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Items: 1 to 50 of 265

1.

Probabilistic cell-type assignment of single-cell RNA-seq for tumor microenvironment profiling.

Zhang AW, O'Flanagan C, Chavez EA, Lim JLP, Ceglia N, McPherson A, Wiens M, Walters P, Chan T, Hewitson B, Lai D, Mottok A, Sarkozy C, Chong L, Aoki T, Wang X, Weng AP, McAlpine JN, Aparicio S, Steidl C, Campbell KR, Shah SP.

Nat Methods. 2019 Sep 9. doi: 10.1038/s41592-019-0529-1. [Epub ahead of print]

PMID:
31501550
2.

Comparison of three antimicrobial strategies in diabetic foot infections post-amputation.

Shah SP, Negrete A, Self T, Bergeron J, Twilla JD.

Ther Adv Infect Dis. 2019 Jul 17;6:2049936119864542. doi: 10.1177/2049936119864542. eCollection 2019 Jan-Dec.

3.

Molecular profiling and molecular classification of endometrioid ovarian carcinomas.

Cybulska P, Paula ADC, Tseng J, Leitao MM Jr, Bashashati A, Huntsman DG, Nazeran TM, Aghajanian C, Abu-Rustum NR, DeLair DF, Shah SP, Weigelt B.

Gynecol Oncol. 2019 Sep;154(3):516-523. doi: 10.1016/j.ygyno.2019.07.012. Epub 2019 Jul 21.

PMID:
31340883
4.

Adoptive T-cell therapy for pediatric cytomegalovirus-associated retinitis.

Seo S, Smith C, Fraser C, Patheja R, Shah SP, Rehan S, Crooks P, Neller MA, Khanna R.

Blood Adv. 2019 Jun 11;3(11):1774-1777. doi: 10.1182/bloodadvances.2019000121. No abstract available.

5.

Patterns of Electrolyte Testing at Children's Hospitals for Common Inpatient Diagnoses.

Tchou MJ, Hall M, Shah SS, Johnson DP, Schroeder AR, Antoon JW, Genies MC, Quinonez R, Miller CW, Shah SP, Brady PW; Pediatric Research in Inpatient Settings (PRIS) Network.

Pediatrics. 2019 Jul;144(1). pii: e20181644. doi: 10.1542/peds.2018-1644. Epub 2019 Jun 6.

PMID:
31171587
6.

Phenytoin toxicity due to drug interaction with doxepin and changes in patient factors.

Shah SP, Abousaud A, Nair RR, Bergeron J, Cutshall BT.

Nurse Pract. 2019 Jun;44(6):13-16. doi: 10.1097/01.NPR.0000558162.07091.09. No abstract available.

PMID:
31107804
7.

Exploring the Utility of Noninvasive Type 2 Inflammatory Markers for Prediction of Severe Asthma Exacerbations in Children and Adolescents.

Shah SP, Grunwell J, Shih J, Stephenson S, Fitzpatrick AM.

J Allergy Clin Immunol Pract. 2019 May 14. pii: S2213-2198(19)30451-9. doi: 10.1016/j.jaip.2019.04.043. [Epub ahead of print]

PMID:
31100552
8.

ONE-YEAR OUTCOMES OF A NOVEL SURGICAL TECHNIQUE FOR SUTURELESS INTRASCLERAL FIXATION OF A THREE-PIECE INTRAOCULAR LENS USING A 30-GAUGE NEEDLE.

Bonnell AC, Polo RN, Shah SP, Fine HF, Prenner JL.

Retina. 2019 May 14. doi: 10.1097/IAE.0000000000002560. [Epub ahead of print]

PMID:
31095064
9.

Targeting Hypoxia-Induced Carbonic Anhydrase IX Enhances Immune-Checkpoint Blockade Locally and Systemically.

Chafe SC, McDonald PC, Saberi S, Nemirovsky O, Venkateswaran G, Burugu S, Gao D, Delaidelli A, Kyle AH, Baker JHE, Gillespie JA, Bashashati A, Minchinton AI, Zhou Y, Shah SP, Dedhar S.

