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Items: 1 to 50 of 579

1.

Prevalence and Predictors of Growth Impairment and Short Stature in Pediatric-Onset Inflammatory Bowel Disease.

Rinawi F, Assa A, Almagor T, Ziv-Baran T, Shamir R.

Digestion. 2019 Sep 13:1-9. doi: 10.1159/000501924. [Epub ahead of print]

PMID:
31522182
2.

Inaccuracy of the log-rank approximation in cancer data analysis.

Rappoport N, Shamir R.

Mol Syst Biol. 2019 Aug;15(8):e8754. doi: 10.15252/msb.20188754.

3.

Letter: Lactobacillus rhamnosus GG offers no benefit over placebo in children with acute gastroenteritis. Authors' reply.

Szajewska H, Kołodziej M, Shamir R.

Aliment Pharmacol Ther. 2019 Sep;50(5):622-623. doi: 10.1111/apt.15431. No abstract available.

PMID:
31414543
4.

Personalized prediction of adverse heart and kidney events using baseline and longitudinal data from SPRINT and ACCORD.

Dinstag G, Amar D, Ingelsson E, Ashley E, Shamir R.

PLoS One. 2019 Aug 8;14(8):e0219728. doi: 10.1371/journal.pone.0219728. eCollection 2019.

5.

Micronutrient Deficiencies in Children With Inflammatory Bowel Diseases.

Ehrlich S, Mark AG, Rinawi F, Shamir R, Assa A.

Nutr Clin Pract. 2019 Jul 25. doi: 10.1002/ncp.10373. [Epub ahead of print]

PMID:
31342601
6.

Initial Development and Validation of a Transition Readiness Scale for Adolescents with Inflammatory Bowel Disease.

Hammerman O, Bayatra A, Turner D, Levine A, Shamir R, Assa A, Wilschanski M, Bachner YG, Israeli E.

Gastroenterol Res Pract. 2019 Jun 18;2019:5062105. doi: 10.1155/2019/5062105. eCollection 2019.

7.

Sex, Ethnicity, and Socioeconomic Status Affect on Israeli Pediatric Lipid Testing Despite Equality in National Healthcare Services.

Interator H, Brener A, Hoshen M, Safra I, Balicer R, Leshno M, Shamir R, Lebenthal Y.

Isr Med Assoc J. 2019 Jun;21(6):369-375.

8.

Noncoding deletions reveal a gene that is critical for intestinal function.

Oz-Levi D, Olender T, Bar-Joseph I, Zhu Y, Marek-Yagel D, Barozzi I, Osterwalder M, Alkelai A, Ruzzo EK, Han Y, Vos ESM, Reznik-Wolf H, Hartman C, Shamir R, Weiss B, Shapiro R, Pode-Shakked B, Tatarskyy P, Milgrom R, Schvimer M, Barshack I, Imai DM, Coleman-Derr D, Dickel DE, Nord AS, Afzal V, van Bueren KL, Barnes RM, Black BL, Mayhew CN, Kuhar MF, Pitstick A, Tekman M, Stanescu HC, Wells JM, Kleta R, de Laat W, Goldstein DB, Pras E, Visel A, Lancet D, Anikster Y, Pennacchio LA.

Nature. 2019 Jul;571(7763):107-111. doi: 10.1038/s41586-019-1312-2. Epub 2019 Jun 19.

PMID:
31217582
9.

Proactive Monitoring of Adalimumab Trough Concentration Associated With Increased Clinical Remission in Children with Crohn's Disease Compared With Reactive Monitoring.

Assa A, Matar M, Turner D, Broide E, Weiss B, Ledder O, Guz-Mark A, Rinawi F, Cohen S, Topf-Olivestone C, Shaoul R, Yerushalmi B, Shamir R.

Gastroenterology. 2019 Jun 10. pii: S0016-5085(19)41000-7. doi: 10.1053/j.gastro.2019.06.003. [Epub ahead of print]

PMID:
31194979
10.

2019 ISCB Overton Prize: Christophe Dessimoz.

Kovats D, Shamir R, Fogg C.

F1000Res. 2019 May 23;8. pii: ISCB Comm J-722. doi: 10.12688/f1000research.19220.1. eCollection 2019.

