Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 542

1.

Multi-omic and multi-view clustering algorithms: review and cancer benchmark.

Rappoport N, Shamir R.

Nucleic Acids Res. 2018 Oct 8. doi: 10.1093/nar/gky889. [Epub ahead of print]

PMID:
30295871
2.

Endoscopic findings and esophageal cancer incidence among Fanconi Anemia patients participating in an endoscopic surveillance program.

Itskoviz D, Tamary H, Krasnov T, Yacobovich J, Sahar N, Zevit N, Shamir R, Ben-Bassat O, Leibovici Wiseman Y, Dickman R, Ringel Y, Dotan I, Goldberg Y, Morgenstern S, Levi Z.

Dig Liver Dis. 2018 Aug 18. pii: S1590-8658(18)30890-9. doi: 10.1016/j.dld.2018.08.010. [Epub ahead of print]

PMID:
30249500
3.

The Brussels Infant and Toddler Stool Scale: A Study On Inter-Observer Reliability.

Huysentruyt K, Koppen I, Benninga M, Cattaert T, Cheng J, De Geyter C, Christophe F, Gottrand F, Hegar B, Hojsak I, Miqdady M, Osatakul S, Ribes-Koninckx C, Salvatore S, Saps M, Shamir R, Staiano A, Szajewska H, Vieira M, Vandenplas Y; and the BITSS working group.

J Pediatr Gastroenterol Nutr. 2018 Sep 20. doi: 10.1097/MPG.0000000000002153. [Epub ahead of print]

PMID:
30247426
4.

GePMI: A statistical model for personal intestinal microbiome identification.

Wang Z, Lou H, Wang Y, Shamir R, Jiang R, Chen T.

NPJ Biofilms Microbiomes. 2018 Sep 4;4:20. doi: 10.1038/s41522-018-0065-2. eCollection 2018.

5.

Genomic meta-analysis of the interplay between 3D chromatin organization and gene expression programs under basal and stress conditions.

Nurick I, Shamir R, Elkon R.

Epigenetics Chromatin. 2018 Aug 29;11(1):49. doi: 10.1186/s13072-018-0220-2.

6.

Patient-specific anatomical model for deep brain stimulation based on 7 Tesla MRI.

Duchin Y, Shamir RR, Patriat R, Kim J, Vitek JL, Sapiro G, Harel N.

PLoS One. 2018 Aug 22;13(8):e0201469. doi: 10.1371/journal.pone.0201469. eCollection 2018.

7.

ESPGHAN Distinguished Service Award 2018 to Professor Markku Mäki.

Shamir R, Popp A.

J Pediatr Gastroenterol Nutr. 2018 Aug 16. doi: 10.1097/MPG.0000000000002131. [Epub ahead of print] No abstract available.

PMID:
30119099
8.

ESPGHAN/ESPEN/ESPR/CSPEN guidelines on pediatric parenteral nutrition: Guideline development process for the updated guidelines.

Mihatsch W, Shamir R, van Goudoever JB, Fewtrell M, Lapillonne A, Lohner S, Mihályi K, Decsi T; ESPEN/ESPEN/ESPR/CSPEN working group on pediatric parenteral nutrition.

Clin Nutr. 2018 Jun 27. pii: S0261-5614(18)31162-2. doi: 10.1016/j.clnu.2018.06.943. [Epub ahead of print] No abstract available.

PMID:
30055868
9.

ESPGHAN/ESPEN/ESPR guidelines on pediatric parenteral nutrition: Standard versus individualized parenteral nutrition.

Riskin A, Picaud JC, Shamir R; ESPGHAN/ESPEN/ESPR/CSPEN working group on pediatric parenteral nutrition.

Clin Nutr. 2018 Jun 18. pii: S0261-5614(18)31174-9. doi: 10.1016/j.clnu.2018.06.955. [Epub ahead of print] No abstract available.

PMID:
30055867
10.

ESPGHAN/ESPEN/ESPR guidelines on pediatric parenteral nutrition: Complications.

