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Convolutional nets for reconstructing neural circuits from brain images acquired by serial section electron microscopy.

Lee K, Turner N, Macrina T, Wu J, Lu R, Seung HS.

Curr Opin Neurobiol. 2019 Apr;55:188-198. doi: 10.1016/j.conb.2019.04.001. Epub 2019 May 6. Review.


VAST (Volume Annotation and Segmentation Tool): Efficient Manual and Semi-Automatic Labeling of Large 3D Image Stacks.

Berger DR, Seung HS, Lichtman JW.

Front Neural Circuits. 2018 Oct 16;12:88. doi: 10.3389/fncir.2018.00088. eCollection 2018.


Digital Museum of Retinal Ganglion Cells with Dense Anatomy and Physiology.

Bae JA, Mu S, Kim JS, Turner NL, Tartavull I, Kemnitz N, Jordan CS, Norton AD, Silversmith WM, Prentki R, Sorek M, David C, Jones DL, Bland D, Sterling ALR, Park J, Briggman KL, Seung HS; Eyewirers.

Cell. 2018 May 17;173(5):1293-1306.e19. doi: 10.1016/j.cell.2018.04.040.


Electron Microscopic Reconstruction of Functionally Identified Cells in a Neural Integrator.

Vishwanathan A, Daie K, Ramirez AD, Lichtman JW, Aksay ERF, Seung HS.

Curr Biol. 2017 Jul 24;27(14):2137-2147.e3. doi: 10.1016/j.cub.2017.06.028. Epub 2017 Jul 14.


A solution to the single-question crowd wisdom problem.

Prelec D, Seung HS, McCoy J.

Nature. 2017 Jan 25;541(7638):532-535. doi: 10.1038/nature21054.


Analogous Convergence of Sustained and Transient Inputs in Parallel On and Off Pathways for Retinal Motion Computation.

Greene MJ, Kim JS, Seung HS; EyeWirers.

Cell Rep. 2016 Mar 1;14(8):1892-900. doi: 10.1016/j.celrep.2016.02.001. Epub 2016 Feb 18.


Simple, Scalable Proteomic Imaging for High-Dimensional Profiling of Intact Systems.

Murray E, Cho JH, Goodwin D, Ku T, Swaney J, Kim SY, Choi H, Park YG, Park JY, Hubbert A, McCue M, Vassallo S, Bakh N, Frosch MP, Wedeen VJ, Seung HS, Chung K.

Cell. 2015 Dec 3;163(6):1500-14. doi: 10.1016/j.cell.2015.11.025.


Crowdsourcing the creation of image segmentation algorithms for connectomics.

Arganda-Carreras I, Turaga SC, Berger DR, Cireşan D, Giusti A, Gambardella LM, Schmidhuber J, Laptev D, Dwivedi S, Buhmann JM, Liu T, Seyedhosseini M, Tasdizen T, Kamentsky L, Burget R, Uher V, Tan X, Sun C, Pham TD, Bas E, Uzunbas MG, Cardona A, Schindelin J, Seung HS.

Front Neuroanat. 2015 Nov 5;9:142. doi: 10.3389/fnana.2015.00142. eCollection 2015.


Saturated Reconstruction of a Volume of Neocortex.

Kasthuri N, Hayworth KJ, Berger DR, Schalek RL, Conchello JA, Knowles-Barley S, Lee D, Vázquez-Reina A, Kaynig V, Jones TR, Roberts M, Morgan JL, Tapia JC, Seung HS, Roncal WG, Vogelstein JT, Burns R, Sussman DL, Priebe CE, Pfister H, Lichtman JW.

Cell. 2015 Jul 30;162(3):648-61. doi: 10.1016/j.cell.2015.06.054.


Lentiviral vectors for retrograde delivery of recombinases and transactivators.

Wickersham IR, Sullivan HA, Pao GM, Hamanaka H, Goosens KA, Verma IM, Seung HS.

Cold Spring Harb Protoc. 2015 Apr 1;2015(4):368-74. doi: 10.1101/pdb.prot075879.


Mapping social behavior-induced brain activation at cellular resolution in the mouse.

Kim Y, Venkataraju KU, Pradhan K, Mende C, Taranda J, Turaga SC, Arganda-Carreras I, Ng L, Hawrylycz MJ, Rockland KS, Seung HS, Osten P.

Cell Rep. 2015 Jan 13;10(2):292-305. doi: 10.1016/j.celrep.2014.12.014. Epub 2014 Dec 31.


Automated computation of arbor densities: a step toward identifying neuronal cell types.

Sümbül U, Zlateski A, Vishwanathan A, Masland RH, Seung HS.

Front Neuroanat. 2014 Nov 25;8:139. doi: 10.3389/fnana.2014.00139. eCollection 2014.


Neuronal cell types and connectivity: lessons from the retina.

Seung HS, Sümbül U.

Neuron. 2014 Sep 17;83(6):1262-72. doi: 10.1016/j.neuron.2014.08.054. Review.