Cancer Immunol Res. 2019 Jul;7(7):1064-1078. doi: 10.1158/2326-6066.CIR-18-0657. Epub 2019 May 14.

PMID:
31088846
10.

Regulation of pH by Carbonic Anhydrase 9 Mediates Survival of Pancreatic Cancer Cells With Activated KRAS in Response to Hypoxia.

McDonald PC, Chafe SC, Brown WS, Saberi S, Swayampakula M, Venkateswaran G, Nemirovsky O, Gillespie JA, Karasinska JM, Kalloger SE, Supuran CT, Schaeffer DF, Bashashati A, Shah SP, Topham JT, Yapp DT, Li J, Renouf DJ, Stanger BZ, Dedhar S.

Gastroenterology. 2019 Sep;157(3):823-837. doi: 10.1053/j.gastro.2019.05.004. Epub 2019 May 9.

11.

Comparison of Parenteral Opioid Dosing in Adult Sickle Cell Disease Patients With Vaso-occlusive Crisis.

Shah SP, Twilla JD, Kemp L, Phelps GL, Reaves A.

J Pain Palliat Care Pharmacother. 2018 Dec;32(4):201-207. doi: 10.1080/15360288.2019.1577938. Epub 2019 Mar 21.

PMID:
30896312
12.

clonealign: statistical integration of independent single-cell RNA and DNA sequencing data from human cancers.

Campbell KR, Steif A, Laks E, Zahn H, Lai D, McPherson A, Farahani H, Kabeer F, O'Flanagan C, Biele J, Brimhall J, Wang B, Walters P, Consortium I, Bouchard-Côté A, Aparicio S, Shah SP.

Genome Biol. 2019 Mar 12;20(1):54. doi: 10.1186/s13059-019-1645-z.

13.

Management of Chronic Hypertension Following Intracerebral Hemorrhage.

Van Matre ET, Cook AM, Shah SP, Rydz AC, Smetana KS.

Crit Care Nurs Q. 2019 Apr/Jun;42(2):148-164. doi: 10.1097/CNQ.0000000000000248. Review.

PMID:
30807339
14.

Influenza vaccination and myocarditis among patients receiving immune checkpoint inhibitors.

Awadalla M, Golden DLA, Mahmood SS, Alvi RM, Mercaldo ND, Hassan MZO, Banerji D, Rokicki A, Mulligan C, Murphy SPT, Jones-O'Connor M, Cohen JV, Heinzerling LM, Armanious M, Sullivan RJ, Damrongwatanasuk R, Chen CL, Gupta D, Kirchberger MC, Moslehi JJ, Shah SP, Ganatra S, Thavendiranathan P, Rizvi MA, Sahni G, Lyon AR, Tocchetti CG, Mercurio V, Thuny F, Ederhy S, Mahmoudi M, Lawrence DP, Groarke JD, Nohria A, Fradley MG, Reynolds KL, Neilan TG.

J Immunother Cancer. 2019 Feb 22;7(1):53. doi: 10.1186/s40425-019-0535-y.

15.

Integrated structural variation and point mutation signatures in cancer genomes using correlated topic models.

Funnell T, Zhang AW, Grewal D, McKinney S, Bashashati A, Wang YK, Shah SP.

PLoS Comput Biol. 2019 Feb 22;15(2):e1006799. doi: 10.1371/journal.pcbi.1006799. eCollection 2019 Feb.

16.

Somatic mutation detection and classification through probabilistic integration of clonal population information.

Dorri F, Jewell S, Bouchard-Côté A, Shah SP.

Commun Biol. 2019 Jan 31;2:44. doi: 10.1038/s42003-019-0291-z. eCollection 2019.

17.

Molecular and Genetic Characterization of MHC Deficiency Identifies EZH2 as Therapeutic Target for Enhancing Immune Recognition.

Ennishi D, Takata K, Béguelin W, Duns G, Mottok A, Farinha P, Bashashati A, Saberi S, Boyle M, Meissner B, Ben-Neriah S, Woolcock BW, Telenius A, Lai D, Teater M, Kridel R, Savage KJ, Sehn LH, Morin RD, Marra MA, Shah SP, Connors JM, Gascoyne RD, Scott DW, Melnick AM, Steidl C.