Hartman C, Shamir R, Simchowitz V, Lohner S, Cai W, Decsi T; ESPGHAN/ESPEN/ESPR/CSPEN working group on pediatric parenteral nutrition.

Clin Nutr. 2018 Jun 28. pii: S0261-5614(18)31175-0. doi: 10.1016/j.clnu.2018.06.956. [Epub ahead of print] No abstract available.

PMID:
30033173
11.
12.

2018 ISCB Overton Prize awarded to Cole Trapnell.

Fogg CN, Kovats DE, Shamir R.

PLoS Comput Biol. 2018 Jun 7;14(6):e1006163. doi: 10.1371/journal.pcbi.1006163. eCollection 2018 Jun. No abstract available.

13.

2018 ISCB Innovator Award recognizes M. Madan Babu.

Fogg CN, Kovats DE, Shamir R.

PLoS Comput Biol. 2018 Jun 7;14(6):e1006164. doi: 10.1371/journal.pcbi.1006164. eCollection 2018 Jun. No abstract available.

14.

2018 ISCB Overton Prize awarded to Cole Trapnell.

Fogg CN, Kovats DE, Shamir R.

Bioinformatics. 2018 Jul 1;34(13):2330-2331. doi: 10.1093/bioinformatics/bty360. No abstract available.

PMID:
29868884
15.

Message from the ISCB: 2018 Outstanding Contributions to ISCB Award: Russ Altman.

Fogg CN, Kovats DE, Shamir R.

Bioinformatics. 2018 Jul 1;34(13):2334-2335. doi: 10.1093/bioinformatics/bty308. No abstract available.

PMID:
29868819
16.

Message from the ISCB: 2018 ISCB Accomplishments by a Senior Scientist Award.

Fogg CN, Kovats DE, Shamir R.

Bioinformatics. 2018 Jul 1;34(13):2332-2333. doi: 10.1093/bioinformatics/bty284. No abstract available.

PMID:
29868787
17.

2018 ISCB Innovator Award recognizes M. Madan Babu.

Fogg CN, Kovats DE, Shamir R.

Bioinformatics. 2018 Jul 1;34(13):2336-2337. doi: 10.1093/bioinformatics/bty328. No abstract available.

PMID:
29868709
18.

Microelectrode Recordings Validate the Clinical Visualization of Subthalamic-Nucleus Based on 7T Magnetic Resonance Imaging and Machine Learning for Deep Brain Stimulation Surgery.

Shamir RR, Duchin Y, Kim J, Patriat R, Marmor O, Bergman H, Vitek JL, Sapiro G, Bick A, Eliahou R, Eitan R, Israel Z, Harel N.

Neurosurgery. 2018 May 24. doi: 10.1093/neuros/nyy212. [Epub ahead of print]

PMID:
29800386
19.

2018 ISCB accomplishments by a senior scientist award.

Fogg CN, Kovats DE, Shamir R.

PLoS Comput Biol. 2018 May 17;14(5):e1006138. doi: 10.1371/journal.pcbi.1006138. eCollection 2018 May. No abstract available.

20.

2018 outstanding contributions to ISCB award: Russ Altman.

Fogg CN, Kovats DE, Shamir R.

PLoS Comput Biol. 2018 May 17;14(5):e1006140. doi: 10.1371/journal.pcbi.1006140. eCollection 2018 May. No abstract available.

21.

Sorting cancer karyotypes using double-cut-and-joins, duplications and deletions.

Zeira R, Shamir R.

Bioinformatics. 2018 May 3. doi: 10.1093/bioinformatics/bty381. [Epub ahead of print]

PMID:
29726899
22.

FOCS: a novel method for analyzing enhancer and gene activity patterns infers an extensive enhancer-promoter map.

Hait TA, Amar D, Shamir R, Elkon R.

Genome Biol. 2018 May 1;19(1):56. doi: 10.1186/s13059-018-1432-2.

23.

Opinions and practices of healthcare professionals on assessment of disease associated malnutrition in children: Results from an international survey.