11.

2019 ISCB Innovator Award recognizes William Stafford Noble.

Kovats D, Shamir R, Fogg C.

F1000Res. 2019 May 23;8. pii: ISCB Comm J-723. doi: 10.12688/f1000research.19221.1. eCollection 2019.

12.

2019 Outstanding Contributions to ISCB awarded to Barb Bryant.

Kovats D, Shamir R, Fogg C.

F1000Res. 2019 May 23;8. pii: ISCB Comm J-720. doi: 10.12688/f1000research.19218.1. eCollection 2019.

13.

Bonnie Berger named ISCB 2019 ISCB Accomplishments by a Senior Scientist Award recipient.

Kovats D, Shamir R, Fogg C.

F1000Res. 2019 May 23;8. pii: ISCB Comm J-721. doi: 10.12688/f1000research.19219.1. eCollection 2019.

14.

The EXPANDER Integrated Platform for Transcriptome Analysis.

Hait TA, Maron-Katz A, Sagir D, Amar D, Ulitsky I, Linhart C, Tanay A, Sharan R, Shiloh Y, Elkon R, Shamir R.

J Mol Biol. 2019 Jun 14;431(13):2398-2406. doi: 10.1016/j.jmb.2019.05.013. Epub 2019 May 14.

15.

Endoscopic Findings in Children with Isolated Lower Gastrointestinal Bleeding.

Silbermintz A, Matar M, Assa A, Zevit N, Glassberg YM, Shamir R.

Clin Endosc. 2019 May;52(3):258-261. doi: 10.5946/ce.2018.046. Epub 2019 May 14.

16.

Systematic review with meta-analysis: Lactobacillus rhamnosus GG for treating acute gastroenteritis in children - a 2019 update.

Szajewska H, Kołodziej M, Gieruszczak-Białek D, Skórka A, Ruszczyński M, Shamir R.

Aliment Pharmacol Ther. 2019 Jun;49(11):1376-1384. doi: 10.1111/apt.15267. Epub 2019 Apr 25. Review.

PMID:
31025399
17.

Rising prevalence of celiac disease is not universal and repeated testing is needed for population screening.

Levinson-Castiel R, Eliakim R, Shinar E, Perets TT, Layfer O, Levhar N, Schvimer M, Marderfeld L, Ben-Horin S, Shamir R.

United European Gastroenterol J. 2019 Apr;7(3):412-418. doi: 10.1177/2050640618818227. Epub 2018 Dec 6.

18.

Validation and impact of paediatric malnutrition screening tool in hospitalised children on awareness of medical staff and health-related outcomes.

Marderfeld L, Rub G, Hodik G, Poraz I, Hartman C, Ashkenazi S, Shamir R.

Nutr Diet. 2019 Apr 22. doi: 10.1111/1747-0080.12529. [Epub ahead of print]

PMID:
31012267
19.

Corrigendum to 'ESPEN guideline: Clinical nutrition in inflammatory bowel disease' [Clinical Nutrition 36 (2) (2016) 321-347].

Forbes A, Escher J, Hébuterne X, Kłęk S, Krznaric Z, Schneider S, Shamir R, Stardelova K, Wierdsma N, Wiskin AE, Bischoff SC.

Clin Nutr. 2019 Jun;38(3):1485. doi: 10.1016/j.clnu.2019.03.004. Epub 2019 Mar 14. No abstract available.

PMID:
30955984
20.

Editorial: New developments in paediatric clinical nutrition and metabolic care.

Koletzko B, Shamir R.

Curr Opin Clin Nutr Metab Care. 2019 May;22(3):205. doi: 10.1097/MCO.0000000000000562. No abstract available.

PMID:
30883468
21.

The Long-Term Effects of Dietary Nutrient Intakes during the First 2 Years of Life in Healthy Infants from Developed Countries: An Umbrella Review.

Agostoni C, Guz-Mark A, Marderfeld L, Milani GP, Silano M, Shamir R.

Adv Nutr. 2019 May 1;10(3):489-501. doi: 10.1093/advances/nmy106. Erratum in: Adv Nutr. 2019 Jul 1;10(4):730.

PMID:
30843039
22.

