Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 293


Ion-Ion Proton Transfer and Parallel Ion Parking for the Analysis of Mixtures of Intact Proteins on a Modified Orbitrap Mass Analyzer.

Ugrin SA, English AM, Syka JEP, Bai DL, Anderson LC, Shabanowitz J, Hunt DF.

J Am Soc Mass Spectrom. 2019 Oct 1;30(10):2163-2173.


Transcription factor binding at Ig enhancers is linked to somatic hypermutation targeting.

Dinesh RK, Barnhill B, Ilanges A, Wu L, Michelson DA, Senigl F, Alinikula J, Shabanowitz J, Hunt DF, Schatz DG.

Eur J Immunol. 2019 Dec 10. doi: 10.1002/eji.201948357. [Epub ahead of print]


Murine xenograft bioreactors for human immunopeptidome discovery.

Heather JM, Myers PT, Shi F, Aziz-Zanjani MO, Mahoney KE, Perez M, Morin B, Brittsan C, Shabanowitz J, Hunt DF, Cobbold M.

Sci Rep. 2019 Dec 6;9(1):18558. doi: 10.1038/s41598-019-54700-2.


Unambiguous Sequence Characterization of a Monoclonal Antibody in a Single Analysis Using a Nonspecific Immobilized Enzyme Reactor.

Hinkle JD, D'Ippolito RA, Panepinto MC, Wang WH, Bai DL, Shabanowitz J, Hunt DF.

Anal Chem. 2019 Nov 5;91(21):13547-13554. doi: 10.1021/acs.analchem.9b02666. Epub 2019 Oct 16.


Protamines from liverwort are produced by post-translational cleavage and C-terminal di-aminopropanelation of several male germ-specific H1 histones.

D'Ippolito RA, Minamino N, Rivera-Casas C, Cheema MS, Bai DL, Kasinsky HE, Shabanowitz J, Eirin-Lopez JM, Ueda T, Hunt DF, Ausió J.

J Biol Chem. 2019 Nov 1;294(44):16364-16373. doi: 10.1074/jbc.RA119.010316. Epub 2019 Sep 16.


Ion-Ion Proton Transfer and Parallel Ion Parking for the Analysis of Mixtures of Intact Proteins on a Modified Orbitrap Mass Analyzer.

Ugrin SA, English AM, Syka JEP, Bai DL, Anderson LC, Shabanowitz J, Hunt DF.

J Am Soc Mass Spectrom. 2019 Oct;30(10):2163-2173. doi: 10.1007/s13361-019-02290-8. Epub 2019 Aug 7.


O-GlcNAc Site Mapping by Using a Combination of Chemoenzymatic Labeling, Copper-Free Click Chemistry, Reductive Cleavage, and Electron-Transfer Dissociation Mass Spectrometry.

Ma J, Wang WH, Li Z, Shabanowitz J, Hunt DF, Hart GW.

Anal Chem. 2019 Feb 19;91(4):2620-2625. doi: 10.1021/acs.analchem.8b05688. Epub 2019 Feb 4.


OGT (O-GlcNAc Transferase) Selectively Modifies Multiple Residues Unique to Lamin A.

Simon DN, Wriston A, Fan Q, Shabanowitz J, Florwick A, Dharmaraj T, Peterson SB, Gruenbaum Y, Carlson CR, Grønning-Wang LM, Hunt DF, Wilson KL.

Cells. 2018 May 17;7(5). pii: E44. doi: 10.3390/cells7050044.


Phosphorylation coexists with O-GlcNAcylation in a plant virus protein and influences viral infection.

Martínez-Turiño S, Pérez JJ, Hervás M, Navajas R, Ciordia S, Udeshi ND, Shabanowitz J, Hunt DF, García JA.

Mol Plant Pathol. 2018 Jun;19(6):1427-1443. doi: 10.1111/mpp.12626. Epub 2018 Jan 30.


The antigenic identity of human class I MHC phosphopeptides is critically dependent upon phosphorylation status.

Mohammed F, Stones DH, Zarling AL, Willcox CR, Shabanowitz J, Cummings KL, Hunt DF, Cobbold M, Engelhard VH, Willcox BE.

Oncotarget. 2017 Apr 8;8(33):54160-54172. doi: 10.18632/oncotarget.16952. eCollection 2017 Aug 15.


Shared peptide binding of HLA Class I and II alleles associate with cutaneous nevirapine hypersensitivity and identify novel risk alleles.

