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Items: 1 to 50 of 52

1.

Novel Insights Into the Spread of Enteric Pathogens Using Genomics.

Domman D, Ruis C, Dorman MJ, Shakya M, Chain PSG.

J Infect Dis. 2019 Sep 20. pii: jiz220. doi: 10.1093/infdis/jiz220. [Epub ahead of print] No abstract available.

PMID:
31538189
2.

NCBI's Virus Discovery Hackathon: Engaging Research Communities to Identify Cloud Infrastructure Requirements.

Connor R, Brister R, Buchmann JP, Deboutte W, Edwards R, Martí-Carreras J, Tisza M, Zalunin V, Andrade-Martínez J, Cantu A, D'Amour M, Efremov A, Fleischmann L, Forero-Junco L, Garmaeva S, Giluso M, Glickman C, Henderson M, Kellman B, Kristensen D, Leubsdorf C, Levi K, Levi S, Pakala S, Peddu V, Ponsero A, Ribeiro E, Roy F, Rutter L, Saha S, Shakya M, Shean R, Miller M, Tully B, Turkington C, Youens-Clark K, Vanmechelen B, Busby B.

Genes (Basel). 2019 Sep 16;10(9). pii: E714. doi: 10.3390/genes10090714.

3.

Reduced stability and pH-dependent activity of a common obesity-linked PCSK1 polymorphism, N221D.

Jarvela TS, Gahlot S, Shakya M, Bachor T, White A, Low MJ, Lindberg I.

Endocrinology. 2019 Sep 2. pii: en.2019-00418. doi: 10.1210/en.2019-00418. [Epub ahead of print]

PMID:
31504391
4.

Acaricide resistance in Rhipicephalus microplus collected from selected districts of Madhya Pradesh, Uttar Pradesh and Punjab states of India.

Sagar SV, Saini K, Sharma AK, Kumar S, Kumar R, Fular A, Shakya M, Upadhaya D, Nagar G, C S, Samanta S, Kumar S, Ghosh S.

Trop Anim Health Prod. 2019 Aug 28. doi: 10.1007/s11250-019-02048-0. [Epub ahead of print]

PMID:
31463660
5.

Hindbrain Estrogen Receptor Regulation of Ventromedial Hypothalamic Glycogen Metabolism and Glucoregulatory Transmitter Expression in the Hypoglycemic Female Rat.

Napit PR, Ali MH, Shakya M, Mandal SK, Bheemanapally K, Mahmood ASMH, Ibrahim MMH, Briski KP.

Neuroscience. 2019 Jul 15;411:211-221. doi: 10.1016/j.neuroscience.2019.05.007. Epub 2019 May 12.

PMID:
31085279
6.

Logistics of Implementing a Large-scale Typhoid Vaccine Trial in Kathmandu, Nepal.

Colin-Jones R, Shakya M, Voysey M, Theiss-Nyland K, Smith N, Pant D, Liu X, Tonks S, Mazur O, Farooq YG, Kelly S, Adhikari A, Dongol S, Karkey A, Shrestha S, Basnyat B, Pollard AJ.

Clin Infect Dis. 2019 Mar 7;68(Supplement_2):S138-S145. doi: 10.1093/cid/ciy1125.

7.

Assessing the Impact of a Vi-polysaccharide Conjugate Vaccine in Preventing Typhoid Infections Among Nepalese Children: A Protocol for a Phase III, Randomized Control Trial.

Theiss-Nyland K, Shakya M, Colin-Jones R, Voysey M, Smith N, Karkey A, Dongol S, Pant D, Farooq YG, Neuzil KM, Shrestha S, Basnyat B, Pollard AJ.

Clin Infect Dis. 2019 Mar 7;68(Supplement_2):S67-S73. doi: 10.1093/cid/ciy1106.

9.

Remedial Treatment of Corroded Iron Objects by Environmental Aeromonas Isolates.

