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Items: 1 to 50 of 566

1.

Translating the gut microbiome: ready for the clinic?

Lynch SV, Ng SC, Shanahan F, Tilg H.

Nat Rev Gastroenterol Hepatol. 2019 Sep 27. doi: 10.1038/s41575-019-0204-0. [Epub ahead of print] Review.

PMID:
31562390
2.

Host Microbiota Regulates Central Nervous System Serotonin Receptor 2C Editing in Rodents.

van de Wouw M, Stilling RM, Peterson VL, Ryan FJ, Hoban AE, Shanahan F, Clarke G, Claesson MJ, Dinan TG, Cryan JF, Schellekens H.

ACS Chem Neurosci. 2019 Sep 18;10(9):3953-3960. doi: 10.1021/acschemneuro.9b00414. Epub 2019 Aug 19.

PMID:
31415146
3.

Gut microbiota alterations associated with reduced bone mineral density in older adults.

Das M, Cronin O, Keohane DM, Cormac EM, Nugent H, Nugent M, Molloy C, O'Toole PW, Shanahan F, Molloy MG, Jeffery IB.

Rheumatology (Oxford). 2019 Aug 4. pii: kez302. doi: 10.1093/rheumatology/kez302. [Epub ahead of print]

PMID:
31378815
4.

Infographic. Athlete health and performance: no guts no glory.

Keohane DM, Cronin O, O'Sullivan O, Shanahan F, Molloy M.

Br J Sports Med. 2019 Aug 1. pii: bjsports-2019-100973. doi: 10.1136/bjsports-2019-100973. [Epub ahead of print] No abstract available.

PMID:
31371340
5.

Faecal Microbiota Transplantation (FMT) - classical bedside-to-bench clinical research.

Murphy CL, Zulquernain SA, Shanahan F.

QJM. 2019 Jul 11. pii: hcz181. doi: 10.1093/qjmed/hcz181. [Epub ahead of print] No abstract available.

PMID:
31297516
6.

Friendship in Medicine - The Corrigan Club considers its demise.

Shanahan F.

QJM. 2019 Jul 3. pii: hcz168. doi: 10.1093/qjmed/hcz168. [Epub ahead of print] No abstract available.

PMID:
31268536
7.

Publisher Correction: Language, numeracy and logic in microbiome science.

Shanahan F, Hill C.

Nat Rev Gastroenterol Hepatol. 2019 Jul;16(7):448. doi: 10.1038/s41575-019-0170-6.

PMID:
31189942
8.

Language, numeracy and logic in microbiome science.

Shanahan F, Hill C.

Nat Rev Gastroenterol Hepatol. 2019 Jul;16(7):387-388. doi: 10.1038/s41575-019-0163-5. Review. No abstract available. Erratum in: Nat Rev Gastroenterol Hepatol. 2019 Jun 12;:.

PMID:
31168062
9.

The effect of a probiotic blend on gastrointestinal symptoms in constipated patients: a double blind, randomised, placebo controlled 2-week trial.

Airaksinen K, Yeung N, Lyra A, Lahtinen SJ, Huttunen T, Shanahan F, Ouwehand AC.

Benef Microbes. 2019 May 27:1-12. doi: 10.3920/BM2018.0163. [Epub ahead of print]

PMID:
31131616
10.

Bifidobacteriumbreve Bif195 Protects Against Small-Intestinal Damage Caused by Acetylsalicylic Acid in Healthy Volunteers.

Mortensen B, Murphy C, O'Grady J, Lucey M, Elsafi G, Barry L, Westphal V, Wellejus A, Lukjancenko O, Eklund AC, Nielsen HB, Baker A, Damholt A, van Hylckama Vlieg JET, Shanahan F, Buckley M.

Gastroenterology. 2019 Sep;157(3):637-646.e4. doi: 10.1053/j.gastro.2019.05.008. Epub 2019 May 13.

11.

Four men in a boat: Ultra-endurance exercise alters the gut microbiome.

Keohane DM, Woods T, O'Connor P, Underwood S, Cronin O, Whiston R, O'Sullivan O, Cotter P, Shanahan F, Molloy MGM.

J Sci Med Sport. 2019 Sep;22(9):1059-1064. doi: 10.1016/j.jsams.2019.04.004. Epub 2019 Apr 18.

PMID:
31053425
12.

Letter: dietary fibre benefits for the oesophagus-physical rather than metabolic action? Authors' reply.