Pavlos R, McKinnon EJ, Ostrov DA, Peters B, Buus S, Koelle D, Chopra A, Schutte R, Rive C, Redwood A, Restrepo S, Bracey A, Kaever T, Myers P, Speers E, Malaker SA, Shabanowitz J, Jing Y, Gaudieri S, Hunt DF, Carrington M, Haas DW, Mallal S, Phillips EJ.

Sci Rep. 2017 Aug 17;7(1):8653. doi: 10.1038/s41598-017-08876-0.


Front-End Electron Transfer Dissociation Coupled to a 21 Tesla FT-ICR Mass Spectrometer for Intact Protein Sequence Analysis.

Weisbrod CR, Kaiser NK, Syka JEP, Early L, Mullen C, Dunyach JJ, English AM, Anderson LC, Blakney GT, Shabanowitz J, Hendrickson CL, Marshall AG, Hunt DF.

J Am Soc Mass Spectrom. 2017 Sep;28(9):1787-1795. doi: 10.1007/s13361-017-1702-3. Epub 2017 Jul 18.


Canonical and Cross-reactive Binding of NK Cell Inhibitory Receptors to HLA-C Allotypes Is Dictated by Peptides Bound to HLA-C.

Sim MJ, Malaker SA, Khan A, Stowell JM, Shabanowitz J, Peterson ME, Rajagopalan S, Hunt DF, Altmann DM, Long EO, Boyton RJ.

Front Immunol. 2017 Mar 14;8:193. doi: 10.3389/fimmu.2017.00193. eCollection 2017.


Peptide-binding motifs of two common equine class I MHC molecules in Thoroughbred horses.

Bergmann T, Lindvall M, Moore E, Moore E, Sidney J, Miller D, Tallmadge RL, Myers PT, Malaker SA, Shabanowitz J, Osterrieder N, Peters B, Hunt DF, Antczak DF, Sette A.

Immunogenetics. 2017 May;69(5):351-358. doi: 10.1007/s00251-017-0978-6. Epub 2017 Mar 18.


Identification of Glycopeptides as Posttranslationally Modified Neoantigens in Leukemia.

Malaker SA, Penny SA, Steadman LG, Myers PT, Loke JC, Raghavan M, Bai DL, Shabanowitz J, Hunt DF, Cobbold M.

Cancer Immunol Res. 2017 May;5(5):376-384. doi: 10.1158/2326-6066.CIR-16-0280. Epub 2017 Mar 17.


The Arabidopsis O-fucosyltransferase SPINDLY activates nuclear growth repressor DELLA.

Zentella R, Sui N, Barnhill B, Hsieh WP, Hu J, Shabanowitz J, Boyce M, Olszewski NE, Zhou P, Hunt DF, Sun TP.

Nat Chem Biol. 2017 May;13(5):479-485. doi: 10.1038/nchembio.2320. Epub 2017 Feb 28.


A Dual Inhibitory Mechanism Sufficient to Maintain Cell-Cycle-Restricted CENP-A Assembly.

Stankovic A, Guo LY, Mata JF, Bodor DL, Cao XJ, Bailey AO, Shabanowitz J, Hunt DF, Garcia BA, Black BE, Jansen LET.

Mol Cell. 2017 Jan 19;65(2):231-246. doi: 10.1016/j.molcel.2016.11.021. Epub 2016 Dec 22.


Identification and Characterization of Complex Glycosylated Peptides Presented by the MHC Class II Processing Pathway in Melanoma.

Malaker SA, Ferracane MJ, Depontieu FR, Zarling AL, Shabanowitz J, Bai DL, Topalian SL, Engelhard VH, Hunt DF.

J Proteome Res. 2017 Jan 6;16(1):228-237. doi: 10.1021/acs.jproteome.6b00496. Epub 2016 Sep 13.


Analyses of Histone Proteoforms Using Front-end Electron Transfer Dissociation-enabled Orbitrap Instruments.

Anderson LC, Karch KR, Ugrin SA, Coradin M, English AM, Sidoli S, Shabanowitz J, Garcia BA, Hunt DF.

Mol Cell Proteomics. 2016 Mar;15(3):975-88. doi: 10.1074/mcp.O115.053843. Epub 2016 Jan 19.


O-GlcNAcylation of master growth repressor DELLA by SECRET AGENT modulates multiple signaling pathways in Arabidopsis.

Zentella R, Hu J, Hsieh WP, Matsumoto PA, Dawdy A, Barnhill B, Oldenhof H, Hartweck LM, Maitra S, Thomas SG, Cockrell S, Boyce M, Shabanowitz J, Hunt DF, Olszewski NE, Sun TP.