Cancer Discov. 2019 Apr;9(4):546-563. doi: 10.1158/2159-8290.CD-18-1090. Epub 2019 Jan 31.

PMID:
30705065
18.

Calculation of dose volume parameters and indices in plan evaluation of HDR interstitial brachytherapy by MUPIT in carcinoma cervix.

Poddar J, Sharma AD, Suryanarayan U, Shah SP, Parikh A, Mehta V, Kumar T.

Indian J Cancer. 2018 Jul-Sep;55(3):238-241. doi: 10.4103/ijc.IJC_643_17.

19.

ONE-YEAR OUTCOMES OF A NOVEL SURGICAL APPROACH FOR FIXATION OF A POSTERIOR CHAMBER INTRAOCULAR LENS USING GORE-TEX SUTURE.

Bonnell AC, Mantopoulos D, Fine HF, Shah SP, Wheatley HM, Prenner JL.

Retina. 2019 Jan 24. doi: 10.1097/IAE.0000000000002456. [Epub ahead of print]

PMID:
30689623
20.

A safety analysis of different drug regimens used in human immunodeficiency virus-positive patients.

Chauhan NS, Shah SP, Desai MK, Shah A.

Indian J Sex Transm Dis AIDS. 2018 Jul-Dec;39(2):84-90. doi: 10.4103/ijstd.IJSTD_116_17.

21.

Bronchoscopic lung cryobiopsy: An Indian association for bronchology position statement.

Dhooria S, Agarwal R, Sehgal IS, Aggarwal AN, Goyal R, Guleria R, Singhal P, Shah SP, Gupta KB, Koolwal S, Akkaraju J, Annapoorni S, Bal A, Bansal A, Behera D, Chhajed PN, Dhamija A, Dhar R, Garg M, Gopal B, Hibare KR, James P, Jindal A, Jindal SK, Khan A, Kishore N, Koul PA, Kumar A, Kumar R, Lall A, Madan K, Mandal A, Mehta RM, Mohan A, Nangia V, Nath A, Nayar S, Patel D, Pattabhiraman V, Raghupati N, Sarkar PK, Singh V, Sivaramakrishnan M, Srinivasan A, Swarnakar R, Talwar D, Thangakunam B.

Lung India. 2019 Jan-Feb;36(1):48-59. doi: 10.4103/lungindia.lungindia_75_18.

22.

The Impact of Prefilled Syringes on Endophthalmitis Following Intravitreal Injection of Ranibizumab.

Storey PP, Tauqeer Z, Yonekawa Y, Todorich B, Wolfe JD, Shah SP, Shah AR, Koto T, Abbey AM, Morizane Y, Sharma P, Wood EH, Morizane-Hosokawa M, Pendri P, Pancholy M, Harkey S, Jeng-Miller KW, Obeid A, Borkar DS, Chen E, Williams P, Okada AA, Inoue M, Shiraga F, Hirakata A, Shah CP, Prenner J, Garg S; Post-Injection Endophthalmitis (PIE) Study Group.

Am J Ophthalmol. 2019 Mar;199:200-208. doi: 10.1016/j.ajo.2018.11.023. Epub 2018 Dec 13.

PMID:
30552891
23.

Double-Hit Gene Expression Signature Defines a Distinct Subgroup of Germinal Center B-Cell-Like Diffuse Large B-Cell Lymphoma.

Ennishi D, Jiang A, Boyle M, Collinge B, Grande BM, Ben-Neriah S, Rushton C, Tang J, Thomas N, Slack GW, Farinha P, Takata K, Miyata-Takata T, Craig J, Mottok A, Meissner B, Saberi S, Bashashati A, Villa D, Savage KJ, Sehn LH, Kridel R, Mungall AJ, Marra MA, Shah SP, Steidl C, Connors JM, Gascoyne RD, Morin RD, Scott DW.

J Clin Oncol. 2019 Jan 20;37(3):190-201. doi: 10.1200/JCO.18.01583. Epub 2018 Dec 3.

PMID:
30523716
24.

Visually guided TEE probe insertion, making a case based on anatomic variation: A cadaveric study.

