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Items: 1 to 50 of 590

1.

PROMO: an interactive tool for analyzing clinically-labeled multi-omic cancer datasets.

Netanely D, Stern N, Laufer I, Shamir R.

BMC Bioinformatics. 2019 Dec 26;20(1):732. doi: 10.1186/s12859-019-3142-5.

2.

Using the kinetics of C-reactive protein response to improve the differential diagnosis between acute bacterial and viral infections.

Coster D, Wasserman A, Fisher E, Rogowski O, Zeltser D, Shapira I, Bernstein D, Meilik A, Raykhshtat E, Halpern P, Berliner S, Shenhar-Tsarfaty S, Shamir R.

Infection. 2019 Dec 24. doi: 10.1007/s15010-019-01383-6. [Epub ahead of print]

PMID:
31873850
3.

High rates of serology testing for coeliac disease, and low rates of endoscopy in serologically positive children and adults in Israel: lessons from a large real-world database.

Guz-Mark A, Feldman BS, Ghilai A, Hoshen M, Cohen HA, Shkalim Zemer V, Assa A, Zevit N, Shamir R.

Eur J Gastroenterol Hepatol. 2019 Dec 9. doi: 10.1097/MEG.0000000000001613. [Epub ahead of print]

PMID:
31834051
4.

Comorbidities in adolescents with inflammatory bowel disease: findings from a population-based cohort study.

Ghersin I, Khateeb N, Katz LH, Daher S, Shamir R, Assa A.

Pediatr Res. 2019 Dec 4. doi: 10.1038/s41390-019-0702-3. [Epub ahead of print]

PMID:
31801156
5.

Combination Therapy of Adalimumab With an Immunomodulator Is Not More Effective Than Adalimumab Monotherapy in Children With Crohn's Disease: A Post Hoc Analysis of the PAILOT Randomized Controlled Trial.

Matar M, Shamir R, Turner D, Broide E, Weiss B, Ledder O, Guz-Mark A, Rinawi F, Cohen S, Topf-Olivestone C, Shaoul R, Yerushalmi B, Ben-Horin S, Assa A.

Inflamm Bowel Dis. 2019 Dec 3. pii: izz294. doi: 10.1093/ibd/izz294. [Epub ahead of print]

PMID:
31793630
6.

European Society for Paediatric Gastroenterology, Hepatology and Nutrition Distinguished Service Award 2019 to Professor Stefano Guandalini.

Troncone R, Shamir R.

J Pediatr Gastroenterol Nutr. 2019 Dec;69(6):631-632. doi: 10.1097/MPG.0000000000002510. No abstract available.

PMID:
31764437
7.

PRODIGY: personalized prioritization of driver genes.

Dinstag G, Shamir R.

Bioinformatics. 2019 Nov 4. pii: btz815. doi: 10.1093/bioinformatics/btz815. [Epub ahead of print]

PMID:
31681944
8.

Therapeutic Drug Monitoring Increases Drug Retention of Anti-Tumor Necrosis Factor Alpha Agents in Pediatric Patients With Crohn's Disease.

Gofin Y, Matar M, Shamir R, Assa A.

Inflamm Bowel Dis. 2019 Oct 21. pii: izz257. doi: 10.1093/ibd/izz257. [Epub ahead of print]

PMID:
31634402
9.

Unravelling plasmidome distribution and interaction with its hosting microbiome.

Brown Kav A, Rozov R, Bogumil D, Sørensen SJ, Hansen LH, Benhar I, Halperin E, Shamir R, Mizrahi I.

Environ Microbiol. 2020 Jan;22(1):32-44. doi: 10.1111/1462-2920.14813. Epub 2019 Dec 15.

PMID:
31602783
10.

European Society Paediatric Gastroenterology, Hepatology and Nutrition Guidelines for Diagnosing Coeliac Disease 2020.

Husby S, Koletzko S, Korponay-Szabó I, Kurppa K, Mearin ML, Ribes-Koninckx C, Shamir R, Troncone R, Auricchio R, Castillejo G, Christensen R, Dolinsek J, Gillett P, Hróbjartsson A, Koltai T, Maki M, Nielsen SM, Popp A, Størdal K, Werkstetter K, Wessels M.

J Pediatr Gastroenterol Nutr. 2020 Jan;70(1):141-156. doi: 10.1097/MPG.0000000000002497.

