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Complete Genome Sequence of Serratia quinivorans Strain 124R, a Facultative Anaerobe Isolated on Organosolv Lignin as a Sole Carbon Source.

Chaput G, Ford J, DeDiego L, Narayanan A, Tam WY, Whalen M, Huntemann M, Clum A, Spunde A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Chen IM, Stamatis D, Reddy TBK, O'Malley R, Daum C, Shapiro N, Ivanova N, Kyrpides NC, Woyke T, Glavina Del Rio T, DeAngelis K.

Microbiol Resour Announc. 2019 May 2;8(18). pii: e00409-19. doi: 10.1128/MRA.00409-19.


Genome-informed Bradyrhizobium taxonomy: where to from here?

Avontuur JR, Palmer M, Beukes CW, Chan WY, Coetzee MPA, Blom J, Stępkowski T, Kyrpides NC, Woyke T, Shapiro N, Whitman WB, Venter SN, Steenkamp ET.

Syst Appl Microbiol. 2019 Apr 4. pii: S0723-2020(19)30047-5. doi: 10.1016/j.syapm.2019.03.006. [Epub ahead of print]


Complement Deposition on the Surface of RBC After Trauma Serves A Biomarker of Moderate Trauma Severity: A Prospective Study.

Satyam A, Andreo K, Lapchak PH, Dalle Lucca JJ, Davis RB, Tsokos MG, Shapiro NI, Tsokos GC.

Shock. 2019 Apr 12. doi: 10.1097/SHK.0000000000001348. [Epub ahead of print]


Peer to Peer observation: real-world faculty development.

Shapiro N, Janjigian M, Schaye V, Hauck K, Becker D, Lusk P, Dembitzer A.

Med Educ. 2019 May;53(5):513-514. doi: 10.1111/medu.13865. No abstract available.


Improved Draft Genome Sequence of Pseudomonas poae A2-S9, a Strain with Plant Growth-Promoting Activity.

Xia Y, DeBolt S, Ma Q, McDermaid A, Wang C, Shapiro N, Woyke T, Kyrpides NC.

Microbiol Resour Announc. 2019 Apr 11;8(15). pii: e00275-19. doi: 10.1128/MRA.00275-19.


Improved Draft Genome Sequence of Bacillus sp. Strain YF23, Which Has Plant Growth-Promoting Activity.

Xia Y, DeBolt S, Ma Q, McDermaid A, Wang C, Shapiro N, Woyke T, Kyrpides NC.

Microbiol Resour Announc. 2019 Apr 11;8(15). pii: e00099-19. doi: 10.1128/MRA.00099-19.


High-quality draft genome sequence of Pseudomonas aeruginosa san ai, an environmental isolate resistant to heavy metals.

Izrael-Živković L, Beškoski V, Rikalović M, Kazazić S, Shapiro N, Woyke T, Gojgić-Cvijović G, Vrvić MM, Maksimović N, Karadžić I.

Extremophiles. 2019 Jul;23(4):399-405. doi: 10.1007/s00792-019-01092-w. Epub 2019 Apr 5.


Complete Genome Sequence for Asinibacterium sp. Strain OR53 and Draft Genome Sequence for Asinibacterium sp. Strain OR43, Two Bacteria Tolerant to Uranium.

Brzoska RM, Huntemann M, Clum A, Chen A, Kyrpides N, Palaniappan K, Ivanova N, Mikhailova N, Ovchinnikova G, Varghese N, Mukherjee S, Reddy TBK, Daum C, Shapiro N, Woyke T, Bollmann A.

Microbiol Resour Announc. 2019 Apr 4;8(14). pii: e01701-18. doi: 10.1128/MRA.01701-18.


Analysis of Diagnoses, Symptoms, Medications, and Admissions Among Patients With Cancer Presenting to Emergency Departments.

Caterino JM, Adler D, Durham DD, Yeung SJ, Hudson MF, Bastani A, Bernstein SL, Baugh CW, Coyne CJ, Grudzen CR, Henning DJ, Klotz A, Madsen TE, Pallin DJ, Reyes-Gibby CC, Rico JF, Ryan RJ, Shapiro NI, Swor R, Venkat A, Wilson J, Thomas CR Jr, Bischof JJ, Lyman GH.

