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Items: 1 to 50 of 88

1.

High flux through the oxidative pentose phosphate pathway lowers efficiency in developing Camelina seeds.

Carey LM, Clark TJ, Deshpande RR, Cocuron JC, Rustad EK, Shachar-Hill Y.

Plant Physiol. 2019 Nov 7. pii: pp.00740.2019. doi: 10.1104/pp.19.00740. [Epub ahead of print]

PMID:
31699846
2.

Unfair trade underground revealed by integrating data with Nash bargaining models.

Clark TJ, Friel CA, Grman E, Friesen ML, Shachar-Hill Y.

New Phytol. 2019 May;222(3):1325-1337. doi: 10.1111/nph.15703. Epub 2019 Feb 25.

PMID:
30671951
3.

Modelling nutritional mutualisms: challenges and opportunities for data integration.

Clark TJ, Friel CA, Grman E, Shachar-Hill Y, Friesen ML.

Ecol Lett. 2017 Sep;20(9):1203-1215. doi: 10.1111/ele.12810. Epub 2017 Jul 25. Review.

PMID:
28743172
4.

Correction: Genome, Functional Gene Annotation, and Nuclear Transformation of the Heterokont Oleaginous Alga Nannochloropsis oceanica CCMP1779.

Vieler A, Wu G, Tsai CH, Bullard B, Cornish AJ, Harvey C, Reca IB, Thornburg C, Achawanantakun R, Buehl CJ, Campbell MS, Cavalier D, Childs KL, Clark TJ, Deshpande R, Erickson E, Armenia Ferguson A, Handee W, Kong Q, Li X, Liu B, Lundback S, Peng C, Roston RL, Sanjaya, Simpson JP, TerBush A, Warakanont J, Zäuner S, Farre EM, Hegg EL, Jiang N, Kuo MH, Lu Y, Niyogi KK, Ohlrogge J, Osteryoung KW, Shachar-Hill Y, Sears BB, Sun Y, Takahashi H, Yandell M, Shiu SH, Benning C.

PLoS Genet. 2017 May 23;13(5):e1006802. doi: 10.1371/journal.pgen.1006802. eCollection 2017 May.

5.

Metabolic flux analyses of Pseudomonas aeruginosa cystic fibrosis isolates.

Opperman MJ, Shachar-Hill Y.

Metab Eng. 2016 Nov;38:251-263. doi: 10.1016/j.ymben.2016.09.002. Epub 2016 Sep 13.

PMID:
27637318
6.

The Relationship of Triacylglycerol and Starch Accumulation to Carbon and Energy Flows during Nutrient Deprivation in Chlamydomonas reinhardtii.

Juergens MT, Disbrow B, Shachar-Hill Y.

Plant Physiol. 2016 Aug;171(4):2445-57. doi: 10.1104/pp.16.00761. Epub 2016 Jun 20.

7.

Lipid labeling from acetate or glycerol in cultured embryos of Camelina sativa seeds: A tale of two substrates.

Pollard M, Delamarter D, Martin TM, Shachar-Hill Y.

Phytochemistry. 2015 Oct;118:192-203. doi: 10.1016/j.phytochem.2015.07.021. Epub 2015 Aug 8.

PMID:
26265565
8.

Lipid analysis of developing Camelina sativa seeds and cultured embryos.

Pollard M, Martin TM, Shachar-Hill Y.

Phytochemistry. 2015 Oct;118:23-32. doi: 10.1016/j.phytochem.2015.07.022. Epub 2015 Aug 8.

PMID:
26262674
9.

Identification of regulatory network hubs that control lipid metabolism in Chlamydomonas reinhardtii.

Gargouri M, Park JJ, Holguin FO, Kim MJ, Wang H, Deshpande RR, Shachar-Hill Y, Hicks LM, Gang DR.

J Exp Bot. 2015 Aug;66(15):4551-66. doi: 10.1093/jxb/erv217. Epub 2015 May 28.

10.

Are Aquaporins the Missing Transmembrane Osmosensors?