O'Grady J, Shanahan F.

Aliment Pharmacol Ther. 2019 May;49(10):1368-1369. doi: 10.1111/apt.15238. No abstract available.

PMID:
31016771
13.

The Gut Microbiota in Causation, Detection, and Treatment of Cancer.

Murphy CL, OʼToole PW, Shanahan F.

Am J Gastroenterol. 2019 Jul;114(7):1036-1042. doi: 10.14309/ajg.0000000000000075.

PMID:
30848738
14.

Moderate-intensity aerobic and resistance exercise is safe and favorably influences body composition in patients with quiescent Inflammatory Bowel Disease: a randomized controlled cross-over trial.

Cronin O, Barton W, Moran C, Sheehan D, Whiston R, Nugent H, McCarthy Y, Molloy CB, O'Sullivan O, Cotter PD, Molloy MG, Shanahan F.

BMC Gastroenterol. 2019 Feb 12;19(1):29. doi: 10.1186/s12876-019-0952-x.

15.

Review article: dietary fibre in the era of microbiome science.

O'Grady J, O'Connor EM, Shanahan F.

Aliment Pharmacol Ther. 2019 Mar;49(5):506-515. doi: 10.1111/apt.15129. Review.

PMID:
30746776
16.

Low-dose CT imaging of the acute abdomen using model-based iterative reconstruction: a prospective study.

Moloney F, James K, Twomey M, Ryan D, Grey TM, Downes A, Kavanagh RG, Moore N, Murphy MJ, Bye J, Carey BW, McSweeney SE, Deasy C, Andrews E, Shanahan F, Maher MM, O'Connor OJ.

Emerg Radiol. 2019 Apr;26(2):169-177. doi: 10.1007/s10140-018-1658-z. Epub 2018 Nov 17.

PMID:
30448900
17.

Dietary Fiber and Gastrointestinal Disease: an Evolving Story.

O'Grady J, Shanahan F.

Curr Gastroenterol Rep. 2018 Nov 8;20(12):59. doi: 10.1007/s11894-018-0667-0. Review. No abstract available.

PMID:
30406857
18.

A Bifidobacterial pilus-associated protein promotes colonic epithelial proliferation.

O'Connell Motherway M, Houston A, O'Callaghan G, Reunanen J, O'Brien F, O'Driscoll T, Casey PG, de Vos WM, van Sinderen D, Shanahan F.

Mol Microbiol. 2019 Jan;111(1):287-301. doi: 10.1111/mmi.14155. Epub 2018 Dec 2.

PMID:
30352131
19.

Pharmacological Induction of RAS-GTP Confers RAF Inhibitor Sensitivity in KRAS Mutant Tumors.

Yen I, Shanahan F, Merchant M, Orr C, Hunsaker T, Durk M, La H, Zhang X, Martin SE, Lin E, Chan J, Yu Y, Amin D, Neve RM, Gustafson A, Venkatanarayan A, Foster SA, Rudolph J, Klijn C, Malek S.

Cancer Cell. 2018 Oct 8;34(4):611-625.e7. doi: 10.1016/j.ccell.2018.09.002.

20.

Changes in microbiota composition, bile and fatty acid metabolism, in successful faecal microbiota transplantation for Clostridioides difficile infection.

Brown JR, Flemer B, Joyce SA, Zulquernain A, Sheehan D, Shanahan F, O'Toole PW.

BMC Gastroenterol. 2018 Aug 28;18(1):131. doi: 10.1186/s12876-018-0860-5.

21.

The Use of a Mini-Bioreactor Fermentation System as a Reproducible, High-Throughput ex vivo Batch Model of the Distal Colon.

O'Donnell MM, Rea MC, Shanahan F, Ross RP.

Front Microbiol. 2018 Aug 10;9:1844. doi: 10.3389/fmicb.2018.01844. eCollection 2018.

22.

Carbohydrate Syntrophy enhances the establishment of Bifidobacterium breve UCC2003 in the neonatal gut.

O'Connell Motherway M, O'Brien F, O'Driscoll T, Casey PG, Shanahan F, van Sinderen D.

Sci Rep. 2018 Jul 13;8(1):10627. doi: 10.1038/s41598-018-29034-0.

23.

Social interaction-induced activation of RNA splicing in the amygdala of microbiome-deficient mice.

Stilling RM, Moloney GM, Ryan FJ, Hoban AE, Bastiaanssen TF, Shanahan F, Clarke G, Claesson MJ, Dinan TG, Cryan JF.