Huysentruyt K, Hulst J, Bian F, Shamir R, White M, Galera-Martinez R, Morais-Lopez A, Kansu A, Gerasimidis K.

Clin Nutr. 2018 Apr 5. pii: S0261-5614(18)30127-4. doi: 10.1016/j.clnu.2018.03.015. [Epub ahead of print]

PMID:
29653864
24.

Birth Month as a Risk Factor for the Diagnosis of Celiac Disease Later in Life: A Population-based Study.

Assa A, Waisbourd-Zinman O, Daher S, Shamir R.

J Pediatr Gastroenterol Nutr. 2018 Sep;67(3):367-370. doi: 10.1097/MPG.0000000000002001.

PMID:
29642117
25.

MorphDB: Prioritizing Genes for Specialized Metabolism Pathways and Gene Ontology Categories in Plants.

Zwaenepoel A, Diels T, Amar D, Van Parys T, Shamir R, Van de Peer Y, Tzfadia O.

Front Plant Sci. 2018 Mar 19;9:352. doi: 10.3389/fpls.2018.00352. eCollection 2018.

26.

Leptin stimulates aromatase in the growth plate: limiting catch-up growth efficiency.

Masarwi M, Shamir R, Phillip M, Gat-Yablonski G.

J Endocrinol. 2018 Jun;237(3):229-242. doi: 10.1530/JOE-18-0028. Epub 2018 Apr 3.

PMID:
29615477
27.

Chapter 8. 50 Years of the European Society for Paediatric Gastroenterology, Hepatology and Nutrition (ESPGHAN): Captivating Witness Reports of a Success Story.

Auricchio S, Cadranel S, Guandalini S, Kelly D, Koletzko B, Lentze MJ, McNeish AS, Milla PJ, Rey J, Schmitz J, Shamir R, Strandvik B, Troncone R, Visakorpi J.

J Pediatr Gastroenterol Nutr. 2018 Apr;66 Suppl 1:S154-S171. doi: 10.1097/MPG.0000000000001919.

PMID:
29596189
28.

Chapter 3. The European Society for Paediatric Gastroenterology, Hepatology and Nutrition in Recent Years.

Koletzko B, Shamir R, Broekaert I, Troncone R.

J Pediatr Gastroenterol Nutr. 2018 Apr;66 Suppl 1:S29-S43. doi: 10.1097/MPG.0000000000001913.

PMID:
29596163
29.

Nutrition in Pediatric Inflammatory Bowel Disease: A Position Paper on Behalf of the Porto Inflammatory Bowel Disease Group of the European Society of Pediatric Gastroenterology, Hepatology and Nutrition.

Miele E, Shamir R, Aloi M, Assa A, Braegger C, Bronsky J, de Ridder L, Escher JC, Hojsak I, Kolaček S, Koletzko S, Levine A, Lionetti P, Martinelli M, Ruemmele F, Russell RK, Boneh RS, van Limbergen J, Veereman G, Staiano A.

J Pediatr Gastroenterol Nutr. 2018 Apr;66(4):687-708. doi: 10.1097/MPG.0000000000001896.

PMID:
29570147
30.

Practice Differences in the Diagnosis and Management of Eosinophilic Esophagitis Among Adult and Pediatric Gastroenterologists in Israel.

Zifman E, Banai H, Shamir R, Ringel-Kulka T, Zevit N.

J Pediatr Gastroenterol Nutr. 2018 Jul;67(1):34-39. doi: 10.1097/MPG.0000000000001909.

PMID:
29394215
31.

Nutrition and Growth in Chronic Disease.

Hartman C, Shamir R.

World Rev Nutr Diet. 2018;117:84-110. doi: 10.1159/000484501. Epub 2018 Jan 29. Review. No abstract available.

PMID:
29393115
32.

Nutrition in Paediatric Inflammatory Bowel Disease: A Position Paper on Behalf of The Porto IBD Group of ESPGHAN.