Hill AE, Shachar-Hill Y.

J Membr Biol. 2015 Aug;248(4):753-65. doi: 10.1007/s00232-015-9790-0. Epub 2015 Mar 20. Review.

PMID:
25791748
11.

The response of Chlamydomonas reinhardtii to nitrogen deprivation: a systems biology analysis.

Park JJ, Wang H, Gargouri M, Deshpande RR, Skepper JN, Holguin FO, Juergens MT, Shachar-Hill Y, Hicks LM, Gang DR.

Plant J. 2015 Feb;81(4):611-24. doi: 10.1111/tpj.12747.

12.

The regulation of photosynthetic structure and function during nitrogen deprivation in Chlamydomonas reinhardtii.

Juergens MT, Deshpande RR, Lucker BF, Park JJ, Wang H, Gargouri M, Holguin FO, Disbrow B, Schaub T, Skepper JN, Kramer DM, Gang DR, Hicks LM, Shachar-Hill Y.

Plant Physiol. 2015 Feb;167(2):558-73. doi: 10.1104/pp.114.250530. Epub 2014 Dec 8.

13.

Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis.

Tisserant E, Malbreil M, Kuo A, Kohler A, Symeonidi A, Balestrini R, Charron P, Duensing N, Frei dit Frey N, Gianinazzi-Pearson V, Gilbert LB, Handa Y, Herr JR, Hijri M, Koul R, Kawaguchi M, Krajinski F, Lammers PJ, Masclaux FG, Murat C, Morin E, Ndikumana S, Pagni M, Petitpierre D, Requena N, Rosikiewicz P, Riley R, Saito K, San Clemente H, Shapiro H, van Tuinen D, Bécard G, Bonfante P, Paszkowski U, Shachar-Hill YY, Tuskan GA, Young JP, Sanders IR, Henrissat B, Rensing SA, Grigoriev IV, Corradi N, Roux C, Martin F.

Proc Natl Acad Sci U S A. 2013 Dec 10;110(50):20117-22. doi: 10.1073/pnas.1313452110. Epub 2013 Nov 25. Erratum in: Proc Natl Acad Sci U S A. 2014 Jan 7;111(1):563. Young, Peter W [corrected to Young, J Peter W].

14.

High-throughput data pipelines for metabolic flux analysis in plants.

Poskar CH, Huege J, Krach C, Shachar-Hill Y, Junker BH.

Methods Mol Biol. 2014;1090:223-46. doi: 10.1007/978-1-62703-688-7_14.

PMID:
24222419
15.

Mercury-sensitive water channels as possible sensors of water potentials in pollen.

Shachar-Hill B, Hill AE, Powell J, Skepper JN, Shachar-Hill Y.

J Exp Bot. 2013 Nov;64(16):5195-205. doi: 10.1093/jxb/ert311. Epub 2013 Oct 5.

16.

Response to "What do aquaporin knockout studies tell us about fluid transport in epithelia?" Maclaren OJ, Sneyd J, Crampin EJ (2013) J Membr Biol 246:297-305.

Hill AE, Shachar-Hill Y.

J Membr Biol. 2013 Sep;246(9):665-7. doi: 10.1007/s00232-013-9585-0. Epub 2013 Aug 22. No abstract available.

PMID:
23975338
17.

Dynamic metabolic flux analysis of plant cell wall synthesis.

Chen X, Alonso AP, Shachar-Hill Y.

Metab Eng. 2013 Jul;18:78-85. doi: 10.1016/j.ymben.2013.04.006. Epub 2013 Apr 30.

PMID:
23644173
18.

Metabolic network flux analysis for engineering plant systems.

Shachar-Hill Y.

Curr Opin Biotechnol. 2013 Apr;24(2):247-55. doi: 10.1016/j.copbio.2013.01.004. Epub 2013 Feb 8. Review.

PMID:
23395406
19.

Genome, functional gene annotation, and nuclear transformation of the heterokont oleaginous alga Nannochloropsis oceanica CCMP1779.

