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Items: 35

1.

Mitochondrial cytochrome oxidase C subunit III (cox3) gene as a sensitive and specific target for molecular detection of Babesia gibsoni infection in dogs.

Betgiri AA, Jadhav SN, Pawde M, Shukla A, Mote C, Pawar PD, Shanmugam D, Kundu K.

Exp Parasitol. 2019 Oct 1:107771. doi: 10.1016/j.exppara.2019.107771. [Epub ahead of print]

PMID:
31585116
2.

Evaluation of Bovine-Derived Collagen Membrane in Oral Surgical Mucosal Defects.

Shanmugam D, Dominic N.

J Maxillofac Oral Surg. 2019 Sep;18(3):466-473. doi: 10.1007/s12663-018-1172-6. Epub 2018 Nov 17.

PMID:
31371892
3.

Demystifying a hexuronic acid ligand that recognizes Toxoplasma gondii and blocks its invasion into host cells.

Subramani B, Shantamurthy CD, Maru P, Belekar MA, Mardhekar S, Shanmugam D, Kikkeri R.

Org Biomol Chem. 2019 May 8;17(18):4535-4542. doi: 10.1039/c9ob00744j.

PMID:
30994681
4.

Erratum for Subramanian et al., "Targeted Phenotypic Screening in Plasmodium falciparum and Toxoplasma gondii Reveals Novel Modes of Action of Medicines for Malaria Venture Malaria Box Molecules".

Subramanian G, Belekar MA, Shukla A, Tong JX, Sinha A, Chu TTT, Kulkarni AS, Preiser PR, Reddy DS, Tan KSW, Shanmugam D, Chandramohanadas R.

mSphere. 2019 Mar 13;4(2). pii: e00159-19. doi: 10.1128/mSphere.00159-19. No abstract available.

5.

Correction: Highly diverged novel subunit composition of apicomplexan F-type ATP synthase identified from Toxoplasma gondii.

Salunke R, Mourier T, Banerjee M, Pain A, Shanmugam D.

PLoS Biol. 2019 Mar 6;17(3):e3000176. doi: 10.1371/journal.pbio.3000176. eCollection 2019 Mar.

6.

Evaluating antimalarial efficacy by tracking glycolysis in Plasmodium falciparum using NMR spectroscopy.

Shivapurkar R, Hingamire T, Kulkarni AS, Rajamohanan PR, Reddy DS, Shanmugam D.

Sci Rep. 2018 Dec 24;8(1):18076. doi: 10.1038/s41598-018-36197-3.

7.

CSGID Solves Structures and Identifies Phenotypes for Five Enzymes in Toxoplasma gondii.

Lykins JD, Filippova EV, Halavaty AS, Minasov G, Zhou Y, Dubrovska I, Flores KJ, Shuvalova LA, Ruan J, El Bissati K, Dovgin S, Roberts CW, Woods S, Moulton JD, Moulton H, McPhillie MJ, Muench SP, Fishwick CWG, Sabini E, Shanmugam D, Roos DS, McLeod R, Anderson WF, Ngô HM.

Front Cell Infect Microbiol. 2018 Oct 5;8:352. doi: 10.3389/fcimb.2018.00352. eCollection 2018.

8.

Glycolysis is important for optimal asexual growth and formation of mature tissue cysts by Toxoplasma gondii.

Shukla A, Olszewski KL, Llinás M, Rommereim LM, Fox BA, Bzik DJ, Xia D, Wastling J, Beiting D, Roos DS, Shanmugam D.

Int J Parasitol. 2018 Oct;48(12):955-968. doi: 10.1016/j.ijpara.2018.05.013. Epub 2018 Aug 31.

PMID:
30176233
9.

Structural insights into the unique inhibitory mechanism of Kunitz type trypsin inhibitor from Cicer arietinum L.

Bendre AD, Suresh CG, Shanmugam D, Ramasamy S.