Miele E, Shamir R, Aloi M, Assa A, Braegger C, Bronsky J, de Ridder L, Escher JC, Hojsak I, Kolaček S, Koletzko S, Levine A, Lionetti P, Martinelli M, Ruemmele F, Russell RK, Boneh RS, van Limbergen J, Veereman G, Staiano A.

J Pediatr Gastroenterol Nutr. 2018 Jan 29. doi: 10.1097/MPG.0000000000001896. [Epub ahead of print]

PMID:
29384890
33.

Probiotics for Preterm Infants: A Strain-Specific Systematic Review and Network Meta-analysis.

van den Akker CHP, van Goudoever JB, Szajewska H, Embleton ND, Hojsak I, Reid D, Shamir R; ESPGHAN Working Group for Probiotics, Prebiotics & Committee on Nutrition.

J Pediatr Gastroenterol Nutr. 2018 Jul;67(1):103-122. doi: 10.1097/MPG.0000000000001897.

PMID:
29384838
34.

Histopathological evaluation of duodenal biopsy in the PreventCD project. An observational interobserver agreement study.

Villanacci V, Lorenzi L, Donato F, Auricchio R, Dziechciarz P, Gyimesi J, Koletzko S, Mišak Z, Laguna VM, Polanco I, Ramos D, Shamir R, Troncone R, Vriezinga SL, Mearin ML.

APMIS. 2018 Mar;126(3):208-214. doi: 10.1111/apm.12812. Epub 2018 Jan 26.

PMID:
29372596
35.

ADEPTUS: a discovery tool for disease prediction, enrichment and network analysis based on profiles from many diseases.

Amar D, Vizel A, Levy C, Shamir R.

Bioinformatics. 2018 Jun 1;34(11):1959-1961. doi: 10.1093/bioinformatics/bty027.

PMID:
29360930
36.

Tracing the Neural Carryover Effects of Interpersonal Anger on Resting-State fMRI in Men and Their Relation to Traumatic Stress Symptoms in a Subsample of Soldiers.

Gilam G, Maron-Katz A, Kliper E, Lin T, Fruchter E, Shamir R, Hendler T.

Front Behav Neurosci. 2017 Dec 20;11:252. doi: 10.3389/fnbeh.2017.00252. eCollection 2017.

37.

The global impact of the DRACMA guidelines cow's milk allergy clinical practice.

Fiocchi A, Schunemann H, Ansotegui I, Assa'ad A, Bahna S, Canani RB, Bozzola M, Dahdah L, Dupont C, Ebisawa M, Galli E, Li H, Kamenwa R, Lack G, Martelli A, Pawankar R, Said M, Sánchez-Borges M, Sampson H, Shamir R, Spergel J, Terracciano L, Vandenplas Y, Venter C, Waserman S, Wong G, Brozek J.

World Allergy Organ J. 2018 Jan 4;11(1):2. doi: 10.1186/s40413-017-0179-7. eCollection 2018. Review.

38.

Randomised study found that improved nutritional intake was associated with better sleep patterns in prepubertal children who were both short and lean.

Yackobovitch-Gavan M, Machtei A, Lazar L, Shamir R, Phillip M, Lebenthal Y.

Acta Paediatr. 2018 Apr;107(4):666-671. doi: 10.1111/apa.14205. Epub 2018 Jan 17.

PMID:
29280191
39.

Long-Term Outcomes After Primary Bowel Resection in Pediatric-Onset Crohn's Disease.

Rinawi F, Zevit N, Eliakim R, Niv Y, Shamir R, Assa A.

Inflamm Bowel Dis. 2017 Dec 19;24(1):149-158. doi: 10.1093/ibd/izx030.

PMID:
29272491
40.

Reconstructing cancer karyotypes from short read data: the half empty and half full glass.

Eitan R, Shamir R.

BMC Bioinformatics. 2017 Nov 15;18(1):488. doi: 10.1186/s12859-017-1929-9.

41.

Prevalence of Functional Gastrointestinal Disorders in Children and Adolescents in the Mediterranean Region of Europe.

