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Items: 1 to 50 of 92

1.

Clinical Interpretation of Detection of IgM Anti-Brucella Antibody in the Absence of IgG and Vice Versa; a Diagnostic Challenge for Clinicians.

Jindan RA, Saleem N, Shafi A, Amjad SM.

Pol J Microbiol. 2019;68(1):1-7. doi: 10.21307/pjm-2019-006.

PMID:
31050253
2.

A Multi-Cohort and Multi-Omics Meta-Analysis Framework to Identify Network-Based Gene Signatures.

Shafi A, Nguyen T, Peyvandipour A, Nguyen H, Draghici S.

Front Genet. 2019 Mar 19;10:159. doi: 10.3389/fgene.2019.00159. eCollection 2019.

3.

A Comprehensive Survey of Tools and Software for Active Subnetwork Identification.

Nguyen H, Shrestha S, Tran D, Shafi A, Draghici S, Nguyen T.

Front Genet. 2019 Mar 5;10:155. doi: 10.3389/fgene.2019.00155. eCollection 2019. Review.

4.

Ectopic expression of SOD and APX genes in Arabidopsis alters metabolic pools and genes related to secondary cell wall cellulose biosynthesis and improve salt tolerance.

Shafi A, Gill T, Zahoor I, Ahuja PS, Sreenivasulu Y, Kumar S, Singh AK.

Mol Biol Rep. 2019 Apr;46(2):1985-2002. doi: 10.1007/s11033-019-04648-3. Epub 2019 Jan 31.

PMID:
30706357
5.

Pharmacological Treatment of Parkinson’s Disease.

Zahoor I, Shafi A, Haq E.

In: Stoker TB, Greenland JC, editors. Parkinson’s Disease: Pathogenesis and Clinical Aspects [Internet]. Brisbane (AU): Codon Publications; 2018 Dec 21. Chapter 7.

6.

Interactions of Tomato and Botrytis cinerea Genetic Diversity: Parsing the Contributions of Host Differentiation, Domestication, and Pathogen Variation.

Soltis NE, Atwell S, Shi G, Fordyce R, Gwinner R, Gao D, Shafi A, Kliebenstein DJ.

Plant Cell. 2019 Feb;31(2):502-519. doi: 10.1105/tpc.18.00857. Epub 2019 Jan 15.

PMID:
30647076
7.

Parameter estimation of qualitative biological regulatory networks on high performance computing hardware.

Saeed MT, Ahmad J, Baumbach J, Pauling J, Shafi A, Paracha RZ, Hayat A, Ali A.

BMC Syst Biol. 2018 Dec 29;12(1):146. doi: 10.1186/s12918-018-0670-y.

8.

Noninvasive Assessment of Retinal Blood Flow Using a Novel Handheld Laser Speckle Contrast Imager.

Rege A, Cunningham SI, Liu Y, Raje K, Kalarn S, Brooke MJ, Schocket L, Scott S, Shafi A, Toledo L, Saeedi OJ.

Transl Vis Sci Technol. 2018 Nov 14;7(6):7. doi: 10.1167/tvst.7.6.7. eCollection 2018 Nov.

9.

Patient-derived Models Reveal Impact of the Tumor Microenvironment on Therapeutic Response.

Shafi AA, Schiewer MJ, de Leeuw R, Dylgjeri E, McCue PA, Shah N, Gomella LG, Lallas CD, Trabulsi EJ, Centenera MM, Hickey TE, Butler LM, Raj G, Tilley WD, Cukierman E, Knudsen KE.

Eur Urol Oncol. 2018 Sep;1(4):325-337. doi: 10.1016/j.euo.2018.04.019. Epub 2018 Jun 6.

PMID:
30467556
10.

PARP-1 regulates DNA repair factor availability.

Schiewer MJ, Mandigo AC, Gordon N, Huang F, Gaur S, de Leeuw R, Zhao SG, Evans J, Han S, Parsons T, Birbe R, McCue P, McNair C, Chand SN, Cendon-Florez Y, Gallagher P, McCann JJ, Poudel Neupane N, Shafi AA, Dylgjeri E, Brand LJ, Visakorpi T, Raj GV, Lallas CD, Trabulsi EJ, Gomella LG, Dicker AP, Kelly WK, Leiby BE, Knudsen B, Feng FY, Knudsen KE.

EMBO Mol Med. 2018 Dec;10(12). pii: e8816. doi: 10.15252/emmm.201708816.

11.