J Biomol Struct Dyn. 2019 Jul;37(10):2669-2677. doi: 10.1080/07391102.2018.1494633. Epub 2018 Nov 24.

PMID:
30052127
10.

Efforts To Access the Potent Antitrypanosomal Marine Natural Product Janadolide: Synthesis of Des-tert-butyl Janadolide and Its Biological Evaluation.

Athawale PR, Jachak GR, Shukla A, Shanmugam D, Reddy DS.

ACS Omega. 2018 Feb 28;3(2):2383-2389. doi: 10.1021/acsomega.7b01920. Epub 2018 Feb 27.

11.

Highly diverged novel subunit composition of apicomplexan F-type ATP synthase identified from Toxoplasma gondii.

Salunke R, Mourier T, Banerjee M, Pain A, Shanmugam D.

PLoS Biol. 2018 Jul 13;16(7):e2006128. doi: 10.1371/journal.pbio.2006128. eCollection 2018 Jul. Erratum in: PLoS Biol. 2019 Mar 6;17(3):e3000176.

12.

Specific Stereoisomeric Conformations Determine the Drug Potency of Cladosporin Scaffold against Malarial Parasite.

Das P, Babbar P, Malhotra N, Sharma M, Jachak GR, Gonnade RG, Shanmugam D, Harlos K, Yogavel M, Sharma A, Reddy DS.

J Med Chem. 2018 Jul 12;61(13):5664-5678. doi: 10.1021/acs.jmedchem.8b00565. Epub 2018 Jun 4.

PMID:
29779382
13.

Targeted Phenotypic Screening in Plasmodium falciparum and Toxoplasma gondii Reveals Novel Modes of Action of Medicines for Malaria Venture Malaria Box Molecules.

Subramanian G, Belekar MA, Shukla A, Tong JX, Sinha A, Chu TTT, Kulkarni AS, Preiser PR, Reddy DS, Tan KSW, Shanmugam D, Chandramohanadas R.

mSphere. 2018 Jan 17;3(1). pii: e00534-17. doi: 10.1128/mSphere.00534-17. eCollection 2018 Jan-Feb. Erratum in: mSphere. 2019 Mar 13;4(2):.

14.

Adapted ERAS Pathway vs. Standard Care in Patients with Perforated Duodenal Ulcer-a Randomized Controlled Trial.

Mohsina S, Shanmugam D, Sureshkumar S, Kundra P, Mahalakshmy T, Kate V.

J Gastrointest Surg. 2018 Jan;22(1):107-116. doi: 10.1007/s11605-017-3474-2. Epub 2017 Jun 26.

PMID:
28653239
15.

Salmonella typhi Splenic Abscess Following Blunt Abdominal Injury: A Case Report.

Sharavanan P, Shanmugam D, Palraj KK, Antony T, Thayanidhi P.

J Clin Diagn Res. 2016 Jul;10(7):DD01-2. doi: 10.7860/JCDR/2016/19789.8156. Epub 2016 Jul 1.

16.

Molecular Characterisation of nfsA Gene in Nitrofurantoin Resistant Uropathogens.

Shanmugam D, Esak SB, Narayanaswamy A.

J Clin Diagn Res. 2016 Jun;10(6):DC05-9. doi: 10.7860/JCDR/2016/17280.7957. Epub 2016 Jun 1.

17.

Traumatic Pseudoaneurysm of the Inferior Mesenteric Artery Branch: A Rare Cause of Lower GI Bleeding and Treatment with Selective Coil Embolization.

Nagarajan K, Elango S, Ishita L, Shanmugam D.

Cardiovasc Intervent Radiol. 2016 Sep;39(9):1358-60. doi: 10.1007/s00270-016-1338-x. Epub 2016 Apr 5. No abstract available.

PMID:
27048489
18.

Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites.

