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Items: 25


EcoFABs: advancing microbiome science through standardized fabricated ecosystems.

Zengler K, Hofmockel K, Baliga NS, Behie SW, Bernstein HC, Brown JB, Dinneny JR, Floge SA, Forry SP, Hess M, Jackson SA, Jansson C, Lindemann SR, Pett-Ridge J, Maranas C, Venturelli OS, Wallenstein MD, Shank EA, Northen TR.

Nat Methods. 2019 Jul;16(7):567-571. doi: 10.1038/s41592-019-0465-0. No abstract available.


Monitoring Bacterial Colonization and Maintenance on Arabidopsis thaliana Roots in a Floating Hydroponic System.

Harris SL, Pelaez CA, Shank EA.

J Vis Exp. 2019 May 28;(147). doi: 10.3791/59517.


A Dual-Species Biofilm with Emergent Mechanical and Protective Properties.

Yannarell SM, Grandchamp GM, Chen SY, Daniels KE, Shank EA.

J Bacteriol. 2019 Aug 22;201(18). pii: e00670-18. doi: 10.1128/JB.00670-18. Print 2019 Sep 15.


Inter-Modular Linkers play a crucial role in governing the biosynthesis of non-ribosomal peptides.

Farag S, Bleich RM, Shank EA, Isayev O, Bowers AA, Tropsha A.

Bioinformatics. 2019 Oct 1;35(19):3584-3591. doi: 10.1093/bioinformatics/btz127.


Considering the Lives of Microbes in Microbial Communities.

Shank EA.

mSystems. 2018 Apr 10;3(2). pii: e00155-17. doi: 10.1128/mSystems.00155-17. eCollection 2018 Mar-Apr.


Cyclic di-AMP Acts as an Extracellular Signal That Impacts Bacillus subtilis Biofilm Formation and Plant Attachment.

Townsley L, Yannarell SM, Huynh TN, Woodward JJ, Shank EA.

MBio. 2018 Mar 27;9(2). pii: e00341-18. doi: 10.1128/mBio.00341-18.


Design of synthetic bacterial communities for predictable plant phenotypes.

Herrera Paredes S, Gao T, Law TF, Finkel OM, Mucyn T, Teixeira PJPL, Salas González I, Feltcher ME, Powers MJ, Shank EA, Jones CD, Jojic V, Dangl JL, Castrillo G.

PLoS Biol. 2018 Feb 20;16(2):e2003962. doi: 10.1371/journal.pbio.2003962. eCollection 2018 Feb.


Large-Scale Bioinformatics Analysis of Bacillus Genomes Uncovers Conserved Roles of Natural Products in Bacterial Physiology.

Grubbs KJ, Bleich RM, Santa Maria KC, Allen SE, Farag S; AgBiome Team, Shank EA, Bowers AA.

mSystems. 2017 Nov 14;2(6). pii: e00040-17. doi: 10.1128/mSystems.00040-17. eCollection 2017 Nov-Dec.


Natural-Product Antibiotics: Cues for Modulating Bacterial Biofilm Formation.

Townsley L, Shank EA.

Trends Microbiol. 2017 Dec;25(12):1016-1026. doi: 10.1016/j.tim.2017.06.003. Epub 2017 Jul 5. Review.


Pirated Siderophores Promote Sporulation in Bacillus subtilis.

Grandchamp GM, Caro L, Shank EA.

Appl Environ Microbiol. 2017 May 1;83(10). pii: e03293-16. doi: 10.1128/AEM.03293-16. Print 2017 May 15.


Profiling the metabolic signals involved in chemical communication between microbes using imaging mass spectrometry.

Stasulli NM, Shank EA.

FEMS Microbiol Rev. 2016 Nov 1;40(6):807-813. doi: 10.1093/femsre/fuw032. Review.


Draft Genome Sequence of Bacillus luciferensis Isolated from Soil.

Townsley L, Caro L, Kelkar H, Shank EA.

Genome Announc. 2016 Oct 20;4(5). pii: e01140-16. doi: 10.1128/genomeA.01140-16.


Deconvolving molecular signatures of interactions between microbial colonies.