Space-time wiring specificity supports direction selectivity in the retina.

Kim JS, Greene MJ, Zlateski A, Lee K, Richardson M, Turaga SC, Purcaro M, Balkam M, Robinson A, Behabadi BF, Campos M, Denk W, Seung HS; EyeWirers.

Nature. 2014 May 15;509(7500):331-336. doi: 10.1038/nature13240. Epub 2014 May 4.


Distinct profiles of myelin distribution along single axons of pyramidal neurons in the neocortex.

Tomassy GS, Berger DR, Chen HH, Kasthuri N, Hayworth KJ, Vercelli A, Seung HS, Lichtman JW, Arlotta P.

Science. 2014 Apr 18;344(6181):319-24. doi: 10.1126/science.1249766.


Olfactory projectome in the zebrafish forebrain revealed by genetic single-neuron labelling.

Miyasaka N, Arganda-Carreras I, Wakisaka N, Masuda M, Sümbül U, Seung HS, Yoshihara Y.

Nat Commun. 2014 Apr 9;5:3639. doi: 10.1038/ncomms4639.


A genetic and computational approach to structurally classify neuronal types.

Sümbül U, Song S, McCulloch K, Becker M, Lin B, Sanes JR, Masland RH, Seung HS.

Nat Commun. 2014 Mar 24;5:3512. doi: 10.1038/ncomms4512. Erratum in: Nat Commun. 2014;5:4690.


Axonal and subcellular labelling using modified rabies viral vectors.

Wickersham IR, Sullivan HA, Seung HS.

Nat Commun. 2013;4:2332. doi: 10.1038/ncomms3332.


Connectomic reconstruction of the inner plexiform layer in the mouse retina.

Helmstaedter M, Briggman KL, Turaga SC, Jain V, Seung HS, Denk W.

Nature. 2013 Aug 8;500(7461):168-74. doi: 10.1038/nature12346. Erratum in: Nature. 2014 Oct 16;514(7522):394.


Pervasive synaptic branch removal in the mammalian neuromuscular system at birth.

Tapia JC, Wylie JD, Kasthuri N, Hayworth KJ, Schalek R, Berger DR, Guatimosim C, Seung HS, Lichtman JW.

Neuron. 2012 Jun 7;74(5):816-29. doi: 10.1016/j.neuron.2012.04.017.


Laminarly orthogonal excitation of fast-spiking and low-threshold-spiking interneurons in mouse motor cortex.

Apicella AJ, Wickersham IR, Seung HS, Shepherd GM.

J Neurosci. 2012 May 16;32(20):7021-33. doi: 10.1523/JNEUROSCI.0011-12.2012.


Hierarchical connectivity and connection-specific dynamics in the corticospinal-corticostriatal microcircuit in mouse motor cortex.

Kiritani T, Wickersham IR, Seung HS, Shepherd GM.

J Neurosci. 2012 Apr 4;32(14):4992-5001. doi: 10.1523/JNEUROSCI.4759-11.2012. Erratum in: J Neurosci. 2016 Sep 14;36(37):9755.


Serial two-photon tomography for automated ex vivo mouse brain imaging.

Ragan T, Kadiri LR, Venkataraju KU, Bahlmann K, Sutin J, Taranda J, Arganda-Carreras I, Kim Y, Seung HS, Osten P.

Nat Methods. 2012 Jan 15;9(3):255-8. doi: 10.1038/nmeth.1854.


Neuroscience: Towards functional connectomics.

Seung HS.

Nature. 2011 Mar 10;471(7337):170-2. doi: 10.1038/471170a. No abstract available.


Transgenic targeting of recombinant rabies virus reveals monosynaptic connectivity of specific neurons.

Weible AP, Schwarcz L, Wickersham IR, Deblander L, Wu H, Callaway EM, Seung HS, Kentros CG.

J Neurosci. 2010 Dec 8;30(49):16509-13. doi: 10.1523/JNEUROSCI.2442-10.2010.


Machines that learn to segment images: a crucial technology for connectomics.

Jain V, Seung HS, Turaga SC.

Curr Opin Neurobiol. 2010 Oct;20(5):653-66. doi: 10.1016/j.conb.2010.07.004. Review.


Production of glycoprotein-deleted rabies viruses for monosynaptic tracing and high-level gene expression in neurons.

Wickersham IR, Sullivan HA, Seung HS.

Nat Protoc. 2010 Mar;5(3):595-606. doi: 10.1038/nprot.2009.248. Epub 2010 Mar 4.


Convolutional networks can learn to generate affinity graphs for image segmentation.

Turaga SC, Murray JF, Jain V, Roth F, Helmstaedter M, Briggman K, Denk W, Seung HS.

Neural Comput. 2010 Feb;22(2):511-38. doi: 10.1162/neco.2009.10-08-881.


Operant matching as a Nash equilibrium of an intertemporal game.

Loewenstein Y, Prelec D, Seung HS.

