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Items: 1 to 50 of 58

1.

Metagenomic analysis reveals distinct patterns of denitrification gene abundance across soil moisture, nitrate gradients.

Nadeau SA, Roco CA, Debenport SJ, Anderson TR, Hofmeister KL, Walter MT, Shapleigh JP.

Environ Microbiol. 2019 Apr;21(4):1255-1266. doi: 10.1111/1462-2920.14587. Epub 2019 Mar 21.

PMID:
30851141
2.

Metagenomic Evidence for a Methylocystis Species Capable of Bioremediation of Diverse Heavy Metals.

Shi LD, Chen YS, Du JJ, Hu YQ, Shapleigh JP, Zhao HP.

Front Microbiol. 2019 Jan 9;9:3297. doi: 10.3389/fmicb.2018.03297. eCollection 2018.

3.

Salinity-Aided Selection of Progressive Onset Denitrifiers as a Means of Providing Nitrite for Anammox.

Li W, Li H, Liu YD, Zheng P, Shapleigh JP.

Environ Sci Technol. 2018 Sep 18;52(18):10665-10672. doi: 10.1021/acs.est.8b02314. Epub 2018 Sep 10.

PMID:
30148965
4.

The Role of Denitrification in Stormwater Detention Basin Treatment of Nitrogen.

Morse NR, McPhillips LE, Shapleigh JP, Walter MT.

Environ Sci Technol. 2017 Jul 18;51(14):7928-7935. doi: 10.1021/acs.est.7b01813. Epub 2017 Jul 6.

PMID:
28640610
5.

Modularity of nitrogen-oxide reducing soil bacteria: linking phenotype to genotype.

Roco CA, Bergaust LL, Bakken LR, Yavitt JB, Shapleigh JP.

Environ Microbiol. 2017 Jun;19(6):2507-2519. doi: 10.1111/1462-2920.13250. Epub 2016 Mar 21.

PMID:
26914200
6.

Role of norEF in denitrification, elucidated by physiological experiments with Rhodobacter sphaeroides.

Bergaust LL, Hartsock A, Liu B, Bakken LR, Shapleigh JP.

J Bacteriol. 2014 Jun;196(12):2190-200. doi: 10.1128/JB.00003-14. Epub 2014 Apr 4.

7.

Metatranscriptomic analyses of plankton communities inhabiting surface and subpycnocline waters of the Chesapeake Bay during oxic-anoxic-oxic transitions.

Hewson I, Eggleston EM, Doherty M, Lee DY, Owens M, Shapleigh JP, Cornwell JC, Crump BC.

Appl Environ Microbiol. 2014 Jan;80(1):328-38. doi: 10.1128/AEM.02680-13. Epub 2013 Oct 25.

8.

A novel protein protects bacterial iron-dependent metabolism from nitric oxide.

Stern AM, Liu B, Bakken LR, Shapleigh JP, Zhu J.

J Bacteriol. 2013 Oct;195(20):4702-8. doi: 10.1128/JB.00836-13. Epub 2013 Aug 9.

9.

Draft genome sequences of five strains in the genus thauera.

Liu B, Frostegård A, Shapleigh JP.

Genome Announc. 2013 Jan;1(1). pii: e00052-12. doi: 10.1128/genomeA.00052-12. Epub 2013 Jan 31.

10.

Physiological roles for two periplasmic nitrate reductases in Rhodobacter sphaeroides 2.4.3 (ATCC 17025).

Hartsock A, Shapleigh JP.

J Bacteriol. 2011 Dec;193(23):6483-9. doi: 10.1128/JB.05324-11. Epub 2011 Sep 23.

11.

Oxygen control of nitrogen oxide respiration, focusing on α-proteobacteria.

Shapleigh JP.

Biochem Soc Trans. 2011 Jan;39(1):179-83. doi: 10.1042/BST0390179.

PMID:
21265769
12.

Mechanisms of oxygen inhibition of nirK expression in Rhodobacter sphaeroides.

Hartsock A, Shapleigh JP.

Microbiology. 2010 Oct;156(Pt 10):3158-65. doi: 10.1099/mic.0.038703-0. Epub 2010 Jul 1.