Kooli WM, Junier T, Shakya M, Monachon M, Davenport KW, Vaideeswaran K, Vernudachi A, Marozau I, Monrouzeau T, Gleasner CD, McMurry K, Lienhard R, Rufener L, Perret JL, Sereda O, Chain PS, Joseph E, Junier P.

Appl Environ Microbiol. 2019 Jan 23;85(3). pii: e02042-18. doi: 10.1128/AEM.02042-18. Print 2019 Feb 1.

10.

Pubic lice infestation in man from Mhow, Madhya Pradesh.

Shakya M, Jayraw AK, Singh M.

J Parasit Dis. 2018 Sep;42(3):402-404. doi: 10.1007/s12639-018-1015-x. Epub 2018 Jun 8.

11.

Clinical Evaluation of Nd:YAG Laser With and Without Dentin Bonding Agent for the Treatment of Occlusal Hypersensitivity.

Guo L, Kayastha PK, Chen L, Shakya M, Chen X.

Oper Dent. 2019 May/Jun;44(3):227-234. doi: 10.2341/17-265-C. Epub 2018 Aug 24.

PMID:
30142042
12.

High expression of TACC2 in hepatocellular carcinoma is associated with poor prognosis.

Shakya M, Zhou A, Dai D, Zhong Q, Zhou Z, Zhang Y, Li X, Bholee AK, Chen M.

Cancer Biomark. 2018;22(4):611-619. doi: 10.3233/CBM-170091.

13.

Effects of estradiol on lactoprivic signaling of the hindbrain upon the contraregulatory hormonal response and metabolic neuropeptide synthesis in hypoglycemic female rats.

Mandal SK, Shrestha PK, Alenazi FSH, Shakya M, Alhamami HN, Briski KP.

Neuropeptides. 2018 Aug;70:37-46. doi: 10.1016/j.npep.2018.05.004. Epub 2018 May 17.

14.

Adenomatous ductal proliferation/hyperplasia in the parotid gland associated without any other pathological lesions; a report and survey of the literatures.

Adhikari BR, Nishimura M, Takimoto K, Harada F, Onishi A, Hiraki D, Paudel D, Neopane P, Utsunomiya M, Morikawa T, Yoshida K, Sato J, Shakya M, Nakayama E, Nagayasu H, Abiko Y.

Med Mol Morphol. 2018 Dec;51(4):244-248. doi: 10.1007/s00795-018-0192-0. Epub 2018 May 15.

PMID:
29766278
15.
16.

Tuberculosis in Staff and Students of Patan Hospital.

Shrestha P, Shakya M, Caws M, Shrestha S, Karki B, Shrestha S, Karki DB, Maharjan B, Shrestha B, Arjyal A, Karkey A, Prajapati KG, Basnyat B.

J Nepal Health Res Counc. 2018 Jan 1;15(3):268-274.

PMID:
29353901
17.
18.

Insights into origin and evolution of α-proteobacterial gene transfer agents.

Shakya M, Soucy SM, Zhaxybayeva O.

Virus Evol. 2017 Dec 7;3(2):vex036. doi: 10.1093/ve/vex036. eCollection 2017 Jul.

19.

Sex Differences and Role of Estradiol in Hypoglycemia-Associated Counter-Regulation.

Briski KP, Alhamami HN, Alshamrani A, Mandal SK, Shakya M, Ibrahim MHH.

Adv Exp Med Biol. 2017;1043:359-383. doi: 10.1007/978-3-319-70178-3_17. Review.

PMID:
29224103
20.

Assessment and Translation of the Antibody-in-Lymphocyte Supernatant (ALS) Assay to Improve the Diagnosis of Enteric Fever in Two Controlled Human Infection Models and an Endemic Area of Nepal.

Darton TC, Jones C, Dongol S, Voysey M, Blohmke CJ, Shrestha R, Karkey A, Shakya M, Arjyal A, Waddington CS, Gibani M, Carter MJ, Basnyat B, Baker S, Pollard AJ.

Front Microbiol. 2017 Oct 23;8:2031. doi: 10.3389/fmicb.2017.02031. eCollection 2017.