Woo YH, Ansari H, Otto TD, Klinger CM, Kolisko M, Michálek J, Saxena A, Shanmugam D, Tayyrov A, Veluchamy A, Ali S, Bernal A, del Campo J, Cihlář J, Flegontov P, Gornik SG, Hajdušková E, Horák A, Janouškovec J, Katris NJ, Mast FD, Miranda-Saavedra D, Mourier T, Naeem R, Nair M, Panigrahi AK, Rawlings ND, Padron-Regalado E, Ramaprasad A, Samad N, Tomčala A, Wilkes J, Neafsey DE, Doerig C, Bowler C, Keeling PJ, Roos DS, Dacks JB, Templeton TJ, Waller RF, Lukeš J, Oborník M, Pain A.

Elife. 2015 Jul 15;4:e06974. doi: 10.7554/eLife.06974.

19.

Iron superoxide dismutases in eukaryotic pathogens: new insights from Apicomplexa and Trypanosoma structures.

Phan IQ, Davies DR, Moretti NS, Shanmugam D, Cestari I, Anupama A, Fairman JW, Edwards TE, Stuart K, Schenkman S, Myler PJ.

Acta Crystallogr F Struct Biol Commun. 2015 May;71(Pt 5):615-21. doi: 10.1107/S2053230X15004185. Epub 2015 May 7.

20.

Finding of an unusual ova - Schistosoma mansoni.

Shanmugam D, Kindo AJ, Shanmughanathan S.

Trop Parasitol. 2015 Jan-Jun;5(1):68-9. doi: 10.4103/2229-5070.145595. No abstract available.

21.

Investigation of phosphoproteome in RAGE signaling.

Batkulwar KB, Bansode SB, Patil GV, Godbole RK, Kazi RS, Chinnathambi S, Shanmugam D, Kulkarni MJ.

Proteomics. 2015 Jan;15(2-3):245-59. doi: 10.1002/pmic.201400169. Epub 2014 Dec 17. Review.

PMID:
25315903
22.

Extra nodal diffuse large B cell lymphoma at a rare site: A case report.

Shanmugam D, Prasad NR, Srinivasan K, Basu D.

Indian J Cancer. 2014 Oct-Dec;51(4):475-6. doi: 10.4103/0019-509X.175370. No abstract available.

23.

Metastatic follicular carcinoma of thyroid in maxilla.

Kumar CS, Shanmugam D, Venkatapathy R, Munshi MA.

Dent Res J (Isfahan). 2013 Nov;10(6):817-9.

24.

Modification of submental intubation using oral Ring-Adair-Elwyn tubes in faciomaxillary surgeries: A novel approach.

Raajesh JI, Debendra TK, Shanmugam D, Bhat RR.

Indian J Anaesth. 2013 Jul;57(4):418-9. doi: 10.4103/0019-5049.118513. No abstract available.

25.

Comparative genomics of the apicomplexan parasites Toxoplasma gondii and Neospora caninum: Coccidia differing in host range and transmission strategy.

Reid AJ, Vermont SJ, Cotton JA, Harris D, Hill-Cawthorne GA, Könen-Waisman S, Latham SM, Mourier T, Norton R, Quail MA, Sanders M, Shanmugam D, Sohal A, Wasmuth JD, Brunk B, Grigg ME, Howard JC, Parkinson J, Roos DS, Trees AJ, Berriman M, Pain A, Wastling JM.

PLoS Pathog. 2012;8(3):e1002567. doi: 10.1371/journal.ppat.1002567. Epub 2012 Mar 22.

26.

TDR Targets: a chemogenomics resource for neglected diseases.

Magariños MP, Carmona SJ, Crowther GJ, Ralph SA, Roos DS, Shanmugam D, Van Voorhis WC, Agüero F.

Nucleic Acids Res. 2012 Jan;40(Database issue):D1118-27. doi: 10.1093/nar/gkr1053. Epub 2011 Nov 23.

27.

Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle and prospects for disease control.