Vieler A, Wu G, Tsai CH, Bullard B, Cornish AJ, Harvey C, Reca IB, Thornburg C, Achawanantakun R, Buehl CJ, Campbell MS, Cavalier D, Childs KL, Clark TJ, Deshpande R, Erickson E, Armenia Ferguson A, Handee W, Kong Q, Li X, Liu B, Lundback S, Peng C, Roston RL, Sanjaya, Simpson JP, Terbush A, Warakanont J, Zäuner S, Farre EM, Hegg EL, Jiang N, Kuo MH, Lu Y, Niyogi KK, Ohlrogge J, Osteryoung KW, Shachar-Hill Y, Sears BB, Sun Y, Takahashi H, Yandell M, Shiu SH, Benning C.

PLoS Genet. 2012;8(11):e1003064. doi: 10.1371/journal.pgen.1003064. Epub 2012 Nov 15. Erratum in: PLoS Genet. 2017 May 23;13(5):e1006802.

20.

iMS2Flux--a high-throughput processing tool for stable isotope labeled mass spectrometric data used for metabolic flux analysis.

Poskar CH, Huege J, Krach C, Franke M, Shachar-Hill Y, Junker BH.

BMC Bioinformatics. 2012 Nov 12;13:295. doi: 10.1186/1471-2105-13-295.

21.

An osmotic model of the growing pollen tube.

Hill AE, Shachar-Hill B, Skepper JN, Powell J, Shachar-Hill Y.

PLoS One. 2012;7(5):e36585. doi: 10.1371/journal.pone.0036585. Epub 2012 May 16.

22.

Insights into metabolic efficiency from flux analysis.

Chen X, Shachar-Hill Y.

J Exp Bot. 2012 Mar;63(6):2343-51. doi: 10.1093/jxb/ers057. Epub 2012 Feb 29. Review.

PMID:
22378949
23.

Metabolic cartography: experimental quantification of metabolic fluxes from isotopic labelling studies.

O'Grady J, Schwender J, Shachar-Hill Y, Morgan JA.

J Exp Bot. 2012 Mar;63(6):2293-308. doi: 10.1093/jxb/ers032. Epub 2012 Feb 27. Review.

PMID:
22371075
24.

Isotope labelling of Rubisco subunits provides in vivo information on subcellular biosynthesis and exchange of amino acids between compartments.

Allen DK, Laclair RW, Ohlrogge JB, Shachar-Hill Y.

Plant Cell Environ. 2012 Jul;35(7):1232-44. doi: 10.1111/j.1365-3040.2012.02485.x. Epub 2012 Feb 24.

25.

The transcriptome of the arbuscular mycorrhizal fungus Glomus intraradices (DAOM 197198) reveals functional tradeoffs in an obligate symbiont.

Tisserant E, Kohler A, Dozolme-Seddas P, Balestrini R, Benabdellah K, Colard A, Croll D, Da Silva C, Gomez SK, Koul R, Ferrol N, Fiorilli V, Formey D, Franken P, Helber N, Hijri M, Lanfranco L, Lindquist E, Liu Y, Malbreil M, Morin E, Poulain J, Shapiro H, van Tuinen D, Waschke A, Azcón-Aguilar C, Bécard G, Bonfante P, Harrison MJ, Küster H, Lammers P, Paszkowski U, Requena N, Rensing SA, Roux C, Sanders IR, Shachar-Hill Y, Tuskan G, Young JP, Gianinazzi-Pearson V, Martin F.

New Phytol. 2012 Feb;193(3):755-69. doi: 10.1111/j.1469-8137.2011.03948.x. Epub 2011 Nov 16.

26.

Synergy between (13)C-metabolic flux analysis and flux balance analysis for understanding metabolic adaptation to anaerobiosis in E. coli.

Chen X, Alonso AP, Allen DK, Reed JL, Shachar-Hill Y.

Metab Eng. 2011 Jan;13(1):38-48. doi: 10.1016/j.ymben.2010.11.004. Epub 2010 Dec 1.

PMID:
21129495
27.

