-14. Epub 2014 Sep 29.


Primary transcriptome map of the hyperthermophilic archaeon Thermococcus kodakarensis.

Jäger D, Förstner KU, Sharma CM, Santangelo TJ, Reeve JN.

BMC Genomics. 2014 Aug 16;15:684. doi: 10.1186/1471-2164-15-684.


READemption-a tool for the computational analysis of deep-sequencing-based transcriptome data.

Förstner KU, Vogel J, Sharma CM.

Bioinformatics. 2014 Dec 1;30(23):3421-3. doi: 10.1093/bioinformatics/btu533. Epub 2014 Aug 13.


Differential RNA-seq: the approach behind and the biological insight gained.

Sharma CM, Vogel J.

Curr Opin Microbiol. 2014 Jun;19:97-105. doi: 10.1016/j.mib.2014.06.010. Epub 2014 Jul 12.


The risk of mercury exposure to the people consuming fish from Lake Phewa, Nepal.

Thapa DS, Sharma CM, Kang S, Sillanpää M.

Int J Environ Res Public Health. 2014 Jun 27;11(7):6771-9. doi: 10.3390/ijerph110706771.


Poland syndrome.

Sharma CM, Kumar S, Meghwani MK, Agrawal RP.

Indian J Hum Genet. 2014 Jan;20(1):82-4. doi: 10.4103/0971-6866.132764.


Reversible electrophysiological abnormalities in hypokalemic paralysis: Case report of two cases.

Sharma CM, Nath K, Parekh J.

Ann Indian Acad Neurol. 2014 Jan;17(1):100-2. doi: 10.4103/0972-2327.128566.


A sporadic case of klippel-feil syndrome type 2.

Sharma D, Sharma CM.

J Clin Neonatol. 2014 Jan;3(1):57-8. doi: 10.4103/2249-4847.128748. No abstract available.


Hemorrhagic varicella in chronic liver disease.

Sharma CM, Sharma D, Agrawal RP.

J Glob Infect Dis. 2014 Jan;6(1):39-41. doi: 10.4103/0974-777X.127951.


Comparative transcriptomics of two environmentally relevant cyanobacteria reveals unexpected transcriptome diversity.

Voigt K, Sharma CM, Mitschke J, Lambrecht SJ, Voß B, Hess WR, Steglich C.

ISME J. 2014 Oct;8(10):2056-68. doi: 10.1038/ismej.2014.57. Epub 2014 Apr 17.


Rare presentation of botulism with generalized fasciculations.

Arora A, Sharma CM, Kumawat B, Khandelwal D.

Int J Appl Basic Med Res. 2014 Jan;4(1):56-8. doi: 10.4103/2229-516X.125698.


Annual variation in flowering phenology, pollination, mating system, and pollen yield in two natural populations of Schima wallichii (DC.) Korth.

Khanduri VP, Sharma CM, Kumar KS, Ghildiyal SK.

ScientificWorldJournal. 2013 Dec 31;2013:350157. doi: 10.1155/2013/350157. eCollection 2013.


A variable homopolymeric G-repeat defines small RNA-mediated posttranscriptional regulation of a chemotaxis receptor in Helicobacter pylori.

Pernitzsch SR, Tirier SM, Beier D, Sharma CM.

Proc Natl Acad Sci U S A. 2014 Jan 28;111(4):E501-10. doi: 10.1073/pnas.1315152111. Epub 2014 Jan 13.


A classical case of neonatal varicella.

Sharma CM, Sharma D.

J Clin Neonatol. 2013 Oct;2(4):200. doi: 10.4103/2249-4847.123109.


"Neonatal Sepsis": Bacteria & their Susceptibility Pattern towards Antibiotics in Neonatal Intensive Care Unit.

Sharma CM, Agrawal RP, Sharan H, Kumar B, Sharma D, Bhatia SS.

J Clin Diagn Res. 2013 Nov;7(11):2511-3. doi: 10.7860/JCDR/2013/6796.3594. Epub 2013 Sep 30.