Jahangir A, Shah SP, Ahmad MM, Wade R, DuCanto J, Khandheria BK, Ammar KA.

Echocardiography. 2018 Oct;35(10):1616-1620. doi: 10.1111/echo.14129. Epub 2018 Sep 6.

PMID:
30189109
25.

Copy number signatures in ovarian cancer.

Shah SP.

Nat Genet. 2018 Sep;50(9):1208-1209. doi: 10.1038/s41588-018-0212-y. No abstract available.

PMID:
30158680
26.

Racial Disparities in Nephrology Consultation and Disease Progression among Veterans with CKD: An Observational Cohort Study.

Suarez J, Cohen JB, Potluri V, Yang W, Kaplan DE, Serper M, Shah SP, Reese PP.

J Am Soc Nephrol. 2018 Oct;29(10):2563-2573. doi: 10.1681/ASN.2018040344. Epub 2018 Aug 17.

PMID:
30120108
27.

Correction: TERT promoter mutation in adult granulosa cell tumor of the ovary.

Pilsworth JA, Cochrane DR, Xia Z, Aubert G, Färkkilä AEM, Horlings HM, Yanagida S, Yang W, Lim JLP, Wang YK, Bashashati A, Keul J, Wong A, Norris K, Brucker SY, Taran FA, Krämer B, Staebler A, van Meurs H, Oliva E, Shah SP, Kommoss S, Kommoss F, Gilks CB, Baird DM, Huntsman DG.

Mod Pathol. 2019 Apr;32(4):593. doi: 10.1038/s41379-018-0085-8.

PMID:
29968850
28.

First spot urine sodium after initial diuretic identifies patients at high risk for adverse outcome after heart failure hospitalization.

Luk A, Groarke JD, Desai AS, Mahmood SS, Gopal DM, Joyce E, Shah SP, Lindenfeld J, Stevenson L, Lakdawala NK.

Am Heart J. 2018 Sep;203:95-100. doi: 10.1016/j.ahj.2018.01.013. Epub 2018 May 19.

PMID:
29907406
29.

Interpretable dimensionality reduction of single cell transcriptome data with deep generative models.

Ding J, Condon A, Shah SP.

Nat Commun. 2018 May 21;9(1):2002. doi: 10.1038/s41467-018-04368-5.

30.

Interfaces of Malignant and Immunologic Clonal Dynamics in Ovarian Cancer.

Zhang AW, McPherson A, Milne K, Kroeger DR, Hamilton PT, Miranda A, Funnell T, Little N, de Souza CPE, Laan S, LeDoux S, Cochrane DR, Lim JLP, Yang W, Roth A, Smith MA, Ho J, Tse K, Zeng T, Shlafman I, Mayo MR, Moore R, Failmezger H, Heindl A, Wang YK, Bashashati A, Grewal DS, Brown SD, Lai D, Wan ANC, Nielsen CB, Huebner C, Tessier-Cloutier B, Anglesio MS, Bouchard-Côté A, Yuan Y, Wasserman WW, Gilks CB, Karnezis AN, Aparicio S, McAlpine JN, Huntsman DG, Holt RA, Nelson BH, Shah SP.

Cell. 2018 Jun 14;173(7):1755-1769.e22. doi: 10.1016/j.cell.2018.03.073. Epub 2018 May 10.

31.

Comparison of bedside screening methods for frailty assessment in older adult trauma patients in the emergency department.

Shah SP, Penn K, Kaplan SJ, Vrablik M, Jablonowski K, Pham TN, Reed MJ.

Am J Emerg Med. 2019 Jan;37(1):12-18. doi: 10.1016/j.ajem.2018.04.028. Epub 2018 Apr 14.

PMID:
29728285
32.

Lymphoma Maxilla mimicking orbital cellulitis; case report and review of Literature.

Shah SP, Chetri ST, Paudyal P, Lavaju P, Shah BP, Misra S.

Nepal J Ophthalmol. 2017 Jul;9(18):180-186. doi: 10.3126/nepjoph.v9i2.19266. Review.

PMID:
29634709
33.

Dosimetric analysis of the effects of the bladder volume on organs at risk (OAR) in high-dose-rate intracavitary brachytherapy in carcinoma cervix - an institutional study.