PMID:
31568151
11.

ESPGHAN Distinguished Service Award 2019 to Professor Stefano Guandalini.

Troncone R, Shamir R.

J Pediatr Gastroenterol Nutr. 2019 Sep 20. doi: 10.1097/MPG.0000000000002510. [Epub ahead of print] No abstract available.

PMID:
31567891
12.

Prevalence and Predictors of Growth Impairment and Short Stature in Pediatric-Onset Inflammatory Bowel Disease.

Rinawi F, Assa A, Almagor T, Ziv-Baran T, Shamir R.

Digestion. 2019 Sep 13:1-9. doi: 10.1159/000501924. [Epub ahead of print]

PMID:
31522182
13.

Inaccuracy of the log-rank approximation in cancer data analysis.

Rappoport N, Shamir R.

Mol Syst Biol. 2019 Aug;15(8):e8754. doi: 10.15252/msb.20188754.

14.

Letter: Lactobacillus rhamnosus GG offers no benefit over placebo in children with acute gastroenteritis. Authors' reply.

Szajewska H, Kołodziej M, Shamir R.

Aliment Pharmacol Ther. 2019 Sep;50(5):622-623. doi: 10.1111/apt.15431. No abstract available.

PMID:
31414543
15.

Personalized prediction of adverse heart and kidney events using baseline and longitudinal data from SPRINT and ACCORD.

Dinstag G, Amar D, Ingelsson E, Ashley E, Shamir R.

PLoS One. 2019 Aug 8;14(8):e0219728. doi: 10.1371/journal.pone.0219728. eCollection 2019.

16.

Micronutrient Deficiencies in Children With Inflammatory Bowel Diseases.

Ehrlich S, Mark AG, Rinawi F, Shamir R, Assa A.

Nutr Clin Pract. 2019 Jul 25. doi: 10.1002/ncp.10373. [Epub ahead of print]

PMID:
31342601
17.

Initial Development and Validation of a Transition Readiness Scale for Adolescents with Inflammatory Bowel Disease.

Hammerman O, Bayatra A, Turner D, Levine A, Shamir R, Assa A, Wilschanski M, Bachner YG, Israeli E.

Gastroenterol Res Pract. 2019 Jun 18;2019:5062105. doi: 10.1155/2019/5062105. eCollection 2019.

18.

Sex, Ethnicity, and Socioeconomic Status Affect on Israeli Pediatric Lipid Testing Despite Equality in National Healthcare Services.

Interator H, Brener A, Hoshen M, Safra I, Balicer R, Leshno M, Shamir R, Lebenthal Y.

Isr Med Assoc J. 2019 Jun;21(6):369-375.

19.

Noncoding deletions reveal a gene that is critical for intestinal function.

Oz-Levi D, Olender T, Bar-Joseph I, Zhu Y, Marek-Yagel D, Barozzi I, Osterwalder M, Alkelai A, Ruzzo EK, Han Y, Vos ESM, Reznik-Wolf H, Hartman C, Shamir R, Weiss B, Shapiro R, Pode-Shakked B, Tatarskyy P, Milgrom R, Schvimer M, Barshack I, Imai DM, Coleman-Derr D, Dickel DE, Nord AS, Afzal V, van Bueren KL, Barnes RM, Black BL, Mayhew CN, Kuhar MF, Pitstick A, Tekman M, Stanescu HC, Wells JM, Kleta R, de Laat W, Goldstein DB, Pras E, Visel A, Lancet D, Anikster Y, Pennacchio LA.

Nature. 2019 Jul;571(7763):107-111. doi: 10.1038/s41586-019-1312-2. Epub 2019 Jun 19.

20.

Proactive Monitoring of Adalimumab Trough Concentration Associated With Increased Clinical Remission in Children With Crohn's Disease Compared With Reactive Monitoring.

Assa A, Matar M, Turner D, Broide E, Weiss B, Ledder O, Guz-Mark A, Rinawi F, Cohen S, Topf-Olivestone C, Shaoul R, Yerushalmi B, Shamir R.

Gastroenterology. 2019 Oct;157(4):985-996.e2. doi: 10.1053/j.gastro.2019.06.003. Epub 2019 Jun 10.

PMID:
31194979
21.

2019 ISCB Overton Prize: Christophe Dessimoz.

Kovats D, Shamir R, Fogg C.