Elife. 2018 May 29;7. pii: e33070. doi: 10.7554/eLife.33070.

24.

A Prospective Metagenomic and Metabolomic Analysis of the Impact of Exercise and/or Whey Protein Supplementation on the Gut Microbiome of Sedentary Adults.

Cronin O, Barton W, Skuse P, Penney NC, Garcia-Perez I, Murphy EF, Woods T, Nugent H, Fanning A, Melgar S, Falvey EC, Holmes E, Cotter PD, O'Sullivan O, Molloy MG, Shanahan F.

mSystems. 2018 Apr 24;3(3). pii: e00044-18. doi: 10.1128/mSystems.00044-18. eCollection 2018 May-Jun.

25.

Publisher Correction: Enterotypes in the landscape of gut microbial community composition.

Costea PI, Hildebrand F, Arumugam M, Bäckhed F, Blaser MJ, Bushman FD, de Vos WM, Ehrlich SD, Fraser CM, Hattori M, Huttenhower C, Jeffery IB, Knights D, Lewis JD, Ley RE, Ochman H, O'Toole PW, Quince C, Relman DA, Shanahan F, Sunagawa S, Wang J, Weinstock GM, Wu GD, Zeller G, Zhao L, Raes J, Knight R, Bork P.

Nat Microbiol. 2018 Mar;3(3):388. doi: 10.1038/s41564-018-0114-x.

PMID:
29440750
26.

Tumour-associated and non-tumour-associated microbiota: Addendum.

Flemer B, Herlihy M, O'Riordain M, Shanahan F, O'Toole PW.

Gut Microbes. 2018 Jul 4;9(4):369-373. doi: 10.1080/19490976.2018.1435246. Epub 2018 Apr 13.

27.

How to swim with sharks: a perspective on Voltaire Cousteau's primer.

Shanahan F.

QJM. 2019 Jan 1;112(1):61-62. doi: 10.1093/qjmed/hcy027. No abstract available.

PMID:
29415122
28.

Determinants of Reduced Genetic Capacity for Butyrate Synthesis by the Gut Microbiome in Crohn's Disease and Ulcerative Colitis.

Laserna-Mendieta EJ, Clooney AG, Carretero-Gomez JF, Moran C, Sheehan D, Nolan JA, Hill C, Gahan CGM, Joyce SA, Shanahan F, Claesson MJ.

J Crohns Colitis. 2018 Jan 24;12(2):204-216. doi: 10.1093/ecco-jcc/jjx137.

PMID:
29373727
29.

Inclusion of the Mesentery in Ileocolic Resection for Crohn's Disease is Associated With Reduced Surgical Recurrence.

Coffey CJ, Kiernan MG, Sahebally SM, Jarrar A, Burke JP, Kiely PA, Shen B, Waldron D, Peirce C, Moloney M, Skelly M, Tibbitts P, Hidayat H, Faul PN, Healy V, O'Leary PD, Walsh LG, Dockery P, O'Connell RP, Martin ST, Shanahan F, Fiocchi C, Dunne CP.

J Crohns Colitis. 2018 Nov 9;12(10):1139-1150. doi: 10.1093/ecco-jcc/jjx187.

30.

Enterotypes in the landscape of gut microbial community composition.

Costea PI, Hildebrand F, Arumugam M, Bäckhed F, Blaser MJ, Bushman FD, de Vos WM, Ehrlich SD, Fraser CM, Hattori M, Huttenhower C, Jeffery IB, Knights D, Lewis JD, Ley RE, Ochman H, O'Toole PW, Quince C, Relman DA, Shanahan F, Sunagawa S, Wang J, Weinstock GM, Wu GD, Zeller G, Zhao L, Raes J, Knight R, Bork P.

Nat Microbiol. 2018 Jan;3(1):8-16. doi: 10.1038/s41564-017-0072-8. Epub 2017 Dec 18. Review. Erratum in: Nat Microbiol. 2018 Feb 13;:.

31.

CORK Study in Cystic Fibrosis: Sustained Improvements in Ultra-Low-Dose Chest CT Scores After CFTR Modulation With Ivacaftor.

Ronan NJ, Einarsson GG, Twomey M, Mooney D, Mullane D, NiChroinin M, O'Callaghan G, Shanahan F, Murphy DM, O'Connor OJ, Shortt CA, Tunney MM, Eustace JA, Maher MM, Elborn JS, Plant BJ.