Coyne RS, Hannick L, Shanmugam D, Hostetler JB, Brami D, Joardar VS, Johnson J, Radune D, Singh I, Badger JH, Kumar U, Saier M, Wang Y, Cai H, Gu J, Mather MW, Vaidya AB, Wilkes DE, Rajagopalan V, Asai DJ, Pearson CG, Findly RC, Dickerson HW, Wu M, Martens C, Van de Peer Y, Roos DS, Cassidy-Hanley DM, Clark TG.

Genome Biol. 2011 Oct 17;12(10):R100. doi: 10.1186/gb-2011-12-10-r100.

28.

Using OrthoMCL to assign proteins to OrthoMCL-DB groups or to cluster proteomes into new ortholog groups.

Fischer S, Brunk BP, Chen F, Gao X, Harb OS, Iodice JB, Shanmugam D, Roos DS, Stoeckert CJ Jr.

Curr Protoc Bioinformatics. 2011 Sep;Chapter 6:Unit 6.12.1-19. doi: 10.1002/0471250953.bi0612s35.

29.

The search for the missing link: a relic plastid in Perkinsus?

Fernández Robledo JA, Caler E, Matsuzaki M, Keeling PJ, Shanmugam D, Roos DS, Vasta GR.

Int J Parasitol. 2011 Oct;41(12):1217-29. doi: 10.1016/j.ijpara.2011.07.008. Epub 2011 Aug 22. Review.

PMID:
21889509
30.

Crystal structure of Toxoplasma gondii porphobilinogen synthase: insights on octameric structure and porphobilinogen formation.

Jaffe EK, Shanmugam D, Gardberg A, Dieterich S, Sankaran B, Stewart LJ, Myler PJ, Roos DS.

J Biol Chem. 2011 Apr 29;286(17):15298-307. doi: 10.1074/jbc.M111.226225. Epub 2011 Mar 7.

31.

A novel multifunctional oligonucleotide microarray for Toxoplasma gondii.

Bahl A, Davis PH, Behnke M, Dzierszinski F, Jagalur M, Chen F, Shanmugam D, White MW, Kulp D, Roos DS.

BMC Genomics. 2010 Oct 25;11:603. doi: 10.1186/1471-2164-11-603.

32.

Identification of attractive drug targets in neglected-disease pathogens using an in silico approach.

Crowther GJ, Shanmugam D, Carmona SJ, Doyle MA, Hertz-Fowler C, Berriman M, Nwaka S, Ralph SA, Roos DS, Van Voorhis WC, Agüero F.

PLoS Negl Trop Dis. 2010 Aug 24;4(8):e804. doi: 10.1371/journal.pntd.0000804.

33.

Plastid-associated porphobilinogen synthase from Toxoplasma gondii: kinetic and structural properties validate therapeutic potential.

Shanmugam D, Wu B, Ramirez U, Jaffe EK, Roos DS.

J Biol Chem. 2010 Jul 16;285(29):22122-31. doi: 10.1074/jbc.M110.107243. Epub 2010 May 4.

34.

Cutting meat with bone using an ultrahigh pressure abrasive waterjet.

Wang J, Shanmugam DK.

Meat Sci. 2009 Apr;81(4):671-7. doi: 10.1016/j.meatsci.2008.11.010. Epub 2008 Nov 20.

PMID:
20416572
35.

Genomic-scale prioritization of drug targets: the TDR Targets database.

Agüero F, Al-Lazikani B, Aslett M, Berriman M, Buckner FS, Campbell RK, Carmona S, Carruthers IM, Chan AW, Chen F, Crowther GJ, Doyle MA, Hertz-Fowler C, Hopkins AL, McAllister G, Nwaka S, Overington JP, Pain A, Paolini GV, Pieper U, Ralph SA, Riechers A, Roos DS, Sali A, Shanmugam D, Suzuki T, Van Voorhis WC, Verlinde CL.

Nat Rev Drug Discov. 2008 Nov;7(11):900-7. doi: 10.1038/nrd2684. Epub 2008 Oct 17. Review.

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