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Items: 1 to 50 of 60

1.

Restoration of Bacterial Microbiome Composition and Diversity Among Treatment Responders in a Phase 2 Trial of RBX2660: An Investigational Microbiome Restoration Therapeutic.

Blount KF, Shannon WD, Deych E, Jones C.

Open Forum Infect Dis. 2019 Apr 11;6(4):ofz095. doi: 10.1093/ofid/ofz095. eCollection 2019 Apr.

2.

Independence of gut bacterial content and neonatal necrotizing enterocolitis severity.

Barron LK, Warner BB, Tarr PI, Shannon WD, Deych E, Warner BW.

J Pediatr Surg. 2017 Jun;52(6):993-998. doi: 10.1016/j.jpedsurg.2017.03.029. Epub 2017 Apr 5.

3.

Daily global stress is associated with nocturnal asthma awakenings in school-age children.

Horner CC, Dula C, Bacharier LB, Garbutt JM, Gonzalez C, Deych E, Shannon WD, Strunk RC.

J Allergy Clin Immunol. 2016 Oct;138(4):1196-1199.e3. doi: 10.1016/j.jaci.2016.01.054. Epub 2016 Apr 21. No abstract available.

PMID:
27246525
4.

A web application for sample size and power calculation in case-control microbiome studies.

Mattiello F, Verbist B, Faust K, Raes J, Shannon WD, Bijnens L, Thas O.

Bioinformatics. 2016 Jul 1;32(13):2038-40. doi: 10.1093/bioinformatics/btw099. Epub 2016 Feb 19.

PMID:
27153704
5.

Gut bacteria dysbiosis and necrotising enterocolitis in very low birthweight infants: a prospective case-control study.

Warner BB, Deych E, Zhou Y, Hall-Moore C, Weinstock GM, Sodergren E, Shaikh N, Hoffmann JA, Linneman LA, Hamvas A, Khanna G, Rouggly-Nickless LC, Ndao IM, Shands BA, Escobedo M, Sullivan JE, Radmacher PG, Shannon WD, Tarr PI.

Lancet. 2016 May 7;387(10031):1928-36. doi: 10.1016/S0140-6736(16)00081-7. Epub 2016 Mar 9.

6.

Gibbs distribution for statistical analysis of graphical data with a sample application to fcMRI brain images.

La Rosa PS, Brooks TL, Deych E, Shands B, Prior F, Larson-Prior LJ, Shannon WD.

Stat Med. 2016 Feb 20;35(4):566-80. doi: 10.1002/sim.6757. Epub 2015 Nov 25.

PMID:
26608238
7.

Impact of neonatal intensive care bed configuration on rates of late-onset bacterial sepsis and methicillin-resistant Staphylococcus aureus colonization.

Julian S, Burnham CA, Sellenriek P, Shannon WD, Hamvas A, Tarr PI, Warner BB.

Infect Control Hosp Epidemiol. 2015 Oct;36(10):1173-82. doi: 10.1017/ice.2015.144. Epub 2015 Jun 25.

8.

Patterned progression of bacterial populations in the premature infant gut.

La Rosa PS, Warner BB, Zhou Y, Weinstock GM, Sodergren E, Hall-Moore CM, Stevens HJ, Bennett WE Jr, Shaikh N, Linneman LA, Hoffmann JA, Hamvas A, Deych E, Shands BA, Shannon WD, Tarr PI.

Proc Natl Acad Sci U S A. 2014 Aug 26;111(34):12522-7. doi: 10.1073/pnas.1409497111. Epub 2014 Aug 11. Erratum in: Proc Natl Acad Sci U S A. 2014 Dec 2;111(48):17336.

9.

Reactivation of multiple viruses in patients with sepsis.

Walton AH, Muenzer JT, Rasche D, Boomer JS, Sato B, Brownstein BH, Pachot A, Brooks TL, Deych E, Shannon WD, Green JM, Storch GA, Hotchkiss RS.

PLoS One. 2014 Jun 11;9(2):e98819. doi: 10.1371/journal.pone.0098819. eCollection 2014.

10.

Exploration of bacterial community classes in major human habitats.

Zhou Y, Mihindukulasuriya KA, Gao H, La Rosa PS, Wylie KM, Martin JC, Kota K, Shannon WD, Mitreva M, Sodergren E, Weinstock GM.

Genome Biol. 2014 May 7;15(5):R66. doi: 10.1186/gb-2014-15-5-r66.