Chest. 2018 Feb;153(2):395-403. doi: 10.1016/j.chest.2017.10.005. Epub 2017 Oct 14.

PMID:
29037527
32.

The oral microbiota in colorectal cancer is distinctive and predictive.

Flemer B, Warren RD, Barrett MP, Cisek K, Das A, Jeffery IB, Hurley E, O'Riordain M, Shanahan F, O'Toole PW.

Gut. 2018 Aug;67(8):1454-1463. doi: 10.1136/gutjnl-2017-314814. Epub 2017 Oct 7.

33.

Microbial regulation of microRNA expression in the amygdala and prefrontal cortex.

Hoban AE, Stilling RM, M Moloney G, Moloney RD, Shanahan F, Dinan TG, Cryan JF, Clarke G.

Microbiome. 2017 Aug 25;5(1):102. doi: 10.1186/s40168-017-0321-3.

34.

Editorial: probiotics in inflammatory bowel disease-wrong organisms, wrong disease, or flawed concepts?

Shanahan F.

Aliment Pharmacol Ther. 2017 Sep;46(6):632-633. doi: 10.1111/apt.14230. No abstract available.

35.

Project DRIVE: A Compendium of Cancer Dependencies and Synthetic Lethal Relationships Uncovered by Large-Scale, Deep RNAi Screening.

McDonald ER 3rd, de Weck A, Schlabach MR, Billy E, Mavrakis KJ, Hoffman GR, Belur D, Castelletti D, Frias E, Gampa K, Golji J, Kao I, Li L, Megel P, Perkins TA, Ramadan N, Ruddy DA, Silver SJ, Sovath S, Stump M, Weber O, Widmer R, Yu J, Yu K, Yue Y, Abramowski D, Ackley E, Barrett R, Berger J, Bernard JL, Billig R, Brachmann SM, Buxton F, Caothien R, Caushi JX, Chung FS, Cortés-Cros M, deBeaumont RS, Delaunay C, Desplat A, Duong W, Dwoske DA, Eldridge RS, Farsidjani A, Feng F, Feng J, Flemming D, Forrester W, Galli GG, Gao Z, Gauter F, Gibaja V, Haas K, Hattenberger M, Hood T, Hurov KE, Jagani Z, Jenal M, Johnson JA, Jones MD, Kapoor A, Korn J, Liu J, Liu Q, Liu S, Liu Y, Loo AT, Macchi KJ, Martin T, McAllister G, Meyer A, Mollé S, Pagliarini RA, Phadke T, Repko B, Schouwey T, Shanahan F, Shen Q, Stamm C, Stephan C, Stucke VM, Tiedt R, Varadarajan M, Venkatesan K, Vitari AC, Wallroth M, Weiler J, Zhang J, Mickanin C, Myer VE, Porter JA, Lai A, Bitter H, Lees E, Keen N, Kauffmann A, Stegmeier F, Hofmann F, Schmelzle T, Sellers WR.

Cell. 2017 Jul 27;170(3):577-592.e10. doi: 10.1016/j.cell.2017.07.005.

36.

A pilot study demonstrating the altered gut microbiota functionality in stable adults with Cystic Fibrosis.

Fouhy F, Ronan NJ, O'Sullivan O, McCarthy Y, Walsh AM, Murphy DM, Daly M, Flanagan ET, Fleming C, McCarthy M, Shortt C, Eustace JA, Shanahan F, Rea MC, Ross RP, Stanton C, Plant BJ.

Sci Rep. 2017 Jul 27;7(1):6685. doi: 10.1038/s41598-017-06880-y.

37.

Microbial regulation of hippocampal miRNA expression: Implications for transcription of kynurenine pathway enzymes.

Moloney GM, O'Leary OF, Salvo-Romero E, Desbonnet L, Shanahan F, Dinan TG, Clarke G, Cryan JF.

Behav Brain Res. 2017 Sep 15;334:50-54. doi: 10.1016/j.bbr.2017.07.026. Epub 2017 Jul 20.

PMID:
28736331
38.

Feeding the microbiota: transducer of nutrient signals for the host.

Shanahan F, van Sinderen D, O'Toole PW, Stanton C.

Gut. 2017 Sep;66(9):1709-1717. doi: 10.1136/gutjnl-2017-313872. Epub 2017 Jun 29. Review.

PMID:
28663354
39.

Microbiota regulates visceral pain in the mouse.