JAMA Netw Open. 2019 Mar 1;2(3):e190979. doi: 10.1001/jamanetworkopen.2019.0979.


Bosea psychrotolerans sp. nov., a psychrotrophic alphaproteobacterium isolated from Lake Michigan water.

Albert RA, McGuine M, Pavlons SC, Roecker J, Bruess J, Mossman S, Sun S, King M, Hong S, Farrance CE, Danner J, Joung Y, Shapiro N, Whitman WB, Busse HJ.

Int J Syst Evol Microbiol. 2019 May;69(5):1376-1383. doi: 10.1099/ijsem.0.003319. Epub 2019 Mar 18.


Using the Boston Syncope Observation Management Pathway to Reduce Hospital Admission and Adverse Outcomes.

Mechanic OJ, Pascheles CY, Lopez GJ, Winans AM, Shapiro NI, Tibbles C, Wolfe RE, Grossman SA.

West J Emerg Med. 2019 Mar;20(2):250-255. doi: 10.5811/westjem.2018.11.39657. Epub 2019 Feb 4.


A workshop to train medicine faculty to teach clinical reasoning.

Schaye V, Janjigian M, Hauck K, Shapiro N, Becker D, Lusk P, Hardowar K, Zabar S, Dembitzer A.

Diagnosis (Berl). 2019 Jun 26;6(2):109-113. doi: 10.1515/dx-2018-0059.


Draft Genome of Burkholderia cenocepacia TAtl-371, a Strain from the Burkholderia cepacia Complex Retains Antagonism in Different Carbon and Nitrogen Sources.

Rojas-Rojas FU, Sánchez-López D, Tapia-García EY, Arroyo-Herrera I, Maymon M, Humm E, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TBK, Ivanova N, Kyrpides N, Woyke T, Shapiro N, Hirsch AM, Ibarra JA, Estrada-de Los Santos P.

Curr Microbiol. 2019 May;76(5):566-574. doi: 10.1007/s00284-019-01657-0. Epub 2019 Feb 28.


Lipopolysaccharide suppresses T cells by generating extracellular ATP that impairs their mitochondrial function via P2Y11 receptors.

Sueyoshi K, Ledderose C, Shen Y, Lee AH, Shapiro NI, Junger WG.

J Biol Chem. 2019 Apr 19;294(16):6283-6293. doi: 10.1074/jbc.RA118.007188. Epub 2019 Feb 20.


Direct pathway cloning of the sodorifen biosynthetic gene cluster and recombinant generation of its product in E. coli.

Duell ER, D'Agostino PM, Shapiro N, Woyke T, Fuchs TM, Gulder TAM.

Microb Cell Fact. 2019 Feb 7;18(1):32. doi: 10.1186/s12934-019-1080-6.


PCSK9 loss-of-function variants and risk of infection and sepsis in the Reasons for Geographic and Racial Differences in Stroke (REGARDS) cohort.

Mitchell KA, Moore JX, Rosenson RS, Irvin R, Guirgis FW, Shapiro N, Safford M, Wang HE.

PLoS One. 2019 Feb 6;14(2):e0210808. doi: 10.1371/journal.pone.0210808. eCollection 2019.


Chest computed tomography imaging utility for radiographically occult rib fractures in elderly fall-injured patients.

Singleton JM, Bilello LA, Canham LS, Levenson RB, Lopez GJ, Tadiri SP, Shapiro NI, Rosen CL.

J Trauma Acute Care Surg. 2019 May;86(5):838-843. doi: 10.1097/TA.0000000000002208.


The glycocalyx: a novel diagnostic and therapeutic target in sepsis.

Uchimido R, Schmidt EP, Shapiro NI.

Crit Care. 2019 Jan 17;23(1):16. doi: 10.1186/s13054-018-2292-6. Review.


Effect of Levocarnitine vs Placebo as an Adjunctive Treatment for Septic Shock: The Rapid Administration of Carnitine in Sepsis (RACE) Randomized Clinical Trial.

Jones AE, Puskarich MA, Shapiro NI, Guirgis FW, Runyon M, Adams JY, Sherwin R, Arnold R, Roberts BW, Kurz MC, Wang HE, Kline JA, Courtney DM, Trzeciak S, Sterling SA, Nandi U, Patki D, Viele K.