11.

Rapamycin nanoparticles target defective autophagy in muscular dystrophy to enhance both strength and cardiac function.

Bibee KP, Cheng YJ, Ching JK, Marsh JN, Li AJ, Keeling RM, Connolly AM, Golumbek PT, Myerson JW, Hu G, Chen J, Shannon WD, Lanza GM, Weihl CC, Wickline SA.

FASEB J. 2014 May;28(5):2047-61. doi: 10.1096/fj.13-237388. Epub 2014 Feb 5.

12.

Identifying symptom co-occurrence in persons with multiple sclerosis.

Newland PK, Flick LH, Thomas FP, Shannon WD.

Clin Nurs Res. 2014 Oct;23(5):529-43. doi: 10.1177/1054773813497221. Epub 2013 Sep 17.

PMID:
24045652
13.

Biogeography of the ecosystems of the healthy human body.

Zhou Y, Gao H, Mihindukulasuriya KA, La Rosa PS, Wylie KM, Vishnivetskaya T, Podar M, Warner B, Tarr PI, Nelson DE, Fortenberry JD, Holland MJ, Burr SE, Shannon WD, Sodergren E, Weinstock GM.

Genome Biol. 2013 Jan 14;14(1):R1. doi: 10.1186/gb-2013-14-1-r1.

14.

Hypothesis testing and power calculations for taxonomic-based human microbiome data.

La Rosa PS, Brooks JP, Deych E, Boone EL, Edwards DJ, Wang Q, Sodergren E, Weinstock G, Shannon WD.

PLoS One. 2012;7(12):e52078. doi: 10.1371/journal.pone.0052078. Epub 2012 Dec 20.

15.

Statistical object data analysis of taxonomic trees from human microbiome data.

La Rosa PS, Shands B, Deych E, Zhou Y, Sodergren E, Weinstock G, Shannon WD.

PLoS One. 2012;7(11):e48996. doi: 10.1371/journal.pone.0048996. Epub 2012 Nov 9.

16.

Detection of viruses in young children with fever without an apparent source.

Colvin JM, Muenzer JT, Jaffe DM, Smason A, Deych E, Shannon WD, Arens MQ, Buller RS, Lee WM, Weinstock EJ, Weinstock GM, Storch GA.

Pediatrics. 2012 Dec;130(6):e1455-62. doi: 10.1542/peds.2012-1391. Epub 2012 Nov 5.

17.

The origin and evolution of mutations in acute myeloid leukemia.

Welch JS, Ley TJ, Link DC, Miller CA, Larson DE, Koboldt DC, Wartman LD, Lamprecht TL, Liu F, Xia J, Kandoth C, Fulton RS, McLellan MD, Dooling DJ, Wallis JW, Chen K, Harris CC, Schmidt HK, Kalicki-Veizer JM, Lu C, Zhang Q, Lin L, O'Laughlin MD, McMichael JF, Delehaunty KD, Fulton LA, Magrini VJ, McGrath SD, Demeter RT, Vickery TL, Hundal J, Cook LL, Swift GW, Reed JP, Alldredge PA, Wylie TN, Walker JR, Watson MA, Heath SE, Shannon WD, Varghese N, Nagarajan R, Payton JE, Baty JD, Kulkarni S, Klco JM, Tomasson MH, Westervelt P, Walter MJ, Graubert TA, DiPersio JF, Ding L, Mardis ER, Wilson RK.

Cell. 2012 Jul 20;150(2):264-78. doi: 10.1016/j.cell.2012.06.023.

18.

Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing.

Ding L, Ley TJ, Larson DE, Miller CA, Koboldt DC, Welch JS, Ritchey JK, Young MA, Lamprecht T, McLellan MD, McMichael JF, Wallis JW, Lu C, Shen D, Harris CC, Dooling DJ, Fulton RS, Fulton LL, Chen K, Schmidt H, Kalicki-Veizer J, Magrini VJ, Cook L, McGrath SD, Vickery TL, Wendl MC, Heath S, Watson MA, Link DC, Tomasson MH, Shannon WD, Payton JE, Kulkarni S, Westervelt P, Walter MJ, Graubert TA, Mardis ER, Wilson RK, DiPersio JF.

Nature. 2012 Jan 11;481(7382):506-10. doi: 10.1038/nature10738.

19.

DNMT3A mutations in acute myeloid leukemia.