Luczynski P, Tramullas M, Viola M, Shanahan F, Clarke G, O'Mahony S, Dinan TG, Cryan JF.

Elife. 2017 Jun 20;6. pii: e25887. doi: 10.7554/eLife.25887.

40.

The microbiome regulates amygdala-dependent fear recall.

Hoban AE, Stilling RM, Moloney G, Shanahan F, Dinan TG, Clarke G, Cryan JF.

Mol Psychiatry. 2018 May;23(5):1134-1144. doi: 10.1038/mp.2017.100. Epub 2017 May 16.

41.

The effect of exercise interventions on inflammatory biomarkers in healthy, physically inactive subjects: a systematic review.

Cronin O, Keohane DM, Molloy MG, Shanahan F.

QJM. 2017 Oct 1;110(10):629-637. doi: 10.1093/qjmed/hcx091. Review.

PMID:
28472518
42.

Erratum to: The altered gut microbiota in adults with cystic fibrosis.

Burke DG, Fouhy F, Harrison MJ, Rea MC, Cotter PD, O'Sullivan O, Stanton C, Hill C, Shanahan F, Plant BJ, Ross RP.

BMC Microbiol. 2017 Apr 27;17(1):102. doi: 10.1186/s12866-017-1006-6. No abstract available.

43.

The microbiome of professional athletes differs from that of more sedentary subjects in composition and particularly at the functional metabolic level.

Barton W, Penney NC, Cronin O, Garcia-Perez I, Molloy MG, Holmes E, Shanahan F, Cotter PD, O'Sullivan O.

Gut. 2018 Apr;67(4):625-633. doi: 10.1136/gutjnl-2016-313627. Epub 2017 Mar 30.

44.

GREB1 genetic variants are associated with bone mineral density in Caucasians.

Hegarty KG, Drummond FJ, Daly M, Shanahan F, Molloy MG.

J Bone Miner Metab. 2018 Mar;36(2):189-199. doi: 10.1007/s00774-017-0823-x. Epub 2017 Mar 14.

PMID:
28293781
45.

Microbiome and metabolome modifying effects of several cardiovascular disease interventions in apo-E-/- mice.

Ryan PM, London LE, Bjorndahl TC, Mandal R, Murphy K, Fitzgerald GF, Shanahan F, Ross RP, Wishart DS, Caplice NM, Stanton C.

Microbiome. 2017 Mar 13;5(1):30. doi: 10.1186/s40168-017-0246-x.

46.

The altered gut microbiota in adults with cystic fibrosis.

Burke DG, Fouhy F, Harrison MJ, Rea MC, Cotter PD, O'Sullivan O, Stanton C, Hill C, Shanahan F, Plant BJ, Ross RP.

BMC Microbiol. 2017 Mar 9;17(1):58. doi: 10.1186/s12866-017-0968-8. Erratum in: BMC Microbiol. 2017 Apr 27;17 (1):102.

47.

Bifidobacterium breve with α-linolenic acid alters the composition, distribution and transcription factor activity associated with metabolism and absorption of fat.

Patterson E, Wall R, Lisai S, Ross RP, Dinan TG, Cryan JF, Fitzgerald GF, Banni S, Quigley EM, Shanahan F, Stanton C.

Sci Rep. 2017 Mar 7;7:43300. doi: 10.1038/srep43300.

48.

The influence of rosuvastatin on the gastrointestinal microbiota and host gene expression profiles.

Nolan JA, Skuse P, Govindarajan K, Patterson E, Konstantinidou N, Casey PG, MacSharry J, Shanahan F, Stanton C, Hill C, Cotter PD, Joyce SA, Gahan CGM.

Am J Physiol Gastrointest Liver Physiol. 2017 May 1;312(5):G488-G497. doi: 10.1152/ajpgi.00149.2016. Epub 2017 Feb 16.

49.

The Gut Microbiota in Inflammatory Bowel Disease.

Sheehan D, Shanahan F.

Gastroenterol Clin North Am. 2017 Mar;46(1):143-154. doi: 10.1016/j.gtc.2016.09.011. Epub 2017 Jan 4. Review.

PMID:
28164847
50.

Gut microbiota: implications for sports and exercise medicine.

Cronin O, O'Sullivan O, Barton W, Cotter PD, Molloy MG, Shanahan F.

Br J Sports Med. 2017 May;51(9):700-701. doi: 10.1136/bjsports-2016-097225. Epub 2017 Jan 11. No abstract available.

PMID:
28077354

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