Sharma AD, Poddar J, Suryanarayan K U, Shah SP, Parikh A, Mehta V, Phys M, Kumar T, Phys M.

J Contemp Brachytherapy. 2018 Feb;10(1):26-31. doi: 10.5114/jcb.2018.74136. Epub 2018 Feb 28.

34.

Myocarditis in Patients Treated With Immune Checkpoint Inhibitors.

Mahmood SS, Fradley MG, Cohen JV, Nohria A, Reynolds KL, Heinzerling LM, Sullivan RJ, Damrongwatanasuk R, Chen CL, Gupta D, Kirchberger MC, Awadalla M, Hassan MZO, Moslehi JJ, Shah SP, Ganatra S, Thavendiranathan P, Lawrence DP, Groarke JD, Neilan TG.

J Am Coll Cardiol. 2018 Apr 24;71(16):1755-1764. doi: 10.1016/j.jacc.2018.02.037. Epub 2018 Mar 19.

35.

TERT promoter mutation in adult granulosa cell tumor of the ovary.

Pilsworth JA, Cochrane DR, Xia Z, Aubert G, Färkkilä AEM, Horlings HM, Yanagida S, Yang W, Lim JLP, Wang YK, Bashashati A, Keul J, Wong A, Norris K, Brucker SY, Taran FA, Krämer B, Staebler A, van Meurs H, Oliva E, Shah SP, Kommoss S, Kommoss F, Gilks CB, Baird DM, Huntsman DG.

Mod Pathol. 2018 Jul;31(7):1107-1115. doi: 10.1038/s41379-018-0007-9. Epub 2018 Feb 15. Erratum in: Mod Pathol. 2018 Jul 3;:.

36.

TG02 inhibits proteasome inhibitor-induced HSF1 serine 326 phosphorylation and heat shock response in multiple myeloma.

Shah SP, Nooka AK, Lonial S, Boise LH.

Blood Adv. 2017 Sep 26;1(21):1848-1853. doi: 10.1182/bloodadvances.2017006122. eCollection 2017 Sep 26.

37.

CLINICAL FINDINGS IN TRIAMCINOLONE-ASSOCIATED MACULOPATHY.

Fine HF, Reshef ER, Prenner JL, Shah SP, Grossniklaus HE, Roth DB.

Retina. 2019 Apr;39(4):761-765. doi: 10.1097/IAE.0000000000002007.

PMID:
29293206
38.

Polymorphic Ventricular Tachycardia Secondary to Subarachnoid Haemorrhage: A Rare Occurrence in the Setting of Normal QTc.

Shah SP, Pitroda P, Patel K, Chandak R, Ford T.

Cardiol Res. 2017 Oct;8(5):232-235. doi: 10.14740/cr574w. Epub 2017 Oct 27.

39.

LINE-1 retrotransposon-mediated DNA transductions in endometriosis associated ovarian cancers.

Xia Z, Cochrane DR, Anglesio MS, Wang YK, Nazeran T, Tessier-Cloutier B, McConechy MK, Senz J, Lum A, Bashashati A, Shah SP, Huntsman DG.

Gynecol Oncol. 2017 Dec;147(3):642-647. doi: 10.1016/j.ygyno.2017.09.032. Epub 2017 Oct 9.

PMID:
29032825
40.

Correction to: ReMixT: clone-specific genomic structure estimation in cancer.

McPherson AW, Roth A, Ha G, Chauve C, Steif A, de Souza CPE, Eirew P, Bouchard-Côté A, Aparicio S, Sahinalp SC, Shah SP.

Genome Biol. 2017 Oct 6;18(1):188. doi: 10.1186/s13059-017-1327-7. No abstract available.

41.

Prognostic Model to Predict Post-Autologous Stem-Cell Transplantation Outcomes in Classical Hodgkin Lymphoma.

Chan FC, Mottok A, Gerrie AS, Power M, Nijland M, Diepstra A, van den Berg A, Kamper P, d'Amore F, d'Amore AL, Hamilton-Dutoit S, Savage KJ, Shah SP, Connors JM, Gascoyne RD, Scott DW, Steidl C.