A Comparison of different scoring terminations rules for visual acuity testing: from a computer simulation to a clinical study.

Mimouni M, Shamir RR, Cohen AD, El-Yaniv R, Cohen MJ, Joskowicz L, Blumenthal EZ.

Curr Eye Res. 2019 Jul;44(7):790-795. doi: 10.1080/02713683.2019.1589524. Epub 2019 Apr 8.

PMID:
30829080
23.

Inadvertent Rapid Lipid Emulsion Administration.

Hoofien A, Mozer Y, Guz-Mark A, Hoffer V, Landau D, Shamir R.

Isr Med Assoc J. 2019 Feb;21(2):129-130. No abstract available.

24.

Corrigendum to "ESPEN guideline: Clinical nutrition in inflammatory bowel disease" [Clinical Nutrition 36 (2017) 321-347].

Forbes A, Escher J, Hébuterne X, Kłęk S, Krznaric Z, Schneider S, Shamir R, Stardelova K, Wierdsma N, Wiskin AE, Bischoff SC.

Clin Nutr. 2019 Jun;38(3):1486. doi: 10.1016/j.clnu.2019.01.017. Epub 2019 Jan 28. No abstract available.

PMID:
30704889
25.

NEMO: cancer subtyping by integration of partial multi-omic data.

Rappoport N, Shamir R.

Bioinformatics. 2019 Sep 15;35(18):3348-3356. doi: 10.1093/bioinformatics/btz058.

PMID:
30698637
26.

Trends in the epidemiology of inflammatory bowel disease among Jewish Israeli adolescents: a population-based study.

Ghersin I, Khteeb N, Katz LH, Daher S, Shamir R, Assa A.

Aliment Pharmacol Ther. 2019 Mar;49(5):556-563. doi: 10.1111/apt.15160. Epub 2019 Jan 27.

PMID:
30687945
27.

The Brussels Infant and Toddler Stool Scale: A Study on Interobserver Reliability.

Huysentruyt K, Koppen I, Benninga M, Cattaert T, Cheng J, De Geyter C, Faure C, Gottrand F, Hegar B, Hojsak I, Miqdady M, Osatakul S, Ribes-Koninckx C, Salvatore S, Saps M, Shamir R, Staiano A, Szajewska H, Vieira M, Vandenplas Y; and the BITSS working group.

J Pediatr Gastroenterol Nutr. 2019 Feb;68(2):207-213. doi: 10.1097/MPG.0000000000002153.

PMID:
30672767
28.

The Effect of Gluten-free Diet on Cardiovascular Risk Factors in Newly Diagnosed Pediatric Celiac Disease Patients.

Zifman E, Waisbourd-Zinman O, Marderfeld L, Zevit N, Guz-Mark A, Silbermintz A, Assa A, Mozer-Glassberg Y, Biran N, Reznik D, Poraz I, Shamir R.

J Pediatr Gastroenterol Nutr. 2019 May;68(5):684-688. doi: 10.1097/MPG.0000000000002235.

PMID:
30562306
29.

Celiac Disease Prevention.

Meijer C, Shamir R, Szajewska H, Mearin L.

Front Pediatr. 2018 Nov 30;6:368. doi: 10.3389/fped.2018.00368. eCollection 2018. Review.

30.

Fecal Microbiota Transplantation for Recurrent Clostridium difficile Infection and Other Conditions in Children: A Joint Position Paper From the North American Society for Pediatric Gastroenterology, Hepatology, and Nutrition and the European Society for Pediatric Gastroenterology, Hepatology, and Nutrition.

Davidovics ZH, Michail S, Nicholson MR, Kociolek LK, Pai N, Hansen R, Schwerd T, Maspons A, Shamir R, Szajewska H, Thapar N, de Meij T, Mosca A, Vandenplas Y, Kahn SA, Kellermayer R; and the FMT Special Interest Group of the North American Society of Pediatric Gastroenterology Hepatology, Nutrition, the European Society for Pediatric Gastroenterology Hepatology, Nutrition.

J Pediatr Gastroenterol Nutr. 2019 Jan;68(1):130-143. doi: 10.1097/MPG.0000000000002205.

31.