Ley TJ, Ding L, Walter MJ, McLellan MD, Lamprecht T, Larson DE, Kandoth C, Payton JE, Baty J, Welch J, Harris CC, Lichti CF, Townsend RR, Fulton RS, Dooling DJ, Koboldt DC, Schmidt H, Zhang Q, Osborne JR, Lin L, O'Laughlin M, McMichael JF, Delehaunty KD, McGrath SD, Fulton LA, Magrini VJ, Vickery TL, Hundal J, Cook LL, Conyers JJ, Swift GW, Reed JP, Alldredge PA, Wylie T, Walker J, Kalicki J, Watson MA, Heath S, Shannon WD, Varghese N, Nagarajan R, Westervelt P, Tomasson MH, Link DC, Graubert TA, DiPersio JF, Mardis ER, Wilson RK.

N Engl J Med. 2010 Dec 16;363(25):2424-33. doi: 10.1056/NEJMoa1005143. Epub 2010 Nov 10.

20.

One-year effects of vitamin D and calcium supplementation on chronic periodontitis.

Garcia MN, Hildebolt CF, Miley DD, Dixon DA, Couture RA, Spearie CL, Langenwalter EM, Shannon WD, Deych E, Mueller C, Civitelli R.

J Periodontol. 2011 Jan;82(1):25-32. doi: 10.1902/jop.2010.100207. Epub 2010 Sep 1.

21.

In vivo administration of hypomethylating agents mitigate graft-versus-host disease without sacrificing graft-versus-leukemia.

Choi J, Ritchey J, Prior JL, Holt M, Shannon WD, Deych E, Piwnica-Worms DR, DiPersio JF.

Blood. 2010 Jul 8;116(1):129-39. doi: 10.1182/blood-2009-12-257253. Epub 2010 Apr 27.

22.

Cross-sectional study of vitamin D and calcium supplementation effects on chronic periodontitis.

Miley DD, Garcia MN, Hildebolt CF, Shannon WD, Couture RA, Anderson Spearie CL, Dixon DA, Langenwalter EM, Mueller C, Civitelli R.

J Periodontol. 2009 Sep;80(9):1433-9. doi: 10.1902/jop.2009.090077.

23.

Recurring mutations found by sequencing an acute myeloid leukemia genome.

Mardis ER, Ding L, Dooling DJ, Larson DE, McLellan MD, Chen K, Koboldt DC, Fulton RS, Delehaunty KD, McGrath SD, Fulton LA, Locke DP, Magrini VJ, Abbott RM, Vickery TL, Reed JS, Robinson JS, Wylie T, Smith SM, Carmichael L, Eldred JM, Harris CC, Walker J, Peck JB, Du F, Dukes AF, Sanderson GE, Brummett AM, Clark E, McMichael JF, Meyer RJ, Schindler JK, Pohl CS, Wallis JW, Shi X, Lin L, Schmidt H, Tang Y, Haipek C, Wiechert ME, Ivy JV, Kalicki J, Elliott G, Ries RE, Payton JE, Westervelt P, Tomasson MH, Watson MA, Baty J, Heath S, Shannon WD, Nagarajan R, Link DC, Walter MJ, Graubert TA, DiPersio JF, Wilson RK, Ley TJ.

N Engl J Med. 2009 Sep 10;361(11):1058-66. doi: 10.1056/NEJMoa0903840. Epub 2009 Aug 5.

24.

Acquired copy number alterations in adult acute myeloid leukemia genomes.

Walter MJ, Payton JE, Ries RE, Shannon WD, Deshmukh H, Zhao Y, Baty J, Heath S, Westervelt P, Watson MA, Tomasson MH, Nagarajan R, O'Gara BP, Bloomfield CD, Mrózek K, Selzer RR, Richmond TA, Kitzman J, Geoghegan J, Eis PS, Maupin R, Fulton RS, McLellan M, Wilson RK, Mardis ER, Link DC, Graubert TA, DiPersio JF, Ley TJ.

Proc Natl Acad Sci U S A. 2009 Aug 4;106(31):12950-5. doi: 10.1073/pnas.0903091106. Epub 2009 Jul 27.

25.

Improving adherence to dyslipidemia medication guidelines in hospitalized diabetic patients using a technology-assisted pharmacist intervention.

McKinnon PS, Seaton T, Noirot LA, Reichley RM, Heard KM, Shannon WD, Goldberg AC, Dunagan WC, Bailey TC.

AMIA Annu Symp Proc. 2008 Nov 6:868.

