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Items: 23

1.

Amikacin exposure and susceptibility of macrolide-resistant Mycobacterium abscessus.

Daniel-Wayman S, Shallom S, Azeem N, Olivier KN, Zelazny AM, Prevots DR.

ERJ Open Res. 2019 May 10;5(2). pii: 00154-2018. doi: 10.1183/23120541.00154-2018. eCollection 2019 Apr.

2.

Transcriptional Response of Respiratory Epithelium to Nontuberculous Mycobacteria.

Matsuyama M, Martins AJ, Shallom S, Kamenyeva O, Kashyap A, Sampaio EP, Kabat J, Olivier KN, Zelazny AM, Tsang JS, Holland SM.

Am J Respir Cell Mol Biol. 2018 Feb;58(2):241-252. doi: 10.1165/rcmb.2017-0218OC.

3.

Clonal Diversification and Changes in Lipid Traits and Colony Morphology in Mycobacterium abscessus Clinical Isolates.

Park IK, Hsu AP, Tettelin H, Shallom SJ, Drake SK, Ding L, Wu UI, Adamo N, Prevots DR, Olivier KN, Holland SM, Sampaio EP, Zelazny AM.

J Clin Microbiol. 2015 Nov;53(11):3438-47. doi: 10.1128/JCM.02015-15. Epub 2015 Aug 19.

4.

New Real-Time PCR Assays for Detection of Inducible and Acquired Clarithromycin Resistance in the Mycobacterium abscessus Group.

Shallom SJ, Moura NS, Olivier KN, Sampaio EP, Holland SM, Zelazny AM.

J Clin Microbiol. 2015 Nov;53(11):3430-7. doi: 10.1128/JCM.01714-15. Epub 2015 Aug 12.

5.

High-level relatedness among Mycobacterium abscessus subsp. massiliense strains from widely separated outbreaks.

Tettelin H, Davidson RM, Agrawal S, Aitken ML, Shallom S, Hasan NA, Strong M, de Moura VC, De Groote MA, Duarte RS, Hine E, Parankush S, Su Q, Daugherty SC, Fraser CM, Brown-Elliott BA, Wallace RJ Jr, Holland SM, Sampaio EP, Olivier KN, Jackson M, Zelazny AM.

Emerg Infect Dis. 2014 Mar;20(3):364-71. doi: 10.3201/eid2003.131106.

6.

Inhaled amikacin for treatment of refractory pulmonary nontuberculous mycobacterial disease.

Olivier KN, Shaw PA, Glaser TS, Bhattacharyya D, Fleshner M, Brewer CC, Zalewski CK, Folio LR, Siegelman JR, Shallom S, Park IK, Sampaio EP, Zelazny AM, Holland SM, Prevots DR.

Ann Am Thorac Soc. 2014 Jan;11(1):30-5. doi: 10.1513/AnnalsATS.201307-231OC.

7.

New rapid scheme for distinguishing the subspecies of the Mycobacterium abscessus group and identifying Mycobacterium massiliense isolates with inducible clarithromycin resistance.

Shallom SJ, Gardina PJ, Myers TG, Sebastian Y, Conville P, Calhoun LB, Tettelin H, Olivier KN, Uzel G, Sampaio EP, Holland SM, Zelazny AM.

J Clin Microbiol. 2013 Sep;51(9):2943-9. doi: 10.1128/JCM.01132-13. Epub 2013 Jun 26.

8.

Improved variation calling via an iterative backbone remapping and local assembly method for bacterial genomes.

Tae H, Settlage RE, Shallom S, Bavarva JH, Preston D, Hawkins GN, Adams LG, Garner HR.

Genomics. 2012 Nov;100(5):271-6. doi: 10.1016/j.ygeno.2012.07.015. Epub 2012 Aug 10.

9.

Comparison of genome diversity of Brucella spp. field isolates using Universal Bio-signature Detection Array and whole genome sequencing reveals limitations of current diagnostic methods.

Shallom SJ, Tae H, Sarmento L, Preston D, McIver L, Franck C, Dickerman A, Adams LG, Garner HR.

Gene. 2012 Nov 1;509(1):142-8. doi: 10.1016/j.gene.2012.07.073. Epub 2012 Aug 8.

PMID:
22967710
10.

Complete genome sequence of Brucella suis VBI22, isolated from bovine milk.

Tae H, Shallom S, Settlage R, Hawkins GN, Adams LG, Garner HR.

J Bacteriol. 2012 Feb;194(4):910. doi: 10.1128/JB.06556-11.

11.

Revised genome sequence of Brucella suis 1330.

Tae H, Shallom S, Settlage R, Preston D, Adams LG, Garner HR.

J Bacteriol. 2011 Nov;193(22):6410. doi: 10.1128/JB.06181-11.

12.

A species independent universal bio-detection microarray for pathogen forensics and phylogenetic classification of unknown microorganisms.

Shallom SJ, Weeks JN, Galindo CL, McIver L, Sun Z, McCormick J, Adams LG, Garner HR.

BMC Microbiol. 2011 Jun 14;11:132. doi: 10.1186/1471-2180-11-132.

13.

Investigating the genome diversity of B. cereus and evolutionary aspects of B. anthracis emergence.

Papazisi L, Rasko DA, Ratnayake S, Bock GR, Remortel BG, Appalla L, Liu J, Dracheva T, Braisted JC, Shallom S, Jarrahi B, Snesrud E, Ahn S, Sun Q, Rilstone J, Okstad OA, Kolstø AB, Fleischmann RD, Peterson SN.

Genomics. 2011 Jul;98(1):26-39. doi: 10.1016/j.ygeno.2011.03.008. Epub 2011 Apr 5.

14.