Genes Dev. 2016 Jan 15;30(2):164-76. doi: 10.1101/gad.270587.115.


Characterization of the peptide binding specificity of the HLA class I alleles B*38:01 and B*39:06.

Sidney J, Schloss J, Moore C, Lindvall M, Wriston A, Hunt DF, Shabanowitz J, DiLorenzo TP, Sette A.

Immunogenetics. 2016 Mar;68(3):231-6. doi: 10.1007/s00251-015-0898-2. Epub 2016 Jan 11.


Identification of the Post-translational Modifications Present in Centromeric Chromatin.

Bailey AO, Panchenko T, Shabanowitz J, Lehman SM, Bai DL, Hunt DF, Black BE, Foltz DR.

Mol Cell Proteomics. 2016 Mar;15(3):918-31. doi: 10.1074/mcp.M115.053710. Epub 2015 Dec 18.


Analysis of Monoclonal Antibody Sequence and Post-translational Modifications by Time-controlled Proteolysis and Tandem Mass Spectrometry.

Zhang L, English AM, Bai DL, Ugrin SA, Shabanowitz J, Ross MM, Hunt DF, Wang WH.

Mol Cell Proteomics. 2016 Apr;15(4):1479-88. doi: 10.1074/mcp.O115.056721. Epub 2015 Nov 29.


The common equine class I molecule Eqca-1*00101 (ELA-A3.1) is characterized by narrow peptide binding and T cell epitope repertoires.

Bergmann T, Moore C, Sidney J, Miller D, Tallmadge R, Harman RM, Oseroff C, Wriston A, Shabanowitz J, Hunt DF, Osterrieder N, Peters B, Antczak DF, Sette A.

Immunogenetics. 2015 Nov;67(11-12):675-89. doi: 10.1007/s00251-015-0872-z. Epub 2015 Sep 23.


Complementary IMAC enrichment methods for HLA-associated phosphopeptide identification by mass spectrometry.

Abelin JG, Trantham PD, Penny SA, Patterson AM, Ward ST, Hildebrand WH, Cobbold M, Bai DL, Shabanowitz J, Hunt DF.

Nat Protoc. 2015 Sep;10(9):1308-18. doi: 10.1038/nprot.2015.086. Epub 2015 Aug 6.


Acyclovir Has Low but Detectable Influence on HLA-B*57:01 Specificity without Inducing Hypersensitivity.

Metushi IG, Wriston A, Banerjee P, Gohlke BO, English AM, Lucas A, Moore C, Sidney J, Buus S, Ostrov DA, Mallal S, Phillips E, Shabanowitz J, Hunt DF, Preissner R, Peters B.

PLoS One. 2015 May 29;10(5):e0124878. doi: 10.1371/journal.pone.0124878. eCollection 2015.


A regulatory motif in nonmuscle myosin II-B regulates its role in migratory front-back polarity.

Juanes-Garcia A, Chapman JR, Aguilar-Cuenca R, Delgado-Arevalo C, Hodges J, Whitmore LA, Shabanowitz J, Hunt DF, Horwitz AR, Vicente-Manzanares M.

J Cell Biol. 2015 Apr 13;209(1):23-32. doi: 10.1083/jcb.201407059.


Protein derivatization and sequential ion/ion reactions to enhance sequence coverage produced by electron transfer dissociation mass spectrometry.

Anderson LC, English AM, Wang W, Bai DL, Shabanowitz J, Hunt DF.

Int J Mass Spectrom. 2015 Feb 1;377:617-624.


Peptide Sequence Analysis by Electron Transfer Dissociation Mass Spectrometry: A Web-Based Tutorial.

Hunt DF, Shabanowitz J, Bai DL.

J Am Soc Mass Spectrom. 2015 Jul;26(7):1256-8. doi: 10.1007/s13361-015-1105-2. Epub 2015 Mar 28.


Developmentally Regulated Post-translational Modification of Nucleoplasmin Controls Histone Sequestration and Deposition.

Onikubo T, Nicklay JJ, Xing L, Warren C, Anson B, Wang WL, Burgos ES, Ruff SE, Shabanowitz J, Cheng RH, Hunt DF, Shechter D.

Cell Rep. 2015 Mar 17;10(10):1735-1748. doi: 10.1016/j.celrep.2015.02.038. Epub 2015 Mar 12.


GSK3- and PRMT-1-dependent modifications of desmoplakin control desmoplakin-cytoskeleton dynamics.