21.

Role of hindbrain adenosine 5'-monophosphate-activated protein kinase (AMPK) in hypothalamic AMPK and metabolic neuropeptide adaptation to recurring insulin-induced hypoglycemia in the male rat.

Mandal SK, Shrestha PK, Alenazi FSH, Shakya M, Alhamami H, Briski KP.

Neuropeptides. 2017 Dec;66:25-35. doi: 10.1016/j.npep.2017.08.001. Epub 2017 Aug 9.

PMID:
28823463
22.

The STRATAA study protocol: a programme to assess the burden of enteric fever in Bangladesh, Malawi and Nepal using prospective population census, passive surveillance, serological studies and healthcare utilisation surveys.

Darton TC, Meiring JE, Tonks S, Khan MA, Khanam F, Shakya M, Thindwa D, Baker S, Basnyat B, Clemens JD, Dougan G, Dolecek C, Dunstan SJ, Gordon MA, Heyderman RS, Holt KE, Pitzer VE, Qadri F, Zaman K, Pollard AJ; STRATAA Study Consortium.

BMJ Open. 2017 Jul 2;7(6):e016283. doi: 10.1136/bmjopen-2017-016283.

23.

Immunohistochemical evaluation of Klotho and DNA methyltransferase 3a in oral squamous cell carcinomas.

Adhikari BR, Uehara O, Matsuoka H, Takai R, Harada F, Utsunomiya M, Chujo T, Morikawa T, Shakya M, Yoshida K, Sato J, Arakawa T, Nishimura M, Nagayasu H, Chiba I, Abiko Y.

Med Mol Morphol. 2017 Sep;50(3):155-160. doi: 10.1007/s00795-017-0156-9. Epub 2017 Mar 16.

PMID:
28303350
25.

Sorption of zinc onto elemental selenium nanoparticles immobilized in Phanerochaete chrysosporium pellets.

Espinosa-Ortiz EJ, Shakya M, Jain R, Rene ER, van Hullebusch ED, Lens PN.

Environ Sci Pollut Res Int. 2016 Nov;23(21):21619-21630. Epub 2016 Aug 13.

PMID:
27519902
26.

Functional and Evolutionary Characterization of a Gene Transfer Agent's Multilocus "Genome".

Hynes AP, Shakya M, Mercer RG, Grüll MP, Bown L, Davidson F, Steffen E, Matchem H, Peach ME, Berger T, Grebe K, Zhaxybayeva O, Lang AS.

Mol Biol Evol. 2016 Oct;33(10):2530-43. doi: 10.1093/molbev/msw125. Epub 2016 Jun 24.

27.

Spontaneous hypoglycaemia in a patient with Graves' disease.

Paudyal B, Shakya M, Basnyat B.

BMJ Case Rep. 2016 Mar 22;2016. pii: bcr2016214801. doi: 10.1136/bcr-2016-214801.

28.

Osseous choristoma of the tongue: two case reports.

Adhikari BR, Sato J, Morikawa T, Obara-Itoh J, Utsunomiya M, Harada F, Chujo T, Takai R, Yoshida K, Nishimura M, Shakya M, Nagayasu H, Abiko Y.

J Med Case Rep. 2016 Mar 17;10:59. doi: 10.1186/s13256-016-0840-8.

29.

Paradoxical reaction to antitubercular treatment in a case of pulmonary tuberculosis.

Paudyal B, Paudel K, Shakya M, Basnyat B.

BMJ Case Rep. 2016 Feb 17;2016. pii: bcr2015214285. doi: 10.1136/bcr-2015-214285.

30.

Gatifloxacin versus ceftriaxone for uncomplicated enteric fever in Nepal: an open-label, two-centre, randomised controlled trial.