JAMA Netw Open. 2018 Dec 7;1(8):e186076. doi: 10.1001/jamanetworkopen.2018.6076.


The Potential Role of Ultrasound in the Work-up of Appendicitis in the Emergency Department.

Tyler PD, Carey J, Stashko E, Levenson RB, Shapiro NI, Rosen CL.

J Emerg Med. 2019 Feb;56(2):191-196. doi: 10.1016/j.jemermed.2018.10.034. Epub 2018 Dec 26.


Portable, non-powered, suction-generating device for management of life-threatening aerodigestive tract foreign bodies: Novel prototype and literature review.

Patel PB, Shapiro NL.

Int J Pediatr Otorhinolaryngol. 2019 Mar;118:31-35. doi: 10.1016/j.ijporl.2018.12.014. Epub 2018 Dec 11. Review.


Validation of the REGARDS Severe Sepsis Risk Score.

Wang HE, Donnelly JP, Yende S, Levitan EB, Shapiro NI, Dai Y, Zhao H, Heiss G, Odden M, Newman A, Safford M.

J Clin Med. 2018 Dec 11;7(12). pii: E536. doi: 10.3390/jcm7120536.


Genome Sequences of Actinobacteria from Extreme Environments in Colombia.

Cantillo A, Shapiro N, Woyke T, Kyrpides NC, Baena S, Zambrano MM.

Microbiol Resour Announc. 2018 Dec 6;7(22). pii: e01384-18. doi: 10.1128/MRA.01384-18. eCollection 2018 Dec.


Draft Genome Sequences of New Isolates and the Known Species of the Family Microbacteriaceae Associated with Plants.

Vasilenko OV, Starodumova IP, Dorofeeva LV, Tarlachkov SV, Prisyazhnaya NV, Chizhov VN, Subbotin SA, Huntemann M, Clum A, Duffy K, Pillay M, Palaniappan K, Varghese N, Chen IA, Stamatis D, Reddy TBK, O'Malley R, Daum C, Shapiro N, Ivanova N, Kyrpides NC, Woyke T, Whitman WB, Evtushenko LI.

Microbiol Resour Announc. 2018 Sep 20;7(11). pii: e01051-18. doi: 10.1128/MRA.01051-18. eCollection 2018 Sep.


Microcirculatory perfusion disturbances in septic shock: results from the ProCESS trial.

Massey MJ, Hou PC, Filbin M, Wang H, Ngo L, Huang DT, Aird WC, Novack V, Trzeciak S, Yealy DM, Kellum JA, Angus DC, Shapiro NI; ProCESS investigators.

Crit Care. 2018 Nov 20;22(1):308. doi: 10.1186/s13054-018-2240-5.


Partial pressure of arterial carbon dioxide after resuscitation from cardiac arrest and neurological outcome: A prospective multi-center protocol-directed cohort study.

Hope Kilgannon J, Hunter BR, Puskarich MA, Shea L, Fuller BM, Jones C, Donnino M, Kline JA, Jones AE, Shapiro NI, Abella BS, Trzeciak S, Roberts BW.

Resuscitation. 2019 Feb;135:212-220. doi: 10.1016/j.resuscitation.2018.11.015. Epub 2018 Nov 16.


The 10 signs telling me that my cancer patient in the emergency department is at high risk of becoming critically ill.

Peyrony O, Shapiro NI.

Intensive Care Med. 2018 Dec;44(12):2315-2318. doi: 10.1007/s00134-018-5449-5. Epub 2018 Nov 12. No abstract available.


Charge Reductions Associated With Shorter Time to Recovery in Septic Shock.

Self WH, Liu D, Strayer N, Russ S, Ward MJ, Shapiro NI, Rice TW, Semler MW.

Chest. 2019 Feb;155(2):315-321. doi: 10.1016/j.chest.2018.10.034. Epub 2018 Nov 9.


Mean arterial pressure and mortality in patients with distributive shock: a retrospective analysis of the MIMIC-III database.

Vincent JL, Nielsen ND, Shapiro NI, Gerbasi ME, Grossman A, Doroff R, Zeng F, Young PJ, Russell JA.

Ann Intensive Care. 2018 Nov 8;8(1):107. doi: 10.1186/s13613-018-0448-9.