F1000Res. 2019 May 23;8. pii: ISCB Comm J-722. doi: 10.12688/f1000research.19220.1. eCollection 2019.

22.

2019 ISCB Innovator Award recognizes William Stafford Noble.

Kovats D, Shamir R, Fogg C.

F1000Res. 2019 May 23;8. pii: ISCB Comm J-723. doi: 10.12688/f1000research.19221.1. eCollection 2019.

23.

2019 Outstanding Contributions to ISCB awarded to Barb Bryant.

Kovats D, Shamir R, Fogg C.

F1000Res. 2019 May 23;8. pii: ISCB Comm J-720. doi: 10.12688/f1000research.19218.1. eCollection 2019.

24.

Bonnie Berger named ISCB 2019 ISCB Accomplishments by a Senior Scientist Award recipient.

Kovats D, Shamir R, Fogg C.

F1000Res. 2019 May 23;8. pii: ISCB Comm J-721. doi: 10.12688/f1000research.19219.1. eCollection 2019.

25.

The EXPANDER Integrated Platform for Transcriptome Analysis.

Hait TA, Maron-Katz A, Sagir D, Amar D, Ulitsky I, Linhart C, Tanay A, Sharan R, Shiloh Y, Elkon R, Shamir R.

J Mol Biol. 2019 Jun 14;431(13):2398-2406. doi: 10.1016/j.jmb.2019.05.013. Epub 2019 May 14.

26.

Endoscopic Findings in Children with Isolated Lower Gastrointestinal Bleeding.

Silbermintz A, Matar M, Assa A, Zevit N, Glassberg YM, Shamir R.

Clin Endosc. 2019 May;52(3):258-261. doi: 10.5946/ce.2018.046. Epub 2019 May 14.

27.

Systematic review with meta-analysis: Lactobacillus rhamnosus GG for treating acute gastroenteritis in children - a 2019 update.

Szajewska H, Kołodziej M, Gieruszczak-Białek D, Skórka A, Ruszczyński M, Shamir R.

Aliment Pharmacol Ther. 2019 Jun;49(11):1376-1384. doi: 10.1111/apt.15267. Epub 2019 Apr 25. Review.

PMID:
31025399
28.

Rising prevalence of celiac disease is not universal and repeated testing is needed for population screening.

Levinson-Castiel R, Eliakim R, Shinar E, Perets TT, Layfer O, Levhar N, Schvimer M, Marderfeld L, Ben-Horin S, Shamir R.

United European Gastroenterol J. 2019 Apr;7(3):412-418. doi: 10.1177/2050640618818227. Epub 2018 Dec 6.

29.

Validation and impact of paediatric malnutrition screening tool in hospitalised children on awareness of medical staff and health-related outcomes.

Marderfeld L, Rub G, Hodik G, Poraz I, Hartman C, Ashkenazi S, Shamir R.

Nutr Diet. 2019 Nov;76(5):574-579. doi: 10.1111/1747-0080.12529. Epub 2019 Apr 22.

PMID:
31012267
30.

Corrigendum to 'ESPEN guideline: Clinical nutrition in inflammatory bowel disease' [Clinical Nutrition 36 (2) (2016) 321-347].

Forbes A, Escher J, Hébuterne X, Kłęk S, Krznaric Z, Schneider S, Shamir R, Stardelova K, Wierdsma N, Wiskin AE, Bischoff SC.

Clin Nutr. 2019 Jun;38(3):1485. doi: 10.1016/j.clnu.2019.03.004. Epub 2019 Mar 14. No abstract available.

PMID:
30955984
31.

Editorial: New developments in paediatric clinical nutrition and metabolic care.

Koletzko B, Shamir R.

Curr Opin Clin Nutr Metab Care. 2019 May;22(3):205. doi: 10.1097/MCO.0000000000000562. No abstract available.

PMID:
30883468
32.

The Long-Term Effects of Dietary Nutrient Intakes during the First 2 Years of Life in Healthy Infants from Developed Countries: An Umbrella Review.

Agostoni C, Guz-Mark A, Marderfeld L, Milani GP, Silano M, Shamir R.

Adv Nutr. 2019 May 1;10(3):489-501. doi: 10.1093/advances/nmy106. Erratum in: Adv Nutr. 2019 Jul 1;10(4):730. Adv Nutr. 2019 Jul 1;10(4):730.