Skin Prick Test Reactivity to Common Aeroallergens among Allergic Rhinitis Patients.

Saleem N, Waqar S, Shafi A.

J Coll Physicians Surg Pak. 2018 Oct;28(10):766-771. doi: 3018.

PMID:
30266121
12.

Tricuspid annular plane of systolic excursion to prognosticate acute pulmonary symptomatic embolism (TAPSEPAPSE study).

Lahham S, Fox JC, Thompson M, Nakornchai T, Alruwaili B, Doman G, May Lee S, Shafi A, Shniter I, Valdes V, Zhang L.

J Ultrasound Med. 2019 Mar;38(3):695-702. doi: 10.1002/jum.14753. Epub 2018 Sep 4.

PMID:
30182486
13.

A novel computational approach for drug repurposing using systems biology.

Peyvandipour A, Saberian N, Shafi A, Donato M, Draghici S.

Bioinformatics. 2018 Aug 15;34(16):2817-2825. doi: 10.1093/bioinformatics/bty133.

PMID:
29534151
14.

Necessity of Interrupted Time Series Analysis in Evaluating the Impact of PHS Risk Identification and Introduction of Direct-Acting Antiviral Therapy and Share 35 Implementation.

Azab M, Shah S, Liu X, Shafi A, Al Dawoodi T, Elmofti Y, Froehlich M, Ukken J, Yoo JW.

Transplantation. 2018 Mar;102(3):e122-e123. doi: 10.1097/TP.0000000000002040. No abstract available.

PMID:
29319614
15.

Extended DAA indications for hepatitis C patients awaiting liver transplantation and further statistical considerations.

Azab M, Shah S, Liu X, Ukken J, Froehlich M, Shafi A, Al Dawoodi T, Liu C, Shin HP, Yoo JW.

J Hepatol. 2018 Mar;68(3):626-627. doi: 10.1016/j.jhep.2017.09.029. Epub 2017 Oct 24. No abstract available.

PMID:
29079290
16.

Left Ventricular Systolic Dysfunction Predicted By Early Troponin I Release After Anthracycline Based Chemotherapy In Breast Cancer Patients.

Shafi A, Siddiqui N, Imtiaz S, Din Sajid MU.

J Ayub Med Coll Abbottabad. 2017 Apr-Jun;29(2):266-269.

17.

The risk of violence associated with novel psychoactive substance misuse in patients presenting to acute mental health services.

Shafi A, Gallagher P, Stewart N, Martinotti G, Corazza O.

Hum Psychopharmacol. 2017 May;32(3). doi: 10.1002/hup.2606. Epub 2017 Jun 19.

PMID:
28631373
18.
19.

A survey of the approaches for identifying differential methylation using bisulfite sequencing data.

Shafi A, Mitrea C, Nguyen T, Draghici S.

Brief Bioinform. 2018 Sep 28;19(5):737-753. doi: 10.1093/bib/bbx013. Review.

20.

Effects of hospital palliative care on health, length of stay, and in-hospital mortality across intensive and non-intensive-care units: A systematic review and metaanalysis.

Liu X, Dawod Y, Wonnaparhown A, Shafi A, Doo L, Yoo JW, Ko E, Choi YS.

Palliat Support Care. 2017 Dec;15(6):741-752. doi: 10.1017/S1478951516001164. Epub 2017 Feb 15. Review.

PMID:
28196551
21.

Clinical implications and quality of evidence in metaanalysis about effects of palliative care in critically ill patients in the intensive care unit.

Wonnaparhown A, Shafi A, Liu X, Villamagna AH, Lee M, Nakagawa S, Yoo JW.

Palliat Support Care. 2017 Oct;15(5):513-515. doi: 10.1017/S1478951516001036. Epub 2017 Feb 6. No abstract available.

PMID:
28162124
22.

Formal modeling and analysis of the hexosamine biosynthetic pathway: role of O-linked N-acetylglucosamine transferase in oncogenesis and cancer progression.

Saeed MT, Ahmad J, Kanwal S, Holowatyj AN, Sheikh IA, Zafar Paracha R, Shafi A, Siddiqa A, Bibi Z, Khan M, Ali A.

PeerJ. 2016 Sep 27;4:e2348. eCollection 2016.

23.

International guideline changes and the incidence of infective endocarditis: a systematic review.

Khan O, Shafi AM, Timmis A.

Open Heart. 2016 Aug 25;3(2):e000498. doi: 10.1136/openhrt-2016-000498. eCollection 2016.