Arjyal A, Basnyat B, Nhan HT, Koirala S, Giri A, Joshi N, Shakya M, Pathak KR, Mahat SP, Prajapati SP, Adhikari N, Thapa R, Merson L, Gajurel D, Lamsal K, Lamsal D, Yadav BK, Shah G, Shrestha P, Dongol S, Karkey A, Thompson CN, Thieu NTV, Thanh DP, Baker S, Thwaites GE, Wolbers M, Dolecek C.

Lancet Infect Dis. 2016 May;16(5):535-545. doi: 10.1016/S1473-3099(15)00530-7. Epub 2016 Jan 20.

31.

A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling.

D'Amore R, Ijaz UZ, Schirmer M, Kenny JG, Gregory R, Darby AC, Shakya M, Podar M, Quince C, Hall N.

BMC Genomics. 2016 Jan 14;17:55. doi: 10.1186/s12864-015-2194-9.

32.

Dynamics of MDR Enterobacter cloacae outbreaks in a neonatal unit in Nepal: insights using wider sampling frames and next-generation sequencing.

Stoesser N, Sheppard AE, Shakya M, Sthapit B, Thorson S, Giess A, Kelly D, Pollard AJ, Peto TE, Walker AS, Crook DW.

J Antimicrob Chemother. 2015 Apr;70(4):1008-15. doi: 10.1093/jac/dku521. Epub 2015 Jan 3.

33.

Genome sequencing of an extended series of NDM-producing Klebsiella pneumoniae isolates from neonatal infections in a Nepali hospital characterizes the extent of community- versus hospital-associated transmission in an endemic setting.

Stoesser N, Giess A, Batty EM, Sheppard AE, Walker AS, Wilson DJ, Didelot X, Bashir A, Sebra R, Kasarskis A, Sthapit B, Shakya M, Kelly D, Pollard AJ, Peto TE, Crook DW, Donnelly P, Thorson S, Amatya P, Joshi S.

Antimicrob Agents Chemother. 2014 Dec;58(12):7347-57. doi: 10.1128/AAC.03900-14. Epub 2014 Sep 29.

34.

Improved yield of high molecular weight DNA coincides with increased microbial diversity access from iron oxide cemented sub-surface clay environments.

Hurt RA Jr, Robeson MS 2nd, Shakya M, Moberly JG, Vishnivetskaya TA, Gu B, Elias DA.

PLoS One. 2014 Jul 17;9(7):e102826. doi: 10.1371/journal.pone.0102826. eCollection 2014.

35.

Comparative evolutionary analysis of cell cycle proteins networks in fission and budding yeast.

Singh PK, Shakya M.

Cell Biochem Biophys. 2014 Nov;70(2):1167-75. doi: 10.1007/s12013-014-0037-y.

PMID:
24906232
36.

Subolesin: a candidate vaccine antigen for the control of cattle tick infestations in Indian situation.

Shakya M, Kumar B, Nagar G, de la Fuente J, Ghosh S.

Vaccine. 2014 Jun 12;32(28):3488-94. doi: 10.1016/j.vaccine.2014.04.053. Epub 2014 Apr 30.

PMID:
24795229
37.

Gatifloxacin versus ofloxacin for the treatment of uncomplicated enteric fever in Nepal: an open-label, randomized, controlled trial.

Koirala S, Basnyat B, Arjyal A, Shilpakar O, Shrestha K, Shrestha R, Shrestha UM, Agrawal K, Koirala KD, Thapa SD, Karkey A, Dongol S, Giri A, Shakya M, Pathak KR, Campbell J, Baker S, Farrar J, Wolbers M, Dolecek C.

PLoS Negl Trop Dis. 2013 Oct 31;7(10):e2523. doi: 10.1371/journal.pntd.0002523. eCollection 2013.

38.

A multifactor analysis of fungal and bacterial community structure in the root microbiome of mature Populus deltoides trees.

Shakya M, Gottel N, Castro H, Yang ZK, Gunter L, Labbé J, Muchero W, Bonito G, Vilgalys R, Tuskan G, Podar M, Schadt CW.

PLoS One. 2013 Oct 16;8(10):e76382. doi: 10.1371/journal.pone.0076382. eCollection 2013.