Host-interactive genes in Amerindian Helicobacter pylori diverge from their Old World homologs and mediate inflammatory responses.

Mane SP, Dominguez-Bello MG, Blaser MJ, Sobral BW, Hontecillas R, Skoneczka J, Mohapatra SK, Crasta OR, Evans C, Modise T, Shallom S, Shukla M, Varon C, Mégraud F, Maldonado-Contreras AL, Williams KP, Bassaganya-Riera J.

J Bacteriol. 2010 Jun;192(12):3078-92. doi: 10.1128/JB.00063-10. Epub 2010 Apr 16.

15.

A correlation analysis of protein characteristics associated with genome-wide high throughput expression and solubility of Streptococcus pneumoniae proteins.

Kwon K, Pieper R, Shallom S, Grose C, Kwon E, Do Y, Latham S, Alami H, Huang ST, Gatlin C, Papazisi L, Fleischmann R, Peterson S.

Protein Expr Purif. 2007 Oct;55(2):368-78. Epub 2007 Jul 10.

PMID:
17703947
16.

Genome sequence of Theileria parva, a bovine pathogen that transforms lymphocytes.

Gardner MJ, Bishop R, Shah T, de Villiers EP, Carlton JM, Hall N, Ren Q, Paulsen IT, Pain A, Berriman M, Wilson RJ, Sato S, Ralph SA, Mann DJ, Xiong Z, Shallom SJ, Weidman J, Jiang L, Lynn J, Weaver B, Shoaibi A, Domingo AR, Wasawo D, Crabtree J, Wortman JR, Haas B, Angiuoli SV, Creasy TH, Lu C, Suh B, Silva JC, Utterback TR, Feldblyum TV, Pertea M, Allen J, Nierman WC, Taracha EL, Salzberg SL, White OR, Fitzhugh HA, Morzaria S, Venter JC, Fraser CM, Nene V.

Science. 2005 Jul 1;309(5731):134-7.

17.

Formation and composition of the Bacillus anthracis endospore.

Liu H, Bergman NH, Thomason B, Shallom S, Hazen A, Crossno J, Rasko DA, Ravel J, Read TD, Peterson SN, Yates J 3rd, Hanna PC.

J Bacteriol. 2004 Jan;186(1):164-78.

18.

Sequence of Plasmodium falciparum chromosomes 2, 10, 11 and 14.

Gardner MJ, Shallom SJ, Carlton JM, Salzberg SL, Nene V, Shoaibi A, Ciecko A, Lynn J, Rizzo M, Weaver B, Jarrahi B, Brenner M, Parvizi B, Tallon L, Moazzez A, Granger D, Fujii C, Hansen C, Pederson J, Feldblyum T, Peterson J, Suh B, Angiuoli S, Pertea M, Allen J, Selengut J, White O, Cummings LM, Smith HO, Adams MD, Venter JC, Carucci DJ, Hoffman SL, Fraser CM.

Nature. 2002 Oct 3;419(6906):531-4.

PMID:
12368868
19.

Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii.

Carlton JM, Angiuoli SV, Suh BB, Kooij TW, Pertea M, Silva JC, Ermolaeva MD, Allen JE, Selengut JD, Koo HL, Peterson JD, Pop M, Kosack DS, Shumway MF, Bidwell SL, Shallom SJ, van Aken SE, Riedmuller SB, Feldblyum TV, Cho JK, Quackenbush J, Sedegah M, Shoaibi A, Cummings LM, Florens L, Yates JR, Raine JD, Sinden RE, Harris MA, Cunningham DA, Preiser PR, Bergman LW, Vaidya AB, van Lin LH, Janse CJ, Waters AP, Smith HO, White OR, Salzberg SL, Venter JC, Fraser CM, Hoffman SL, Gardner MJ, Carucci DJ.

Nature. 2002 Oct 3;419(6906):512-9.

PMID:
12368865
20.

Genome sequence of the human malaria parasite Plasmodium falciparum.

Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, Carlton JM, Pain A, Nelson KE, Bowman S, Paulsen IT, James K, Eisen JA, Rutherford K, Salzberg SL, Craig A, Kyes S, Chan MS, Nene V, Shallom SJ, Suh B, Peterson J, Angiuoli S, Pertea M, Allen J, Selengut J, Haft D, Mather MW, Vaidya AB, Martin DM, Fairlamb AH, Fraunholz MJ, Roos DS, Ralph SA, McFadden GI, Cummings LM, Subramanian GM, Mungall C, Venter JC, Carucci DJ, Hoffman SL, Newbold C, Davis RW, Fraser CM, Barrell B.

Nature. 2002 Oct 3;419(6906):498-511.

21.

Functional characterization of the acyl carrier protein (PfACP) and beta-ketoacyl ACP synthase III (PfKASIII) from Plasmodium falciparum.

Waters NC, Kopydlowski KM, Guszczynski T, Wei L, Sellers P, Ferlan JT, Lee PJ, Li Z, Woodard CL, Shallom S, Gardner MJ, Prigge ST.

Mol Biochem Parasitol. 2002 Aug 28;123(2):85-94.

PMID:
12270624
22.
23.

Chromosome 2 sequence of the human malaria parasite Plasmodium falciparum.

Gardner MJ, Tettelin H, Carucci DJ, Cummings LM, Aravind L, Koonin EV, Shallom S, Mason T, Yu K, Fujii C, Pederson J, Shen K, Jing J, Aston C, Lai Z, Schwartz DC, Pertea M, Salzberg S, Zhou L, Sutton GG, Clayton R, White O, Smith HO, Fraser CM, Adams MD, Venter JC, Hoffman SL.

Science. 1998 Nov 6;282(5391):1126-32. Erratum in: Science 1998 Dec 4;282(5395):1827.

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