Association Between Elevated Mean Arterial Blood Pressure and Neurologic Outcome After Resuscitation From Cardiac Arrest: Results From a Multicenter Prospective Cohort Study.

Roberts BW, Kilgannon JH, Hunter BR, Puskarich MA, Shea L, Donnino M, Jones C, Fuller BM, Kline JA, Jones AE, Shapiro NI, Abella BS, Trzeciak S.

Crit Care Med. 2019 Jan;47(1):93-100. doi: 10.1097/CCM.0000000000003474.


Corrigendum to 'Epidemiological characteristics of pediatric epistaxis presenting to the emergency department' International Journal of Pediatric Otorhinolaryngology (2017) 121-124.

Shay S, Shapiro NL, Bhattacharyya N.

Int J Pediatr Otorhinolaryngol. 2018 Dec;115:193. doi: 10.1016/j.ijporl.2018.09.030. Epub 2018 Oct 3. No abstract available.


In vivo quantification of rolling and adhered leukocytes in human sepsis.

Fabian-Jessing BK, Massey MJ, Filbin MR, Hou PC, Wang HE, Kirkegaard H, Yealy DM, Aird WC, Kellum JA, Angus DC, Shapiro NI; ProCESS Investigators.

Crit Care. 2018 Sep 30;22(1):240. doi: 10.1186/s13054-018-2173-z.


Do demographic disparities exist in the diagnosis and surgical management of otitis media?

Chang JE, Shapiro NL, Bhattacharyya N.

Laryngoscope. 2018 Dec;128(12):2898-2901. doi: 10.1002/lary.27396. Epub 2018 Sep 19.


Leukocyte Transcriptional Response in Sepsis.

Skibsted S, Bhasin MK, Henning DJ, Jaminet SC, Lewandowski J, Kirkegaard H, Aird WC, Shapiro NI.

Shock. 2018 Sep 11. doi: 10.1097/SHK.0000000000001258. [Epub ahead of print]


Liberal or restricted fluid resuscitation in critical illness: Shifting the needle back towards equipoise.

Macdonald SP, Shapiro NI.

Emerg Med Australas. 2018 Aug;30(4):446-447. doi: 10.1111/1742-6723.13130. No abstract available.


Polysaccharide utilization loci of North Sea Flavobacteriia as basis for using SusC/D-protein expression for predicting major phytoplankton glycans.

Kappelmann L, Krüger K, Hehemann JH, Harder J, Markert S, Unfried F, Becher D, Shapiro N, Schweder T, Amann RI, Teeling H.

ISME J. 2019 Jan;13(1):76-91. doi: 10.1038/s41396-018-0242-6. Epub 2018 Aug 15.


Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae.

Estrada-de Los Santos P, Palmer M, Chávez-Ramírez B, Beukes C, Steenkamp ET, Briscoe L, Khan N, Maluk M, Lafos M, Humm E, Arrabit M, Crook M, Gross E, Simon MF, Dos Reis Junior FB, Whitman WB, Shapiro N, Poole PS, Hirsch AM, Venter SN, James EK.

Genes (Basel). 2018 Aug 1;9(8). pii: E389. doi: 10.3390/genes9080389.


c-KIT-Positive Fatal Diffuse Cutaneous Mastocytosis With Systemic Manifestations in a Neonate.

Chaudhary N, Shapiro N, Bhutada A, Rastogi S.

J Pediatr Hematol Oncol. 2018 Jul 31. doi: 10.1097/MPH.0000000000001271. [Epub ahead of print]


Challenges and Opportunities for Emergency Department Sepsis Screening at Triage.

Filbin MR, Thorsen JE, Lynch J, Gillingham TD, Pasakarnis CL, Capp R, Shapiro NI, Mooncai T, Hou PC, Heldt T, Reisner AT.

Sci Rep. 2018 Jul 23;8(1):11059. doi: 10.1038/s41598-018-29427-1.


Challenging Dogma: The Value of Bolus Fluids in the Early Resuscitation of Hyperdynamic Sepsis.

Hippensteel JA, Shapiro NI, Schmidt EP.

Am J Respir Crit Care Med. 2018 Oct 15;198(8):981-983. doi: 10.1164/rccm.201806-1071ED. No abstract available.