Scarpato E, Kolacek S, Jojkic-Pavkov D, Konjik V, Živković N, Roman E, Kostovski A, Zdraveska N, Altamimi E, Papadopoulou A, Karagiozoglou-Lampoudi T, Shamir R, Bar Lev MR, Koleilat A, Mneimneh S, Bruzzese D, Leis R, Staiano A; MEAP Group.

Clin Gastroenterol Hepatol. 2018 Jun;16(6):870-876. doi: 10.1016/j.cgh.2017.11.005. Epub 2017 Nov 9.

PMID:
29129667
42.

Intestinal anti-transglutaminase 2 immunoglobulin A deposits in children at risk for coeliac disease (CD): data from the PreventCD study.

Borrelli M, Maglio M, Korponay-Szabó IR, Vass V, Mearin ML, Meijer C, Niv-Drori H, Ribes-Koninckx C, Roca M, Shamir R, Troncone R, Auricchio R.

Clin Exp Immunol. 2018 Mar;191(3):311-317. doi: 10.1111/cei.13078. Epub 2017 Dec 1.

PMID:
29114847
43.

Food restriction followed by refeeding with a casein- or whey-based diet differentially affects the gut microbiota of pre-pubertal male rats.

Masarwi M, Solnik HI, Phillip M, Yaron S, Shamir R, Pasmanic-Chor M, Gat-Yablonski G.

J Nutr Biochem. 2018 Jan;51:27-39. doi: 10.1016/j.jnutbio.2017.08.014. Epub 2017 Sep 14.

PMID:
29091812
44.

Faucet: streaming de novo assembly graph construction.

Rozov R, Goldshlager G, Halperin E, Shamir R.

Bioinformatics. 2018 Jan 1;34(1):147-154. doi: 10.1093/bioinformatics/btx471.

45.

Designing small universal k-mer hitting sets for improved analysis of high-throughput sequencing.

Orenstein Y, Pellow D, Marçais G, Shamir R, Kingsford C.

PLoS Comput Biol. 2017 Oct 2;13(10):e1005777. doi: 10.1371/journal.pcbi.1005777. eCollection 2017 Oct.

46.

The Long-Term Predictive Properties of the Paris Classification in Paediatric Inflammatory Bowel Disease Patients.

Assa A, Rinawi F, Shamir R.

J Crohns Colitis. 2018 Jan 5;12(1):39-47. doi: 10.1093/ecco-jcc/jjx125.

PMID:
28961726
47.

Analysis of blood-based gene expression in idiopathic Parkinson disease.

Shamir R, Klein C, Amar D, Vollstedt EJ, Bonin M, Usenovic M, Wong YC, Maver A, Poths S, Safer H, Corvol JC, Lesage S, Lavi O, Deuschl G, Kuhlenbaeumer G, Pawlack H, Ulitsky I, Kasten M, Riess O, Brice A, Peterlin B, Krainc D.

Neurology. 2017 Oct 17;89(16):1676-1683. doi: 10.1212/WNL.0000000000004516. Epub 2017 Sep 15.

PMID:
28916538
48.

Improving the performance of minimizers and winnowing schemes.

Marçais G, Pellow D, Bork D, Orenstein Y, Shamir R, Kingsford C.

Bioinformatics. 2017 Jul 15;33(14):i110-i117. doi: 10.1093/bioinformatics/btx235.

49.

Phenotypic Features and Longterm Outcomes of Pediatric Inflammatory Bowel Disease Patients with Arthritis and Arthralgia.

Nir O, Rinawi F, Amarilyo G, Harel L, Shamir R, Assa A.

J Rheumatol. 2017 Nov;44(11):1636-1643. doi: 10.3899/jrheum.170168. Epub 2017 Sep 1.

PMID:
28864649
50.

A Linear-Time Algorithm for the Copy Number Transformation Problem.

Zeira R, Zehavi M, Shamir R.

J Comput Biol. 2017 Dec;24(12):1179-1194. doi: 10.1089/cmb.2017.0060. Epub 2017 Aug 24.

PMID:
28837352

Supplemental Content

Loading ...
Support Center