Multi-omic and multi-view clustering algorithms: review and cancer benchmark.

Rappoport N, Shamir R.

Nucleic Acids Res. 2019 Jan 25;47(2):1044. doi: 10.1093/nar/gky1226. No abstract available.

32.

ESPGHAN/ESPEN/ESPR/CSPEN guidelines on pediatric parenteral nutrition.

Mihatsch WA, Braegger C, Bronsky J, Cai W, Campoy C, Carnielli V, Darmaun D, Desci T, Domellöf M, Embleton N, Fewtrell M, Mis NF, Franz A, Goulet O, Hartman C, Susan H, Hojsak I, Iacobelli S, Jochum F, Joosten K, Kolacek S, Koletzko B, Ksiazyk J, Lapillonne A, Lohner S, Mesotten D, Mihalyi K, Mimouni F, Mølgaard C, Moltu SJ, Nomayo A, Picaud JC, Prell C, Puntis J, Riskin A, de Pipaon MS, Senterre T, Shamir R, Simchowitz V, Szitanyi P, Tabbers MM, van den Akker CHB, van Goudoever JB, van Kempen A, Verbruggen S, Wu J, Yan W.

Clin Nutr. 2018 Dec;37(6 Pt B):2303-2305. doi: 10.1016/j.clnu.2018.05.029. Epub 2018 Jun 7. No abstract available.

PMID:
30471662
33.

Erratum: Author Correction: GePMI: a statistical model for personal intestinal microbiome identification.

Wang Z, Lou H, Wang Y, Shamir R, Jiang R, Chen T.

NPJ Biofilms Microbiomes. 2018 Nov 7;4:28. doi: 10.1038/s41522-018-0071-4. eCollection 2018.

34.

Automatic localization of the subthalamic nucleus on patient-specific clinical MRI by incorporating 7 T MRI and machine learning: Application in deep brain stimulation.

Kim J, Duchin Y, Shamir RR, Patriat R, Vitek J, Harel N, Sapiro G.

Hum Brain Mapp. 2019 Feb 1;40(2):679-698. doi: 10.1002/hbm.24404. Epub 2018 Oct 31.

35.

Anthropometric Measures in Adolescents With Inflammatory Bowel Disease: A Population-Based Study.

Ghersin I, Khateeb N, Katz LH, Daher S, Shamir R, Assa A.

Inflamm Bowel Dis. 2019 May 4;25(6):1061-1065. doi: 10.1093/ibd/izy336.

PMID:
30358844
36.

Primary infection with human herpes virus type 6, post-pediatric liver transplantation-A pathogen to remember.

Pappo-Toledano A, Dovrat S, Soufiev Z, Mozer-Glassberg Y, Krause I, Rom E, Shamir R, Bilavsky E.

Transpl Infect Dis. 2019 Feb;21(1):e13014. doi: 10.1111/tid.13014. Epub 2018 Nov 15.

PMID:
30346638
37.

Multi-omic and multi-view clustering algorithms: review and cancer benchmark.

Rappoport N, Shamir R.

Nucleic Acids Res. 2018 Nov 16;46(20):10546-10562. doi: 10.1093/nar/gky889. Review. Erratum in: Nucleic Acids Res. 2019 Jan 25;47(2):1044.

38.

Endoscopic findings and esophageal cancer incidence among Fanconi Anemia patients participating in an endoscopic surveillance program.

Itskoviz D, Tamary H, Krasnov T, Yacobovich J, Sahar N, Zevit N, Shamir R, Ben-Bassat O, Leibovici Wiseman Y, Dickman R, Ringel Y, Dotan I, Goldberg Y, Morgenstern S, Levi Z.

Dig Liver Dis. 2019 Feb;51(2):242-246. doi: 10.1016/j.dld.2018.08.010. Epub 2018 Aug 18.

PMID:
30249500
39.

The Brussels Infant and Toddler Stool Scale: A Study On Inter-Observer Reliability.

Huysentruyt K, Koppen I, Benninga M, Cattaert T, Cheng J, De Geyter C, Christophe F, Gottrand F, Hegar B, Hojsak I, Miqdady M, Osatakul S, Ribes-Koninckx C, Salvatore S, Saps M, Shamir R, Staiano A, Szajewska H, Vieira M, Vandenplas Y; and the BITSS working group.