Sepsis-3 Septic Shock Criteria and Associated Mortality Among Infected Hospitalized Patients Assessed by a Rapid Response Team.

Fernando SM, Reardon PM, Rochwerg B, Shapiro NI, Yealy DM, Seely AJE, Perry JJ, Barnaby DP, Murphy K, Tanuseputro P, Kyeremanteng K.

Chest. 2018 Aug;154(2):309-316. doi: 10.1016/j.chest.2018.05.004. Epub 2018 May 17.


A prospective, multi-centre US clinical trial to determine accuracy of FebriDx point-of-care testing for acute upper respiratory infections with and without a confirmed fever.

Shapiro NI, Self WH, Rosen J, Sharp SC, Filbin MR, Hou PC, Parekh AD, Kurz MC, Sambursky R.

Ann Med. 2018 Aug;50(5):420-429. doi: 10.1080/07853890.2018.1474002. Epub 2018 May 18.


Liberal Versus Restrictive Intravenous Fluid Therapy for Early Septic Shock: Rationale for a Randomized Trial.

Self WH, Semler MW, Bellomo R, Brown SM, deBoisblanc BP, Exline MC, Ginde AA, Grissom CK, Janz DR, Jones AE, Liu KD, Macdonald SPJ, Miller CD, Park PK, Reineck LA, Rice TW, Steingrub JS, Talmor D, Yealy DM, Douglas IS, Shapiro NI; CLOVERS Protocol Committee and NHLBI Prevention and Early Treatment of Acute Lung Injury (PETAL) Network Investigators.

Ann Emerg Med. 2018 Oct;72(4):457-466. doi: 10.1016/j.annemergmed.2018.03.039. Epub 2018 May 10.


History of US Presidential Assaults on Modern Environmental Health Protection.

Fredrickson L, Sellers C, Dillon L, Ohayon JL, Shapiro N, Sullivan M, Bocking S, Brown P, de la Rosa V, Harrison J, Johns S, Kulik K, Lave R, Murphy M, Piper L, Richter L, Wylie S.

Am J Public Health. 2018 Apr;108(S2):S95-S103. doi: 10.2105/AJPH.2018.304396.


The Environmental Protection Agency in the Early Trump Administration: Prelude to Regulatory Capture.

Dillon L, Sellers C, Underhill V, Shapiro N, Ohayon JL, Sullivan M, Brown P, Harrison J, Wylie S; “EPA Under Siege” Writing Group.

Am J Public Health. 2018 Apr;108(S2):S89-S94. doi: 10.2105/AJPH.2018.304360.


Comparison of Emergency Medicine Malpractice Cases Involving Residents to Nonresident Cases.

Gurley KL, Grossman SA, Janes M, Yu-Moe CW, Song E, Tibbles CD, Shapiro NI, Rosen CL.

Acad Emerg Med. 2018 Sep;25(9):980-986. doi: 10.1111/acem.13430.


Comparing Ran-Out Status of Inhaled Short-Acting Beta-Agonists in Emergency Department Patients with Acute Asthma: 1996-1998 versus 2015-2017.

Goto T, Camargo CA Jr, Gimenez-Zapiola C, Pallin DJ, Shapiro NI, Ferro TJ, Rainville C, Stoyanov S, Hasegawa K.

J Allergy Clin Immunol Pract. 2018 Nov - Dec;6(6):1999-2005.e3. doi: 10.1016/j.jaip.2018.04.001. Epub 2018 Apr 11.


Genome-based evolutionary history of Pseudomonas spp.

Hesse C, Schulz F, Bull CT, Shaffer BT, Yan Q, Shapiro N, Hassan KA, Varghese N, Elbourne LDH, Paulsen IT, Kyrpides N, Woyke T, Loper JE.

Environ Microbiol. 2018 Jun;20(6):2142-2159. doi: 10.1111/1462-2920.14130. Epub 2018 Jul 22.


Corrigendum: Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato.

Beukes CW, Palmer M, Manyaka P, Chan WY, Avontuur JR, van Zyl E, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TBK, Daum C, Shapiro N, Markowitz V, Ivanova N, Kyrpides N, Woyke T, Blom J, Whitman WB, Venter SN, Steenkamp ET.

Front Microbiol. 2018 Mar 2;9:373. doi: 10.3389/fmicb.2018.00373. eCollection 2018.

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