PMID:
20595263
13.

Identification, functional studies, and genomic comparisons of new members of the NnrR regulon in Rhodobacter sphaeroides.

Hartsock A, Shapleigh JP.

J Bacteriol. 2010 Feb;192(4):903-11. doi: 10.1128/JB.01026-09. Epub 2009 Dec 4.

14.

The role of arginine-127 at the proximal NO-binding site in determining the electronic structure and function of 5-coordinate NO-heme in cytochrome c' of Rhodobacter sphaeroides.

Lee B, Usov OM, Grigoryants VM, Myers WK, Shapleigh JP, Scholes CP.

Biochemistry. 2009 Sep 29;48(38):8985-93. doi: 10.1021/bi900833f.

15.

Agrobacterium tumefaciens C58 uses ActR and FnrN to control nirK and nor expression.

Baek SH, Hartsock A, Shapleigh JP.

J Bacteriol. 2008 Jan;190(1):78-86. Epub 2007 Nov 2.

16.

Selenite-reducing capacity of the copper-containing nitrite reductase of Rhizobium sullae.

Basaglia M, Toffanin A, Baldan E, Bottegal M, Shapleigh JP, Casella S.

FEMS Microbiol Lett. 2007 Apr;269(1):124-30. Epub 2007 Jan 15.

17.

EPR-ENDOR of the Cu(I)NO complex of nitrite reductase.

Usov OM, Sun Y, Grigoryants VM, Shapleigh JP, Scholes CP.

J Am Chem Soc. 2006 Oct 11;128(40):13102-11.

PMID:
17017790
18.

Electron transfer to nitrite reductase of Rhodobacter sphaeroides 2.4.3: examination of cytochromes c2 and cY.

Laratta WP, Nanaszko MJ, Shapleigh JP.

Microbiology. 2006 May;152(Pt 5):1479-88.

PMID:
16622064
19.

ENDOR of NO-ligated cytochrome c'.

Usov OM, Choi PS, Shapleigh JP, Scholes CP.

J Am Chem Soc. 2006 Apr 19;128(15):5021-32.

PMID:
16608336
20.

Assessing the impact of denitrifier-produced nitric oxide on other bacteria.

Choi PS, Naal Z, Moore C, Casado-Rivera E, Abruña HD, Helmann JD, Shapleigh JP.

Appl Environ Microbiol. 2006 Mar;72(3):2200-5.

21.

Investigation into the role of the truncated denitrification chain in Rhizobium sullae strain HCNT1.

Casella S, Shapleigh JP, Toffanin A, Basaglia M.

Biochem Soc Trans. 2006 Feb;34(Pt 1):130-2.

PMID:
16417501
22.

The home stretch, a first analysis of the nearly completed genome of Rhodobacter sphaeroides 2.4.1.

Mackenzie C, Choudhary M, Larimer FW, Predki PF, Stilwagen S, Armitage JP, Barber RD, Donohue TJ, Hosler JP, Newman JE, Shapleigh JP, Sockett RE, Zeilstra-Ryalls J, Kaplan S.

Photosynth Res. 2001;70(1):19-41.

PMID:
16228360
23.
24.

ENDOR investigation of the liganding environment of mixed-spin ferric cytochrome c'.

Usov OM, Choi PS, Shapleigh JP, Scholes CP.

J Am Chem Soc. 2005 Jul 6;127(26):9485-94.

PMID:
15984875
25.

Regulation and function of cytochrome c' in Rhodobacter sphaeroides 2.4.3.

Choi PS, Grigoryants VM, Abruña HD, Scholes CP, Shapleigh JP.

J Bacteriol. 2005 Jun;187(12):4077-85.

26.

Denitrification genes regulate Brucella virulence in mice.

Baek SH, Rajashekara G, Splitter GA, Shapleigh JP.

J Bacteriol. 2004 Sep;186(18):6025-31.

27.
28.

Spectroscopic studies of the Met182Thr mutant of nitrite reductase: role of the axial ligand in the geometric and electronic structure of blue and green copper sites.