PMID:
18999065
26.

DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome.

Ley TJ, Mardis ER, Ding L, Fulton B, McLellan MD, Chen K, Dooling D, Dunford-Shore BH, McGrath S, Hickenbotham M, Cook L, Abbott R, Larson DE, Koboldt DC, Pohl C, Smith S, Hawkins A, Abbott S, Locke D, Hillier LW, Miner T, Fulton L, Magrini V, Wylie T, Glasscock J, Conyers J, Sander N, Shi X, Osborne JR, Minx P, Gordon D, Chinwalla A, Zhao Y, Ries RE, Payton JE, Westervelt P, Tomasson MH, Watson M, Baty J, Ivanovich J, Heath S, Shannon WD, Nagarajan R, Walter MJ, Link DC, Graubert TA, DiPersio JF, Wilson RK.

Nature. 2008 Nov 6;456(7218):66-72. doi: 10.1038/nature07485.

27.

Somatic mutations and germline sequence variants in the expressed tyrosine kinase genes of patients with de novo acute myeloid leukemia.

Tomasson MH, Xiang Z, Walgren R, Zhao Y, Kasai Y, Miner T, Ries RE, Lubman O, Fremont DH, McLellan MD, Payton JE, Westervelt P, DiPersio JF, Link DC, Walter MJ, Graubert TA, Watson M, Baty J, Heath S, Shannon WD, Nagarajan R, Bloomfield CD, Mardis ER, Wilson RK, Ley TJ.

Blood. 2008 May 1;111(9):4797-808. doi: 10.1182/blood-2007-09-113027. Epub 2008 Feb 12.

28.

The effect of compliance on the impact of mass drug administration for elimination of lymphatic filariasis in Egypt.

El-Setouhy M, Abd Elaziz KM, Helmy H, Farid HA, Kamal HA, Ramzy RM, Shannon WD, Weil GJ.

Am J Trop Med Hyg. 2007 Dec;77(6):1069-73.

29.

Addition of vasopressin to norepinephrine as independent predictor of mortality in patients with refractory septic shock: an observational study.

Micek ST, Shah P, Hollands JM, Shah RA, Shannon WD, Kollef MH.

Surg Infect (Larchmt). 2007 Apr;8(2):189-200.

PMID:
17437364
30.

Clinical outcomes of intravenous immune globulin in severe clostridium difficile-associated diarrhea.

Juang P, Skledar SJ, Zgheib NK, Paterson DL, Vergis EN, Shannon WD, Ansani NT, Branch RA.

Am J Infect Control. 2007 Mar;35(2):131-7.

PMID:
17327194
31.

Improving adherence to coronary heart disease secondary prevention medication guidelines at a community hospital.

Bailey TC, Noirot LA, Gage BF, Li X, Shannon WD, Waterman B, Sinha S, Bouselli DA, Reichley RM, Goldberg AC, Dunagan WC.

AMIA Annu Symp Proc. 2006:850.

32.

Pharmacogenetic analysis of paclitaxel transport and metabolism genes in breast cancer.

Marsh S, Somlo G, Li X, Frankel P, King CR, Shannon WD, McLeod HL, Synold TW.

Pharmacogenomics J. 2007 Oct;7(5):362-5. Epub 2007 Jan 16.

PMID:
17224914
33.

A high-resolution map of segmental DNA copy number variation in the mouse genome.

Graubert TA, Cahan P, Edwin D, Selzer RR, Richmond TA, Eis PS, Shannon WD, Li X, McLeod HL, Cheverud JM, Ley TJ.

PLoS Genet. 2007 Jan 5;3(1):e3. Epub 2006 Nov 22.

34.

Effect of yearly mass drug administration with diethylcarbamazine and albendazole on bancroftian filariasis in Egypt: a comprehensive assessment.

Ramzy RM, El Setouhy M, Helmy H, Ahmed ES, Abd Elaziz KM, Farid HA, Shannon WD, Weil GJ.

Lancet. 2006 Mar 25;367(9515):992-9. Erratum in: Lancet. 2006 Jun 17;367(9527):1980.

PMID:
16564361
35.

Expression of drug pathway proteins is independent of tumour type.

Zhang W, Shannon WD, Duncan J, Scheffer GL, Scheper RJ, McLeod HL.

J Pathol. 2006 Jun;209(2):213-9.

PMID:
16508919
36.

A mouse model for developing treatment for secondary liver tumors.