Harn YC, Powers MJ, Shank EA, Jojic V.

Bioinformatics. 2015 Jun 15;31(12):i142-50. doi: 10.1093/bioinformatics/btv251.


Inhibition of Cell Differentiation in Bacillus subtilis by Pseudomonas protegens.

Powers MJ, Sanabria-Valentín E, Bowers AA, Shank EA.

J Bacteriol. 2015 Jul;197(13):2129-2138. doi: 10.1128/JB.02535-14. Epub 2015 Mar 30.


Thiopeptide antibiotics stimulate biofilm formation in Bacillus subtilis.

Bleich R, Watrous JD, Dorrestein PC, Bowers AA, Shank EA.

Proc Natl Acad Sci U S A. 2015 Mar 10;112(10):3086-91. doi: 10.1073/pnas.1414272112. Epub 2015 Feb 23.


Using coculture to detect chemically mediated interspecies interactions.

Shank EA.

J Vis Exp. 2013 Oct 31;(80):e50863. doi: 10.3791/50863.


MS/MS networking guided analysis of molecule and gene cluster families.

Nguyen DD, Wu CH, Moree WJ, Lamsa A, Medema MH, Zhao X, Gavilan RG, Aparicio M, Atencio L, Jackson C, Ballesteros J, Sanchez J, Watrous JD, Phelan VV, van de Wiel C, Kersten RD, Mehnaz S, De Mot R, Shank EA, Charusanti P, Nagarajan H, Duggan BM, Moore BS, Bandeira N, Palsson BØ, Pogliano K, Gutiérrez M, Dorrestein PC.

Proc Natl Acad Sci U S A. 2013 Jul 9;110(28):E2611-20. doi: 10.1073/pnas.1303471110. Epub 2013 Jun 24.


Interspecies interactions that result in Bacillus subtilis forming biofilms are mediated mainly by members of its own genus.

Shank EA, Klepac-Ceraj V, Collado-Torres L, Powers GE, Losick R, Kolter R.

Proc Natl Acad Sci U S A. 2011 Nov 29;108(48):E1236-43. doi: 10.1073/pnas.1103630108. Epub 2011 Nov 10.


Extracellular signaling and multicellularity in Bacillus subtilis.

Shank EA, Kolter R.

Curr Opin Microbiol. 2011 Dec;14(6):741-7. doi: 10.1016/j.mib.2011.09.016. Epub 2011 Oct 23. Review.


DNA molecular handles for single-molecule protein-folding studies by optical tweezers.

Cecconi C, Shank EA, Marqusee S, Bustamante C.

Methods Mol Biol. 2011;749:255-71. doi: 10.1007/978-1-61779-142-0_18.


The folding cooperativity of a protein is controlled by its chain topology.

Shank EA, Cecconi C, Dill JW, Marqusee S, Bustamante C.

Nature. 2010 Jun 3;465(7298):637-40. doi: 10.1038/nature09021. Epub 2010 May 23.


New developments in microbial interspecies signaling.

Shank EA, Kolter R.

Curr Opin Microbiol. 2009 Apr;12(2):205-14. doi: 10.1016/j.mib.2009.01.003. Epub 2009 Feb 27. Review.


Protein-DNA chimeras for single molecule mechanical folding studies with the optical tweezers.

Cecconi C, Shank EA, Dahlquist FW, Marqusee S, Bustamante C.

Eur Biophys J. 2008 Jul;37(6):729-38. doi: 10.1007/s00249-007-0247-y. Epub 2008 Jan 9.


Exploring subdomain cooperativity in T4 lysozyme I: structural and energetic studies of a circular permutant and protein fragment.

Cellitti J, Llinas M, Echols N, Shank EA, Gillespie B, Kwon E, Crowder SM, Dahlquist FW, Alber T, Marqusee S.

Protein Sci. 2007 May;16(5):842-51. Epub 2007 Mar 30.


Direct observation of the three-state folding of a single protein molecule.

Cecconi C, Shank EA, Bustamante C, Marqusee S.

Science. 2005 Sep 23;309(5743):2057-60.

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