Albrecht LV, Zhang L, Shabanowitz J, Purevjav E, Towbin JA, Hunt DF, Green KJ.

J Cell Biol. 2015 Mar 2;208(5):597-612. doi: 10.1083/jcb.201406020.


Phosphorylation and arginine methylation mark histone H2A prior to deposition during Xenopus laevis development.

Wang WL, Anderson LC, Nicklay JJ, Chen H, Gamble MJ, Shabanowitz J, Hunt DF, Shechter D.

Epigenetics Chromatin. 2014 Sep 6;7:22. doi: 10.1186/1756-8935-7-22. eCollection 2014.


Methylation of histone H3K23 blocks DNA damage in pericentric heterochromatin during meiosis.

Papazyan R, Voronina E, Chapman JR, Luperchio TR, Gilbert TM, Meier E, Mackintosh SG, Shabanowitz J, Tackett AJ, Reddy KL, Coyne RS, Hunt DF, Liu Y, Taverna SD.

Elife. 2014 Aug 26;3:e02996. doi: 10.7554/eLife.02996.


Cross-talk between two essential nutrient-sensitive enzymes: O-GlcNAc transferase (OGT) and AMP-activated protein kinase (AMPK).

Bullen JW, Balsbaugh JL, Chanda D, Shabanowitz J, Hunt DF, Neumann D, Hart GW.

J Biol Chem. 2014 Apr 11;289(15):10592-606. doi: 10.1074/jbc.M113.523068. Epub 2014 Feb 21.


Mitogen-activated protein kinase signaling mediates phosphorylation of polycomb ortholog Cbx7.

Wu HA, Balsbaugh JL, Chandler H, Georgilis A, Zullow H, Shabanowitz J, Hunt DF, Gil J, Peters G, Bernstein E.

J Biol Chem. 2013 Dec 20;288(51):36398-408. doi: 10.1074/jbc.M113.486266. Epub 2013 Nov 5.


Structure-based design of altered MHC class II-restricted peptide ligands with heterogeneous immunogenicity.

Chen S, Li Y, Depontieu FR, McMiller TL, English AM, Shabanowitz J, Kos F, Sidney J, Sette A, Rosenberg SA, Hunt DF, Mariuzza RA, Topalian SL.

J Immunol. 2013 Nov 15;191(10):5097-106. doi: 10.4049/jimmunol.1300467. Epub 2013 Oct 9.


MHC class I-associated phosphopeptides are the targets of memory-like immunity in leukemia.

Cobbold M, De La Peña H, Norris A, Polefrone JM, Qian J, English AM, Cummings KL, Penny S, Turner JE, Cottine J, Abelin JG, Malaker SA, Zarling AL, Huang HW, Goodyear O, Freeman SD, Shabanowitz J, Pratt G, Craddock C, Williams ME, Hunt DF, Engelhard VH.

Sci Transl Med. 2013 Sep 18;5(203):203ra125. doi: 10.1126/scitranslmed.3006061.


O-Linked β-N-acetylglucosamine (O-GlcNAc) regulates emerin binding to barrier to autointegration factor (BAF) in a chromatin- and lamin B-enriched "niche".

Berk JM, Maitra S, Dawdy AW, Shabanowitz J, Hunt DF, Wilson KL.

J Biol Chem. 2013 Oct 18;288(42):30192-209. doi: 10.1074/jbc.M113.503060. Epub 2013 Sep 6.


Front-end electron transfer dissociation: a new ionization source.

Earley L, Anderson LC, Bai DL, Mullen C, Syka JE, English AM, Dunyach JJ, Stafford GC Jr, Shabanowitz J, Hunt DF, Compton PD.

Anal Chem. 2013 Sep 3;85(17):8385-90. doi: 10.1021/ac401783f. Epub 2013 Aug 19.


Posttranslational modification of CENP-A influences the conformation of centromeric chromatin.

Bailey AO, Panchenko T, Sathyan KM, Petkowski JJ, Pai PJ, Bai DL, Russell DH, Macara IG, Shabanowitz J, Hunt DF, Black BE, Foltz DR.

Proc Natl Acad Sci U S A. 2013 Jul 16;110(29):11827-32. doi: 10.1073/pnas.1300325110. Epub 2013 Jul 1.


O-GlcNAc modification of the coat protein of the potyvirus Plum pox virus enhances viral infection.

Pérez Jde J, Udeshi ND, Shabanowitz J, Ciordia S, Juárez S, Scott CL, Olszewski NE, Hunt DF, García JA.