39.

Aetiologies of central nervous system infections in adults in Kathmandu, Nepal: a prospective hospital-based study.

Giri A, Arjyal A, Koirala S, Karkey A, Dongol S, Thapa SD, Shilpakar O, Shrestha R, van Tan L, Thi Thuy Chinh BN, Krishna K C R, Pathak KR, Shakya M, Farrar J, Van Doorn HR, Basnyat B.

Sci Rep. 2013;3:2382. doi: 10.1038/srep02382.

40.

Evaluation of an electricity-free, culture-based approach for detecting typhoidal Salmonella bacteremia during enteric fever in a high burden, resource-limited setting.

Andrews JR, Prajapati KG, Eypper E, Shrestha P, Shakya M, Pathak KR, Joshi N, Tiwari P, Risal M, Koirala S, Karkey A, Dongol S, Wen S, Smith AB, Maru D, Basnyat B, Baker S, Farrar J, Ryan ET, Hohmann E, Arjyal A.

PLoS Negl Trop Dis. 2013 Jun 27;7(6):e2292. doi: 10.1371/journal.pntd.0002292. Print 2013.

41.

Investigation of the effects of hydrogenotrophic denitrification and anammox on the improvement of the quality of the drinking water supply system.

Khanitchaidecha W, Koshy P, Kamei T, Shakya M, Kazama F.

J Environ Sci Health A Tox Hazard Subst Environ Eng. 2013;48(12):1533-42. doi: 10.1080/10934529.2013.797249.

PMID:
23802162
42.

Comparative metagenomic and rRNA microbial diversity characterization using archaeal and bacterial synthetic communities.

Shakya M, Quince C, Campbell JH, Yang ZK, Schadt CW, Podar M.

Environ Microbiol. 2013 Jun;15(6):1882-99. doi: 10.1111/1462-2920.12086. Epub 2013 Feb 6.

43.

Inter-field variability in the microbial communities of hydrothermal vent deposits from a back-arc basin.

Flores GE, Shakya M, Meneghin J, Yang ZK, Seewald JS, Geoff Wheat C, Podar M, Reysenbach AL.

Geobiology. 2012 Jul;10(4):333-46. doi: 10.1111/j.1472-4669.2012.00325.x. Epub 2012 Mar 23.

PMID:
22443386
44.

Development of an attached growth reactor for NH₄-N removal at a drinking water supply system in Kathmandu Valley, Nepal.

Khanitchaidecha W, Shakya M, Nakano Y, Tanaka Y, Kazama F.

J Environ Sci Health A Tox Hazard Subst Environ Eng. 2012;47(5):734-43. doi: 10.1080/10934529.2012.660097.

PMID:
22416868
45.

Role of physicochemical properties in the estimation of skin permeability: in vitro data assessment by Partial Least-Squares Regression.

Chauhan P, Shakya M.

SAR QSAR Environ Res. 2010 Jul;21(5-6):481-94. doi: 10.1080/1062936X.2010.501819.

PMID:
20818583
46.
47.

Protein interaction network analysis--approach for potential drug target identification in Mycobacterium tuberculosis.

Kushwaha SK, Shakya M.

J Theor Biol. 2010 Jan 21;262(2):284-94. doi: 10.1016/j.jtbi.2009.09.029. Epub 2009 Oct 13.

PMID:
19833135
48.

PINAT1.0: protein interaction network analysis tool.

Kushwaha SK, Shakya M.

Bioinformation. 2009 Jul 27;3(10):419-21.

49.

Modeling signaling pathways leading to wrinkle formation: identification of the skin aging target.

Chauhan P, Shakya M.

Indian J Dermatol Venereol Leprol. 2009 Sep-Oct;75(5):463-8. doi: 10.4103/0378-6323.55388.

50.

Model based design of inhibitors for c-jun.

Chauhan P, Shakya M.

Bioinformation. 2009 Nov 26;4(6):223-8.

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