Central metabolic fluxes in the endosperm of developing maize seeds and their implications for metabolic engineering.

Alonso AP, Val DL, Shachar-Hill Y.

Metab Eng. 2011 Jan;13(1):96-107. doi: 10.1016/j.ymben.2010.10.002. Epub 2010 Oct 20.

PMID:
20969971
28.

Changes in transcript abundance in Chlamydomonas reinhardtii following nitrogen deprivation predict diversion of metabolism.

Miller R, Wu G, Deshpande RR, Vieler A, Gärtner K, Li X, Moellering ER, Zäuner S, Cornish AJ, Liu B, Bullard B, Sears BB, Kuo MH, Hegg EL, Shachar-Hill Y, Shiu SH, Benning C.

Plant Physiol. 2010 Dec;154(4):1737-52. doi: 10.1104/pp.110.165159. Epub 2010 Oct 8.

29.

Regulation of the nitrogen transfer pathway in the arbuscular mycorrhizal symbiosis: gene characterization and the coordination of expression with nitrogen flux.

Tian C, Kasiborski B, Koul R, Lammers PJ, Bücking H, Shachar-Hill Y.

Plant Physiol. 2010 Jul;153(3):1175-87. doi: 10.1104/pp.110.156430. Epub 2010 May 6.

30.

Quantifying the labeling and the levels of plant cell wall precursors using ion chromatography tandem mass spectrometry.

Alonso AP, Piasecki RJ, Wang Y, LaClair RW, Shachar-Hill Y.

Plant Physiol. 2010 Jul;153(3):915-24. doi: 10.1104/pp.110.155713. Epub 2010 May 4.

31.

Understanding fatty acid synthesis in developing maize embryos using metabolic flux analysis.

Alonso AP, Dale VL, Shachar-Hill Y.

Metab Eng. 2010 Sep;12(5):488-97. doi: 10.1016/j.ymben.2010.04.002. Epub 2010 Apr 18.

PMID:
20406696
32.

Triacylglyceride metabolism by Fusarium graminearum during colonization and sexual development on wheat.

Guenther JC, Hallen-Adams HE, Bücking H, Shachar-Hill Y, Trail F.

Mol Plant Microbe Interact. 2009 Dec;22(12):1492-503. doi: 10.1094/MPMI-22-12-1492.

33.

Germinating spores of Glomus intraradices can use internal and exogenous nitrogen sources for de novo biosynthesis of amino acids.

Gachomo E, Allen JW, Pfeffer PE, Govindarajulu M, Douds DD, Jin H, Nagahashi G, Lammers PJ, Shachar-Hill Y, Bücking H.

New Phytol. 2009 Oct;184(2):399-411. doi: 10.1111/j.1469-8137.2009.02968.x. Epub 2009 Jul 29.

34.

Energy. Driving on biomass.

Ohlrogge J, Allen D, Berguson B, Dellapenna D, Shachar-Hill Y, Stymne S.

Science. 2009 May 22;324(5930):1019-20. doi: 10.1126/science.1171740. No abstract available.

PMID:
19460990
35.

Metabolic flux analysis in plants: coping with complexity.

Allen DK, Libourel IG, Shachar-Hill Y.

Plant Cell Environ. 2009 Sep;32(9):1241-57. doi: 10.1111/j.1365-3040.2009.01992.x. Epub 2009 Apr 22. Review.

36.

The long hard road to a completed Glomus intraradices genome.

Martin F, Gianinazzi-Pearson V, Hijri M, Lammers P, Requena N, Sanders IR, Shachar-Hill Y, Shapiro H, Tuskan GA, Young JP.

New Phytol. 2008;180(4):747-50. doi: 10.1111/j.1469-8137.2008.02671.x. No abstract available.

37.

The role of light in soybean seed filling metabolism.

Allen DK, Ohlrogge JB, Shachar-Hill Y.

Plant J. 2009 Apr;58(2):220-34. doi: 10.1111/j.1365-313X.2008.03771.x. Epub 2008 Dec 10.