Ionic composition of wet precipitation over the southern slope of central Himalayas, Nepal.

Tripathee L, Kang S, Huang J, Sillanpää M, Sharma CM, Lüthi ZL, Guo J, Paudyal R.

Environ Sci Pollut Res Int. 2014 Feb;21(4):2677-87. doi: 10.1007/s11356-013-2197-5.


Target recognition, RNA methylation activity and transcriptional regulation of the Dictyostelium discoideum Dnmt2-homologue (DnmA).

Müller S, Windhof IM, Maximov V, Jurkowski T, Jeltsch A, Förstner KU, Sharma CM, Gräf R, Nellen W.

Nucleic Acids Res. 2013 Oct;41(18):8615-27. doi: 10.1093/nar/gkt634. Epub 2013 Jul 22.


In vivo mapping of RNA-RNA interactions in Staphylococcus aureus using the endoribonuclease III.

Lioliou E, Sharma CM, Altuvia Y, Caldelari I, Romilly C, Helfer AC, Margalit H, Romby P.

Methods. 2013 Sep 15;63(2):135-43. doi: 10.1016/j.ymeth.2013.06.033. Epub 2013 Jul 9.


Mercury concentrations in commercial fish species of Lake Phewa, Nepal.

Sharma CM, Basnet S, Kang S, Rosseland BO, Zhang Q, Pan K, Borgstrøm R, Li Q, Wang WX, Huang J, Teien HC, Sharma S.

Bull Environ Contam Toxicol. 2013 Sep;91(3):272-7. doi: 10.1007/s00128-013-1055-y. Epub 2013 Jul 10.


High-resolution transcriptome maps reveal strain-specific regulatory features of multiple Campylobacter jejuni isolates.

Dugar G, Herbig A, Förstner KU, Heidrich N, Reinhardt R, Nieselt K, Sharma CM.

PLoS Genet. 2013 May;9(5):e1003495. doi: 10.1371/journal.pgen.1003495. Epub 2013 May 16.


An archaeal sRNA targeting cis- and trans-encoded mRNAs via two distinct domains.

Jäger D, Pernitzsch SR, Richter AS, Backofen R, Sharma CM, Schmitz RA.

Nucleic Acids Res. 2012 Nov;40(21):10964-79. doi: 10.1093/nar/gks847. Epub 2012 Sep 10.


Functional characterization of the RNA chaperone Hfq in the opportunistic human pathogen Stenotrophomonas maltophilia.

Roscetto E, Angrisano T, Costa V, Casalino M, Förstner KU, Sharma CM, Di Nocera PP, De Gregorio E.

J Bacteriol. 2012 Nov;194(21):5864-74. doi: 10.1128/JB.00746-12. Epub 2012 Aug 24.


An atlas of Hfq-bound transcripts reveals 3' UTRs as a genomic reservoir of regulatory small RNAs.

Chao Y, Papenfort K, Reinhardt R, Sharma CM, Vogel J.

EMBO J. 2012 Oct 17;31(20):4005-19. doi: 10.1038/emboj.2012.229. Epub 2012 Aug 24.


Transcriptome complexity and riboregulation in the human pathogen Helicobacter pylori.

Pernitzsch SR, Sharma CM.

Front Cell Infect Microbiol. 2012 Feb 21;2:14. doi: 10.3389/fcimb.2012.00014. eCollection 2012. Review.


Global regulatory functions of the Staphylococcus aureus endoribonuclease III in gene expression.

Lioliou E, Sharma CM, Caldelari I, Helfer AC, Fechter P, Vandenesch F, Vogel J, Romby P.

PLoS Genet. 2012 Jun;8(6):e1002782. doi: 10.1371/journal.pgen.1002782. Epub 2012 Jun 28.


Reproductive ecology of male and female Strobili and mating system in two different populations of Pinus roxburghii.

Sharma CM, Khanduri VP, Ghildiyal SK.

ScientificWorldJournal. 2012;2012:271389. doi: 10.1100/2012/271389. Epub 2012 Apr 30.

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