Virology. 2013 Aug 1;442(2):122-31. doi: 10.1016/j.virol.2013.03.029. Epub 2013 Apr 29.


Site-specific phosphorylation of the DNA damage response mediator rad9 by cyclin-dependent kinases regulates activation of checkpoint kinase 1.

Abreu CM, Kumar R, Hamilton D, Dawdy AW, Creavin K, Eivers S, Finn K, Balsbaugh JL, O'Connor R, Kiely PA, Shabanowitz J, Hunt DF, Grenon M, Lowndes NF.

PLoS Genet. 2013 Apr;9(4):e1003310. doi: 10.1371/journal.pgen.1003310. Epub 2013 Apr 4.


Peptide-binding motifs associated with MHC molecules common in Chinese rhesus macaques are analogous to those of human HLA supertypes and include HLA-B27-like alleles.

Mothé BR, Southwood S, Sidney J, English AM, Wriston A, Hoof I, Shabanowitz J, Hunt DF, Sette A.

Immunogenetics. 2013 May;65(5):371-86. doi: 10.1007/s00251-013-0686-9. Epub 2013 Feb 17.


Identification and origin of N-linked β-D-N-acetylglucosamine monosaccharide modifications on Arabidopsis proteins.

Kim YC, Jahren N, Stone MD, Udeshi ND, Markowski TW, Witthuhn BA, Shabanowitz J, Hunt DF, Olszewski NE.

Plant Physiol. 2013 Jan;161(1):455-64. doi: 10.1104/pp.112.208900. Epub 2012 Nov 8.


Trk activation of the ERK1/2 kinase pathway stimulates intermediate chain phosphorylation and recruits cytoplasmic dynein to signaling endosomes for retrograde axonal transport.

Mitchell DJ, Blasier KR, Jeffery ED, Ross MW, Pullikuth AK, Suo D, Park J, Smiley WR, Lo KW, Shabanowitz J, Deppmann CD, Trinidad JC, Hunt DF, Catling AD, Pfister KK.

J Neurosci. 2012 Oct 31;32(44):15495-510. doi: 10.1523/JNEUROSCI.5599-11.2012.


Substrate specificity of mammalian N-terminal α-amino methyltransferase NRMT.

Petkowski JJ, Schaner Tooley CE, Anderson LC, Shumilin IA, Balsbaugh JL, Shabanowitz J, Hunt DF, Minor W, Macara IG.

Biochemistry. 2012 Jul 31;51(30):5942-50. Epub 2012 Jul 19.


Drug hypersensitivity caused by alteration of the MHC-presented self-peptide repertoire.

Ostrov DA, Grant BJ, Pompeu YA, Sidney J, Harndahl M, Southwood S, Oseroff C, Lu S, Jakoncic J, de Oliveira CA, Yang L, Mei H, Shi L, Shabanowitz J, English AM, Wriston A, Lucas A, Phillips E, Mallal S, Grey HM, Sette A, Hunt DF, Buus S, Peters B.

Proc Natl Acad Sci U S A. 2012 Jun 19;109(25):9959-64. doi: 10.1073/pnas.1207934109. Epub 2012 May 29.


Tandem mass spectrometry identifies many mouse brain O-GlcNAcylated proteins including EGF domain-specific O-GlcNAc transferase targets.

Alfaro JF, Gong CX, Monroe ME, Aldrich JT, Clauss TR, Purvine SO, Wang Z, Camp DG 2nd, Shabanowitz J, Stanley P, Hart GW, Hunt DF, Yang F, Smith RD.

Proc Natl Acad Sci U S A. 2012 May 8;109(19):7280-5. doi: 10.1073/pnas.1200425109. Epub 2012 Apr 19.


Intestinal cell kinase (ICK) promotes activation of mTOR complex 1 (mTORC1) through phosphorylation of Raptor Thr-908.

Wu D, Chapman JR, Wang L, Harris TE, Shabanowitz J, Hunt DF, Fu Z.

J Biol Chem. 2012 Apr 6;287(15):12510-9. doi: 10.1074/jbc.M111.302117. Epub 2012 Feb 22.


Increasing peptide identifications and decreasing search times for ETD spectra by pre-processing and calculation of parent precursor charge.

Sridhara V, Bai DL, Chi A, Shabanowitz J, Hunt DF, Bryant SH, Geer LY.

Proteome Sci. 2012 Feb 9;10(1):8. doi: 10.1186/1477-5956-10-8.

Supplemental Content

Loading ...
Support Center