J Pediatr Gastroenterol Nutr. 2018 Sep 20. doi: 10.1097/MPG.0000000000002153. [Epub ahead of print]

PMID:
30247426
40.

GePMI: A statistical model for personal intestinal microbiome identification.

Wang Z, Lou H, Wang Y, Shamir R, Jiang R, Chen T.

NPJ Biofilms Microbiomes. 2018 Sep 4;4:20. doi: 10.1038/s41522-018-0065-2. eCollection 2018. Erratum in: NPJ Biofilms Microbiomes. 2018 Nov 7;4:28.

41.

Genomic meta-analysis of the interplay between 3D chromatin organization and gene expression programs under basal and stress conditions.

Nurick I, Shamir R, Elkon R.

Epigenetics Chromatin. 2018 Aug 29;11(1):49. doi: 10.1186/s13072-018-0220-2.

42.

Patient-specific anatomical model for deep brain stimulation based on 7 Tesla MRI.

Duchin Y, Shamir RR, Patriat R, Kim J, Vitek JL, Sapiro G, Harel N.

PLoS One. 2018 Aug 22;13(8):e0201469. doi: 10.1371/journal.pone.0201469. eCollection 2018.

43.

ESPGHAN Distinguished Service Award 2018 to Professor Markku Mäki.

Shamir R, Popp A.

J Pediatr Gastroenterol Nutr. 2018 Dec;67(6):681-682. doi: 10.1097/MPG.0000000000002131. No abstract available.

PMID:
30119099
44.

ESPGHAN/ESPEN/ESPR/CSPEN guidelines on pediatric parenteral nutrition: Guideline development process for the updated guidelines.

Mihatsch W, Shamir R, van Goudoever JB, Fewtrell M, Lapillonne A, Lohner S, Mihályi K, Decsi T; ESPEN/ESPEN/ESPR/CSPEN working group on pediatric parenteral nutrition.

Clin Nutr. 2018 Dec;37(6 Pt B):2306-2308. doi: 10.1016/j.clnu.2018.06.943. Epub 2018 Jun 27. No abstract available.

PMID:
30055868
45.

ESPGHAN/ESPEN/ESPR/CSPEN guidelines on pediatric parenteral nutrition: Standard versus individualized parenteral nutrition.

Riskin A, Picaud JC, Shamir R; ESPGHAN/ESPEN/ESPR/CSPEN working group on pediatric parenteral nutrition.

Clin Nutr. 2018 Dec;37(6 Pt B):2409-2417. doi: 10.1016/j.clnu.2018.06.955. Epub 2018 Jun 18. No abstract available.

PMID:
30055867
46.

ESPGHAN/ESPEN/ESPR/CSPEN guidelines on pediatric parenteral nutrition: Complications.

Hartman C, Shamir R, Simchowitz V, Lohner S, Cai W, Decsi T; ESPGHAN/ESPEN/ESPR/CSPEN working group on pediatric parenteral nutrition.

Clin Nutr. 2018 Dec;37(6 Pt B):2418-2429. doi: 10.1016/j.clnu.2018.06.956. Epub 2018 Jun 28. No abstract available.

PMID:
30033173
47.
48.

2018 ISCB Overton Prize awarded to Cole Trapnell.

Fogg CN, Kovats DE, Shamir R.

PLoS Comput Biol. 2018 Jun 7;14(6):e1006163. doi: 10.1371/journal.pcbi.1006163. eCollection 2018 Jun. No abstract available.

49.

2018 ISCB Innovator Award recognizes M. Madan Babu.

Fogg CN, Kovats DE, Shamir R.

PLoS Comput Biol. 2018 Jun 7;14(6):e1006164. doi: 10.1371/journal.pcbi.1006164. eCollection 2018 Jun. No abstract available.

50.

2018 ISCB Overton Prize awarded to Cole Trapnell.

Fogg CN, Kovats DE, Shamir R.

Bioinformatics. 2018 Jul 1;34(13):2330-2331. doi: 10.1093/bioinformatics/bty360. No abstract available.

PMID:
29868884

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