J Clin Oncol. 2017 Nov 10;35(32):3722-3733. doi: 10.1200/JCO.2017.72.7925. Epub 2017 Sep 12.

PMID:
28898161
42.

Clarithromycin-nifedipine-induced acute kidney injury.

Shah SP, Self TH, Bradsher RW 3rd, Owens RE.

Nurse Pract. 2017 Sep 21;42(9):49-51. doi: 10.1097/01.NPR.0000521991.15440.a7. No abstract available.

PMID:
28832423
43.

ReMixT: clone-specific genomic structure estimation in cancer.

McPherson AW, Roth A, Ha G, Chauve C, Steif A, de Souza CPE, Eirew P, Bouchard-Côté A, Aparicio S, Sahinalp SC, Shah SP.

Genome Biol. 2017 Jul 27;18(1):140. doi: 10.1186/s13059-017-1267-2. Erratum in: Genome Biol. 2017 Oct 6;18(1):188.

44.

Genetic and epigenetic inactivation of SESTRIN1 controls mTORC1 and response to EZH2 inhibition in follicular lymphoma.

Oricchio E, Katanayeva N, Donaldson MC, Sungalee S, Pasion JP, Béguelin W, Battistello E, Sanghvi VR, Jiang M, Jiang Y, Teater M, Parmigiani A, Budanov AV, Chan FC, Shah SP, Kridel R, Melnick AM, Ciriello G, Wendel HG.

Sci Transl Med. 2017 Jun 28;9(396). pii: eaak9969. doi: 10.1126/scitranslmed.aak9969.

45.

Kronos: a workflow assembler for genome analytics and informatics.

Taghiyar MJ, Rosner J, Grewal D, Grande BM, Aniba R, Grewal J, Boutros PC, Morin RD, Bashashati A, Shah SP.

Gigascience. 2017 Jul 1;6(7):1-10. doi: 10.1093/gigascience/gix042.

46.

Observing Clonal Dynamics across Spatiotemporal Axes: A Prelude to Quantitative Fitness Models for Cancer.

McPherson AW, Chan FC, Shah SP.

Cold Spring Harb Perspect Med. 2018 Feb 1;8(2). pii: a029603. doi: 10.1101/cshperspect.a029603. Review.

PMID:
28630229
47.

E-scape: interactive visualization of single-cell phylogenetics and cancer evolution.

Smith MA, Nielsen CB, Chan FC, McPherson A, Roth A, Farahani H, Machev D, Steif A, Shah SP.

Nat Methods. 2017 May 30;14(6):549-550. doi: 10.1038/nmeth.4303. No abstract available.

PMID:
28557980
48.

Bilateral Idiopathic Sclerochoroidal Calcifications.

Brahma VL, Shah SP, Chaudhry NA, Prenner JL.

Open Ophthalmol J. 2017 Apr 27;11:76-79. doi: 10.2174/1874364101711010076. eCollection 2017.

49.

Review of potential drug interaction between Oseltamivir and Warfarin and why it is important for emergency medicine physicians.

Shah SP, Patel KM, Subedi R, Gambhir HS.

Am J Emerg Med. 2017 Aug;35(8):1207.e3-1207.e4. doi: 10.1016/j.ajem.2017.03.040. Epub 2017 Mar 23. Review.

PMID:
28438444
50.

Genomic consequences of aberrant DNA repair mechanisms stratify ovarian cancer histotypes.

Wang YK, Bashashati A, Anglesio MS, Cochrane DR, Grewal DS, Ha G, McPherson A, Horlings HM, Senz J, Prentice LM, Karnezis AN, Lai D, Aniba MR, Zhang AW, Shumansky K, Siu C, Wan A, McConechy MK, Li-Chang H, Tone A, Provencher D, de Ladurantaye M, Fleury H, Okamoto A, Yanagida S, Yanaihara N, Saito M, Mungall AJ, Moore R, Marra MA, Gilks CB, Mes-Masson AM, McAlpine JN, Aparicio S, Huntsman DG, Shah SP.

Nat Genet. 2017 Jun;49(6):856-865. doi: 10.1038/ng.3849. Epub 2017 Apr 24.

PMID:
28436987

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