Basumallick L, Szilagyi RK, Zhao Y, Shapleigh JP, Scholes CP, Solomon EI.

J Am Chem Soc. 2003 Dec 3;125(48):14784-92.

PMID:
14640653
29.

Use of a green fluorescent protein-based reporter fusion for detection of nitric oxide produced by denitrifiers.

Yin S, Fuangthong M, Laratta WP, Shapleigh JP.

Appl Environ Microbiol. 2003 Jul;69(7):3938-44.

30.
31.
32.

Taxis response of various denitrifying bacteria to nitrate and nitrite.

Lee DY, Ramos A, Macomber L, Shapleigh JP.

Appl Environ Microbiol. 2002 May;68(5):2140-7.

33.

Characterization of a member of the NnrR regulon in Rhodobacter sphaeroides 2.4.3 encoding a haem-copper protein.

Bartnikas TB, Wang Y, Bobo T, Veselov A, Scholes CP, Shapleigh JP.

Microbiology. 2002 Mar;148(Pt 3):825-33.

PMID:
11882718
34.

Amperometric TNT biosensor based on the oriented immobilization of a nitroreductase maltose binding protein fusion.

Naal Z, Park JH, Bernhard S, Shapleigh JP, Batt CA, Abruña HD.

Anal Chem. 2002 Jan 1;74(1):140-8.

PMID:
11795782
35.

Characterization of nirV and a gene encoding a novel pseudoazurin in Rhodobacter sphaeroides 2.4.3.

Jain R, Shapleigh JP.

Microbiology. 2001 Sep;147(Pt 9):2505-15.

PMID:
11535790
36.

FT-IR analysis of membranes of Rhodobacter sphaeroides 2.4.3 grown under microaerobic and denitrifying conditions.

Mitchell DM, Wang Y, Alben JO, Shapleigh JP.

Biochim Biophys Acta. 1998 Dec 1;1409(2):99-105.

38.
39.
40.

A nitrite biosensor based on a maltose binding protein nitrite reductase fusion immobilized on an electropolymerized film of a pyrrole-derived bipyridinium.

Wu Q, Storrier GD, Pariente F, Wang Y, Shapleigh JP, Abruña HD.

Anal Chem. 1997 Dec 1;69(23):4856-63.

PMID:
9406533
41.

Analysis of the role of the nnrR gene product in the response of Rhodobacter sphaeroides 2.4.1 to exogenous nitric oxide.

Kwiatkowski AV, Laratta WP, Toffanin A, Shapleigh JP.

J Bacteriol. 1997 Sep;179(17):5618-20.

42.

Characterization of the nitric oxide reductase-encoding region in Rhodobacter sphaeroides 2.4.3.

Bartnikas TB, Tosques IE, Laratta WP, Shi J, Shapleigh JP.

J Bacteriol. 1997 Jun;179(11):3534-40.

43.

Characterization and regulation of the gene encoding nitrite reductase in Rhodobacter sphaeroides 2.4.3.

Tosques IE, Kwiatkowski AV, Shi J, Shapleigh JP.

J Bacteriol. 1997 Feb;179(4):1090-5.

44.
46.
47.

Polar residues in helix VIII of subunit I of cytochrome c oxidase influence the activity and the structure of the active site.

Hosler JP, Shapleigh JP, Mitchell DM, Kim Y, Pressler MA, Georgiou C, Babcock GT, Alben JO, Ferguson-Miller S, Gennis RB.

Biochemistry. 1996 Aug 20;35(33):10776-83.

PMID:
8718868
49.

A pH-dependent polarity change at the binuclear center of reduced cytochrome c oxidase detected by FTIR difference spectroscopy of the CO adduct.

Mitchell DM, Shapleigh JP, Archer AM, Alben JO, Gennis RB.

Biochemistry. 1996 Jul 23;35(29):9446-50.

PMID:
8755723
50.

A novel cytochrome c oxidase from Rhodobacter sphaeroides that lacks CuA.

García-Horsman JA, Berry E, Shapleigh JP, Alben JO, Gennis RB.

Biochemistry. 1994 Mar 15;33(10):3113-9.

PMID:
8130226

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