PMID:
30843039
33.

A Comparison of different scoring terminations rules for visual acuity testing: from a computer simulation to a clinical study.

Mimouni M, Shamir RR, Cohen AD, El-Yaniv R, Cohen MJ, Joskowicz L, Blumenthal EZ.

Curr Eye Res. 2019 Jul;44(7):790-795. doi: 10.1080/02713683.2019.1589524. Epub 2019 Apr 8.

PMID:
30829080
34.

Inadvertent Rapid Lipid Emulsion Administration.

Hoofien A, Mozer Y, Guz-Mark A, Hoffer V, Landau D, Shamir R.

Isr Med Assoc J. 2019 Feb;21(2):129-130. No abstract available.

35.

Corrigendum to "ESPEN guideline: Clinical nutrition in inflammatory bowel disease" [Clinical Nutrition 36 (2017) 321-347].

Forbes A, Escher J, Hébuterne X, Kłęk S, Krznaric Z, Schneider S, Shamir R, Stardelova K, Wierdsma N, Wiskin AE, Bischoff SC.

Clin Nutr. 2019 Jun;38(3):1486. doi: 10.1016/j.clnu.2019.01.017. Epub 2019 Jan 28. No abstract available.

PMID:
30704889
36.

NEMO: cancer subtyping by integration of partial multi-omic data.

Rappoport N, Shamir R.

Bioinformatics. 2019 Sep 15;35(18):3348-3356. doi: 10.1093/bioinformatics/btz058.

37.

Trends in the epidemiology of inflammatory bowel disease among Jewish Israeli adolescents: a population-based study.

Ghersin I, Khteeb N, Katz LH, Daher S, Shamir R, Assa A.

Aliment Pharmacol Ther. 2019 Mar;49(5):556-563. doi: 10.1111/apt.15160. Epub 2019 Jan 27.

PMID:
30687945
38.

The Brussels Infant and Toddler Stool Scale: A Study on Interobserver Reliability.

Huysentruyt K, Koppen I, Benninga M, Cattaert T, Cheng J, De Geyter C, Faure C, Gottrand F, Hegar B, Hojsak I, Miqdady M, Osatakul S, Ribes-Koninckx C, Salvatore S, Saps M, Shamir R, Staiano A, Szajewska H, Vieira M, Vandenplas Y; BITSS working group.

J Pediatr Gastroenterol Nutr. 2019 Feb;68(2):207-213. doi: 10.1097/MPG.0000000000002153.

PMID:
30672767
39.

The Effect of Gluten-free Diet on Cardiovascular Risk Factors in Newly Diagnosed Pediatric Celiac Disease Patients.

Zifman E, Waisbourd-Zinman O, Marderfeld L, Zevit N, Guz-Mark A, Silbermintz A, Assa A, Mozer-Glassberg Y, Biran N, Reznik D, Poraz I, Shamir R.

J Pediatr Gastroenterol Nutr. 2019 May;68(5):684-688. doi: 10.1097/MPG.0000000000002235.

PMID:
30562306
40.

Celiac Disease Prevention.

Meijer C, Shamir R, Szajewska H, Mearin L.

Front Pediatr. 2018 Nov 30;6:368. doi: 10.3389/fped.2018.00368. eCollection 2018. Review.

41.

Fecal Microbiota Transplantation for Recurrent Clostridium difficile Infection and Other Conditions in Children: A Joint Position Paper From the North American Society for Pediatric Gastroenterology, Hepatology, and Nutrition and the European Society for Pediatric Gastroenterology, Hepatology, and Nutrition.

Davidovics ZH, Michail S, Nicholson MR, Kociolek LK, Pai N, Hansen R, Schwerd T, Maspons A, Shamir R, Szajewska H, Thapar N, de Meij T, Mosca A, Vandenplas Y, Kahn SA, Kellermayer R; FMT Special Interest Group of the North American Society of Pediatric Gastroenterology Hepatology, Nutrition, the European Society for Pediatric Gastroenterology Hepatology, Nutrition.

J Pediatr Gastroenterol Nutr. 2019 Jan;68(1):130-143. doi: 10.1097/MPG.0000000000002205.

42.

Multi-omic and multi-view clustering algorithms: review and cancer benchmark.

Rappoport N, Shamir R.