Cai SR, Garbow JR, Culverhouse R, Church RD, Zhang W, Shannon WD, McLeod HL.

Int J Oncol. 2005 Jul;27(1):113-20.

PMID:
15942650
37.

Delirium as detected by the CAM-ICU predicts restraint use among mechanically ventilated medical patients.

Micek ST, Anand NJ, Laible BR, Shannon WD, Kollef MH.

Crit Care Med. 2005 Jun;33(6):1260-5.

PMID:
15942341
38.

Irinotecan pharmacokinetic and pharmacogenomic alterations induced by methylselenocysteine in human head and neck xenograft tumors.

Azrak RG, Yu J, Pendyala L, Smith PF, Cao S, Li X, Shannon WD, Durrani FA, McLeod HL, Rustum YM.

Mol Cancer Ther. 2005 May;4(5):843-54.

39.

Variance in the expression of 5-Fluorouracil pathway genes in colorectal cancer.

Kidd EA, Yu J, Li X, Shannon WD, Watson MA, McLeod HL.

Clin Cancer Res. 2005 Apr 1;11(7):2612-9.

40.

Gene expression profiling of the irinotecan pathway in colorectal cancer.

Yu J, Shannon WD, Watson MA, McLeod HL.

Clin Cancer Res. 2005 Mar 1;11(5):2053-62.

41.

Unfavourable expression of pharmacologic markers in mucinous colorectal cancer.

Glasgow SC, Yu J, Carvalho LP, Shannon WD, Fleshman JW, McLeod HL.

Br J Cancer. 2005 Jan 31;92(2):259-64.

42.

Expression profiling of murine acute promyelocytic leukemia cells reveals multiple model-dependent progression signatures.

Walter MJ, Park JS, Lau SK, Li X, Lane AA, Nagarajan R, Shannon WD, Ley TJ.

Mol Cell Biol. 2004 Dec;24(24):10882-93.

43.

The Ross procedure: long-term clinical and echocardiographic follow-up.

Kouchoukos NT, Masetti P, Nickerson NJ, Castner CF, Shannon WD, Dávila-Román VG.

Ann Thorac Surg. 2004 Sep;78(3):773-81; discussion 773-81.

PMID:
15336990
44.

RNA profiling of cyclooxygenases 1 and 2 in colorectal cancer.

Church RD, Yu J, Fleshman JW, Shannon WD, Govindan R, McLeod HL.

Br J Cancer. 2004 Sep 13;91(6):1015-8.

45.

Genotypes associated with myocardial infarction risk are more common in African Americans than in European Americans.

Lanfear DE, Marsh S, Cresci S, Shannon WD, Spertus JA, McLeod HL.

J Am Coll Cardiol. 2004 Jul 7;44(1):165-7.

46.

Single nucleotide polymorphism profiling across the methotrexate pathway in normal subjects and patients with rheumatoid arthritis.

Ranganathan P, Culverhouse R, Marsh S, Ahluwalia R, Shannon WD, Eisen S, McLeod HL.

Pharmacogenomics. 2004 Jul;5(5):559-69.

PMID:
15212592
47.

Sepsis gene expression profiling: murine splenic compared with hepatic responses determined by using complementary DNA microarrays.

Cobb JP, Laramie JM, Stormo GD, Morrissey JJ, Shannon WD, Qiu Y, Karl IE, Buchman TG, Hotchkiss RS.

Crit Care Med. 2002 Dec;30(12):2711-21.

PMID:
12483063
48.

Mantel statistics to correlate gene expression levels from microarrays with clinical covariates.

Shannon WD, Watson MA, Perry A, Rich K.

Genet Epidemiol. 2002 Jun;23(1):87-96.

PMID:
12112250
49.

Relationship of cytomegalovirus viral load in blood to pneumonitis in lung transplant recipients.

Sanchez JL, Kruger RM, Paranjothi S, Trulock EP, Lynch JP, Hicks C, Shannon WD, Storch GA.

Transplantation. 2001 Aug 27;72(4):733-5.

PMID:
11544440
50.

Gene expression profiling with oligonucleotide microarrays distinguishes World Health Organization grade of oligodendrogliomas.

Watson MA, Perry A, Budhraja V, Hicks C, Shannon WD, Rich KM.

Cancer Res. 2001 Mar 1;61(5):1825-9. Erratum in: Cancer Res. 2005 Oct 1;65(19):9108. Budhjara, V [corrected to Budhraja, V].

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