38.

Sulfur transfer through an arbuscular mycorrhiza.

Allen JW, Shachar-Hill Y.

Plant Physiol. 2009 Jan;149(1):549-60. doi: 10.1104/pp.108.129866. Epub 2008 Oct 31.

39.

Root exudates stimulate the uptake and metabolism of organic carbon in germinating spores of Glomus intraradices.

Bücking H, Abubaker J, Govindarajulu M, Tala M, Pfeffer PE, Nagahashi G, Lammers P, Shachar-Hill Y.

New Phytol. 2008;180(3):684-95. doi: 10.1111/j.1469-8137.2008.02590.x. Epub 2008 Aug 5.

40.

Arabidopsis 10-formyl tetrahydrofolate deformylases are essential for photorespiration.

Collakova E, Goyer A, Naponelli V, Krassovskaya I, Gregory JF 3rd, Hanson AD, Shachar-Hill Y.

Plant Cell. 2008 Jul;20(7):1818-32. doi: 10.1105/tpc.108.058701. Epub 2008 Jul 15.

41.

Metabolic flux analysis in plants: from intelligent design to rational engineering.

Libourel IG, Shachar-Hill Y.

Annu Rev Plant Biol. 2008;59:625-50. doi: 10.1146/annurev.arplant.58.032806.103822. Review.

PMID:
18257707
42.

A metabolic flux analysis to study the role of sucrose synthase in the regulation of the carbon partitioning in central metabolism in maize root tips.

Alonso AP, Raymond P, Hernould M, Rondeau-Mouro C, de Graaf A, Chourey P, Lahaye M, Shachar-Hill Y, Rolin D, Dieuaide-Noubhani M.

Metab Eng. 2007 Sep-Nov;9(5-6):419-32. Epub 2007 Jul 10.

PMID:
17869563
43.

Carbon conversion efficiency and central metabolic fluxes in developing sunflower (Helianthus annuus L.) embryos.

Alonso AP, Goffman FD, Ohlrogge JB, Shachar-Hill Y.

Plant J. 2007 Oct;52(2):296-308. Epub 2007 Aug 7.

44.

Design of substrate label for steady state flux measurements in plant systems using the metabolic network of Brassica napus embryos.

Libourel IG, Gehan JP, Shachar-Hill Y.

Phytochemistry. 2007 Aug-Sep;68(16-18):2211-21. Epub 2007 Jun 12.

PMID:
17568637
45.

Compartment-specific labeling information in 13C metabolic flux analysis of plants.

Allen DK, Shachar-Hill Y, Ohlrogge JB.

Phytochemistry. 2007 Aug-Sep;68(16-18):2197-210. Epub 2007 May 25.

PMID:
17532016
46.

Quantifying flows through metabolic networks and the prospects for fluxomic studies of mycorrhizas.

Shachar-Hill Y.

New Phytol. 2007;174(2):235-40. No abstract available.

47.

Towards the plant metabolome and beyond.

Last RL, Jones AD, Shachar-Hill Y.

Nat Rev Mol Cell Biol. 2007 Feb;8(2):167-74. doi: 10.1038/nrm2098. Epub 2007 Jan 10. Review.

PMID:
17213843
48.

Determining Actinobacillus succinogenes metabolic pathways and fluxes by NMR and GC-MS analyses of 13C-labeled metabolic product isotopomers.

McKinlay JB, Shachar-Hill Y, Zeikus JG, Vieille C.

Metab Eng. 2007 Mar;9(2):177-92. Epub 2006 Nov 17.

PMID:
17197218
49.

Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.

Goyer A, Collakova E, Shachar-Hill Y, Hanson AD.

Plant Cell Physiol. 2007 Feb;48(2):232-42. Epub 2006 Dec 13.

PMID:
17169919
50.

Mitochondrial metabolism in developing embryos of Brassica napus.

Schwender J, Shachar-Hill Y, Ohlrogge JB.

J Biol Chem. 2006 Nov 10;281(45):34040-7. Epub 2006 Sep 12.

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