Nucleic Acids Res. 2019 Jan 25;47(2):1044. doi: 10.1093/nar/gky1226. No abstract available.

43.

ESPGHAN/ESPEN/ESPR/CSPEN guidelines on pediatric parenteral nutrition.

Mihatsch WA, Braegger C, Bronsky J, Cai W, Campoy C, Carnielli V, Darmaun D, Desci T, Domellöf M, Embleton N, Fewtrell M, Mis NF, Franz A, Goulet O, Hartman C, Susan H, Hojsak I, Iacobelli S, Jochum F, Joosten K, Kolacek S, Koletzko B, Ksiazyk J, Lapillonne A, Lohner S, Mesotten D, Mihalyi K, Mimouni F, Mølgaard C, Moltu SJ, Nomayo A, Picaud JC, Prell C, Puntis J, Riskin A, de Pipaon MS, Senterre T, Shamir R, Simchowitz V, Szitanyi P, Tabbers MM, van den Akker CHB, van Goudoever JB, van Kempen A, Verbruggen S, Wu J, Yan W.

Clin Nutr. 2018 Dec;37(6 Pt B):2303-2305. doi: 10.1016/j.clnu.2018.05.029. Epub 2018 Jun 7. No abstract available.

PMID:
30471662
44.

Erratum: Author Correction: GePMI: a statistical model for personal intestinal microbiome identification.

Wang Z, Lou H, Wang Y, Shamir R, Jiang R, Chen T.

NPJ Biofilms Microbiomes. 2018 Nov 7;4:28. doi: 10.1038/s41522-018-0071-4. eCollection 2018.

45.

Automatic localization of the subthalamic nucleus on patient-specific clinical MRI by incorporating 7 T MRI and machine learning: Application in deep brain stimulation.

Kim J, Duchin Y, Shamir RR, Patriat R, Vitek J, Harel N, Sapiro G.

Hum Brain Mapp. 2019 Feb 1;40(2):679-698. doi: 10.1002/hbm.24404. Epub 2018 Oct 31.

46.

Anthropometric Measures in Adolescents With Inflammatory Bowel Disease: A Population-Based Study.

Ghersin I, Khateeb N, Katz LH, Daher S, Shamir R, Assa A.

Inflamm Bowel Dis. 2019 May 4;25(6):1061-1065. doi: 10.1093/ibd/izy336.

PMID:
30358844
47.

Primary infection with human herpes virus type 6, post-pediatric liver transplantation-A pathogen to remember.

Pappo-Toledano A, Dovrat S, Soufiev Z, Mozer-Glassberg Y, Krause I, Rom E, Shamir R, Bilavsky E.

Transpl Infect Dis. 2019 Feb;21(1):e13014. doi: 10.1111/tid.13014. Epub 2018 Nov 15.

PMID:
30346638
48.

Multi-omic and multi-view clustering algorithms: review and cancer benchmark.

Rappoport N, Shamir R.

Nucleic Acids Res. 2018 Nov 16;46(20):10546-10562. doi: 10.1093/nar/gky889. Review. Erratum in: Nucleic Acids Res. 2019 Jan 25;47(2):1044.

49.

Endoscopic findings and esophageal cancer incidence among Fanconi Anemia patients participating in an endoscopic surveillance program.

Itskoviz D, Tamary H, Krasnov T, Yacobovich J, Sahar N, Zevit N, Shamir R, Ben-Bassat O, Leibovici Wiseman Y, Dickman R, Ringel Y, Dotan I, Goldberg Y, Morgenstern S, Levi Z.

Dig Liver Dis. 2019 Feb;51(2):242-246. doi: 10.1016/j.dld.2018.08.010. Epub 2018 Aug 18.

PMID:
30249500
50.

The Brussels Infant and Toddler Stool Scale: A Study On Inter-Observer Reliability.

Huysentruyt K, Koppen I, Benninga M, Cattaert T, Cheng J, De Geyter C, Christophe F, Gottrand F, Hegar B, Hojsak I, Miqdady M, Osatakul S, Ribes-Koninckx C, Salvatore S, Saps M, Shamir R, Staiano A, Szajewska H, Vieira M, Vandenplas Y; and the BITSS working group.

J Pediatr Gastroenterol Nutr. 2018 Sep 20. doi: 10.1097/MPG.0000000000002153. [Epub ahead of print]

PMID:
30247426

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