24.

An extended assistantship for final-year students.

Al-Dulaimy B, J'Bari A, Yassin A, Shafi A.

Clin Teach. 2016 Aug;13(4):312. doi: 10.1111/tct.12491. No abstract available.

PMID:
27424541
25.

Clinical predictors of anticipatory emesis in patients treated with chemotherapy at a tertiary care cancer hospital.

Qureshi F, Shafi A, Ali S, Siddiqui N.

Pak J Med Sci. 2016 Mar-Apr;32(2):337-40. doi: 10.12669/pjms.322.9493.

26.

Current Status of Simulation and Training Models in Urological Surgery: A Systematic Review.

Aydin A, Shafi AM, Shamim Khan M, Dasgupta P, Ahmed K.

J Urol. 2016 Aug;196(2):312-20. doi: 10.1016/j.juro.2016.01.131. Epub 2016 Mar 23. Review.

PMID:
27016463
27.

Cleft Lip and Palate and Alveolar Bone Grafting in the United Kingdom: A Brief Overview for Non-specialists.

Shafi A, Ah-Kee EY, Khan AA.

West Indian Med J. 2015 Jun 29;65(1):185-188. doi: 10.7727/wimj.2015.191.

PMID:
26901609
28.

A review of drug-induced acute angle closure glaucoma for non-ophthalmologists.

Ah-Kee EY, Egong E, Shafi A, Lim LT, Yim JL.

Qatar Med J. 2015 May 10;2015(1):6. doi: 10.5339/qmj.2015.6. eCollection 2015. Review.

29.

Difficulty accessing data from randomised trials of drugs for heart failure: a call for action.

Fleetcroft R, Ford J, Gollop ND, MacKeith P, Perera K, Shafi AA, Sorefan J, Thurlow C, Wakelin R, Cowie MR, Steel N.

BMJ. 2015 Oct 21;351:h5002. doi: 10.1136/bmj.h5002. Review. No abstract available.

30.

Are junior doctors in today's NHS competent in managing ophthalmic cases in the emergency department?

Ah-Kee EY, Scott RA, Shafi A, McCabe G, Lim LT.

Eye (Lond). 2016 Jan;30(1):164. doi: 10.1038/eye.2015.193. Epub 2015 Oct 9. No abstract available.

31.

Differential regulation of metabolic pathways by androgen receptor (AR) and its constitutively active splice variant, AR-V7, in prostate cancer cells.

Shafi AA, Putluri V, Arnold JM, Tsouko E, Maity S, Roberts JM, Coarfa C, Frigo DE, Putluri N, Sreekumar A, Weigel NL.

Oncotarget. 2015 Oct 13;6(31):31997-2012. doi: 10.18632/oncotarget.5585.

32.

How can junior doctors become more effective teachers?

Ah-Kee EY, Scott RA, Shafi A, Khan AA.

Adv Med Educ Pract. 2015 Jul 8;6:487-8. doi: 10.2147/AMEP.S88352. eCollection 2015. No abstract available.

33.

The role of simulation in urological training - A quantitative study of practice and opinions.

Aydin A, Ahmed K, Shafi AM, Khan MS, Dasgupta P.

Surgeon. 2016 Dec;14(6):301-307. doi: 10.1016/j.surge.2015.06.003. Epub 2015 Jul 4.

PMID:
26148761
34.

Management of diabetic complications through fruit flavonoids as a natural remedy.

Tanveer A, Akram K, Farooq U, Hayat Z, Shafi A.

Crit Rev Food Sci Nutr. 2017 May 3;57(7):1411-1422. doi: 10.1080/10408398.2014.1000482. Review.

PMID:
26065867
35.

Expression of SOD and APX genes positively regulates secondary cell wall biosynthesis and promotes plant growth and yield in Arabidopsis under salt stress.

Shafi A, Chauhan R, Gill T, Swarnkar MK, Sreenivasulu Y, Kumar S, Kumar N, Shankar R, Ahuja PS, Singh AK.

Plant Mol Biol. 2015 Apr;87(6):615-31. doi: 10.1007/s11103-015-0301-6. Epub 2015 Mar 10.

PMID:
25754733
36.

Neoadjuvant chemotherapy in locally advanced breast cancer.

Iqbal J, Shafi AA, Alharthi BN.

J Coll Physicians Surg Pak. 2014 Nov;24(11):845-8. doi: 11.2014/JCPSP.845848.

PMID:
25404445
37.

Simultaneous over-expression of PaSOD and RaAPX in transgenic Arabidopsis thaliana confers cold stress tolerance through increase in vascular lignifications.

Shafi A, Dogra V, Gill T, Ahuja PS, Sreenivasulu Y.

PLoS One. 2014 Oct 17;9(10):e110302. doi: 10.1371/journal.pone.0110302. eCollection 2014.

38.

Unicentric Castleman's disease located in the scapular region.

Rasheed A, Khan AH, Rasool M, Shafi A.

J Cancer Res Ther. 2014 Jul-Sep;10(3):737-8. doi: 10.4103/0973-1482.136037.

39.

Development of the community midwifery education initiative and its influence on women's health and empowerment in Afghanistan: a case study.

Speakman EM, Shafi A, Sondorp E, Atta N, Howard N.

BMC Womens Health. 2014 Sep 15;14:111. doi: 10.1186/1472-6874-14-111.

40.

Perspectives on reproductive healthcare delivered through a basic package of health services in Afghanistan: a qualitative study.

Howard N, Woodward A, Patel D, Shafi A, Oddy L, ter Veen A, Atta N, Sondorp E, Roberts B.

BMC Health Serv Res. 2014 Aug 28;14:359. doi: 10.1186/1472-6963-14-359.

41.
42.

Androgen receptor and its splice variant, AR-V7, differentially regulate FOXA1 sensitive genes in LNCaP prostate cancer cells.

Krause WC, Shafi AA, Nakka M, Weigel NL.

Int J Biochem Cell Biol. 2014 Sep;54:49-59. doi: 10.1016/j.biocel.2014.06.013. Epub 2014 Jul 4.

43.

Risk factors for failure of supraglottoplasty.

Douglas CM, Shafi A, Higgins G, Blackmore K, Wynne DM, Kubba H, Clement WA.

Int J Pediatr Otorhinolaryngol. 2014 Sep;78(9):1485-8. doi: 10.1016/j.ijporl.2014.06.014. Epub 2014 Jun 20.

PMID:
25005226
44.

Improved callus induction, shoot regeneration, and salt stress tolerance in Arabidopsis overexpressing superoxide dismutase from Potentilla atrosanguinea.

Shafi A, Gill T, Sreenivasulu Y, Kumar S, Ahuja PS, Singh AK.

Protoplasma. 2015 Jan;252(1):41-51. doi: 10.1007/s00709-014-0653-9. Epub 2014 May 17.

PMID:
24839001
45.

Cyto-histopathological and Clinical Correlation of Pilomatricomas: A 4 Year Study.

Shafi A, Khan AH, Bashir S, Ul Rasool M, Sharma S, Rasheed A.

Int J Trichology. 2013 Oct;5(4):190-3. doi: 10.4103/0974-7753.130394.

46.

New routine for nuclear medicine technologists to determine when to add SPECT/CT to a whole-body bone scan.

Shafi A, Thorsson O, Edenbrandt L.

J Nucl Med Technol. 2014 Mar;42(1):28-32. doi: 10.2967/jnmt.113.132035. Epub 2014 Jan 27.

47.

Use of the Internet by patients attending hospital for oral and maxillofacial procedures.

Shafi A, Dewar A, Cowan C, Sood V, Brennan PA, Hislop S.

Br J Oral Maxillofac Surg. 2014 Jan;52(1):48-53. doi: 10.1016/j.bjoms.2013.06.006. Epub 2013 Jul 25.

PMID:
23891264
48.

Androgen receptors in hormone-dependent and castration-resistant prostate cancer.

Shafi AA, Yen AE, Weigel NL.

Pharmacol Ther. 2013 Dec;140(3):223-38. doi: 10.1016/j.pharmthera.2013.07.003. Epub 2013 Jul 13. Review.

PMID:
23859952
49.

Piperacillin-tazobactam as a cost effective monotherapy in febrile neutropenia.

Fasih S, Siddiqui N, Muza N, Hannan A, Sarwar S, Shafi A, Athar S.

J Ayub Med Coll Abbottabad. 2013 Jul-Dec;25(3-4):19-22.

PMID:
25226731
50.

Caruncular neurofibroma not associated with neurofibromatosis.

Twaij S, Shafi A, Marshall T, Jabir M.

BMJ Case Rep. 2013 Feb 21;2013. pii: bcr2012007764. doi: 10.1136/bcr-2012-007764.

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