Neural Comput. 2009 Oct;21(10):2755-73. doi: 10.1162/neco.2009.09-08-854.


Laser-evoked synaptic transmission in cultured hippocampal neurons expressing channelrhodopsin-2 delivered by adeno-associated virus.

Wang J, Hasan MT, Seung HS.

J Neurosci Methods. 2009 Oct 15;183(2):165-75. doi: 10.1016/j.jneumeth.2009.06.024. Epub 2009 Jun 26.


Reading the book of memory: sparse sampling versus dense mapping of connectomes.

Seung HS.

Neuron. 2009 Apr 16;62(1):17-29. doi: 10.1016/j.neuron.2009.03.020. Erratum in: Neuron. 2009 Jul 16;63(1):139.


Phase-referenced probe interferometer for biological surface profiling and displacement measurements.

Fang-Yen C, Chu MC, Seung HS, Dasari RR, Feld MS.

Rev Sci Instrum. 2007 Dec;78(12):123703. doi: 10.1063/1.2823976.


Model of birdsong learning based on gradient estimation by dynamic perturbation of neural conductances.

Fiete IR, Fee MS, Seung HS.

J Neurophysiol. 2007 Oct;98(4):2038-57. Epub 2007 Jul 25.


Imaging voltage-dependent cell motions with heterodyne Mach-Zehnder phase microscopy.

Fang-Yen C, Oh S, Park Y, Choi W, Song S, Seung HS, Dasari RR, Feld MS.

Opt Lett. 2007 Jun 1;32(11):1572-4.


Motor learning with unstable neural representations.

Rokni U, Richardson AG, Bizzi E, Seung HS.

Neuron. 2007 May 24;54(4):653-66.


Intrinsic bursting enhances the robustness of a neural network model of sequence generation by avian brain area HVC.

Jin DZ, Ramazanoğlu FM, Seung HS.

J Comput Neurosci. 2007 Dec;23(3):283-99. Epub 2007 Apr 18.


Operant matching is a generic outcome of synaptic plasticity based on the covariance between reward and neural activity.

Loewenstein Y, Seung HS.

Proc Natl Acad Sci U S A. 2006 Oct 10;103(41):15224-9. Epub 2006 Sep 28.


Neural voting machines.

Richards W, Seung HS, Pickard G.

Neural Netw. 2006 Oct;19(8):1161-7. Epub 2006 Sep 20.


Gradient learning in spiking neural networks by dynamic perturbation of conductances.

Fiete IR, Seung HS.

Phys Rev Lett. 2006 Jul 28;97(4):048104. Epub 2006 Jul 28.


Linear-Nonlinear-Poisson models of primate choice dynamics.

Corrado GS, Sugrue LP, Seung HS, Newsome WT.

J Exp Anal Behav. 2005 Nov;84(3):581-617.


Learning curves for stochastic gradient descent in linear feedforward networks.

Werfel J, Xie X, Seung HS.

Neural Comput. 2005 Dec;17(12):2699-718.


Tilt aftereffect and adaptation-induced changes in orientation tuning in visual cortex.

Jin DZ, Dragoi V, Sur M, Seung HS.

J Neurophysiol. 2005 Dec;94(6):4038-50. Epub 2005 Aug 31.


Novel potent antagonists of transient receptor potential channel, vanilloid subfamily member 1: structure-activity relationship of 1,3-diarylalkyl thioureas possessing new vanilloid equivalents.

Suh YG, Lee YS, Min KH, Park OH, Kim JK, Seung HS, Seo SY, Lee BY, Nam YH, Lee KO, Kim HD, Park HG, Lee J, Oh U, Lim JO, Kang SU, Kil MJ, Koo JY, Shin SS, Joo YH, Kim JK, Jeong YS, Kim SY, Park YH.

J Med Chem. 2005 Sep 8;48(18):5823-36.


Noncontact measurement of nerve displacement during action potential with a dual-beam low-coherence interferometer.

Fang-Yen C, Chu MC, Seung HS, Dasari RR, Feld MS.

Opt Lett. 2004 Sep 1;29(17):2028-30.


Light-directed electrical stimulation of neurons cultured on silicon wafers.

Starovoytov A, Choi J, Seung HS.

J Neurophysiol. 2005 Feb;93(2):1090-8. Epub 2004 Sep 22.


Learning in neural networks by reinforcement of irregular spiking.

Xie X, Seung HS.

Phys Rev E Stat Nonlin Soft Matter Phys. 2004 Apr;69(4 Pt 1):041909. Epub 2004 Apr 30.


Plasticity and tuning of the time course of analog persistent firing in a neural integrator.

Major G, Baker R, Aksay E, Seung HS, Tank DW.

Proc Natl Acad Sci U S A. 2004 May 18;101(20):7745-50. Epub 2004 May 10.


Plasticity and tuning by visual feedback of the stability of a neural integrator.

Major G, Baker R, Aksay E, Mensh B, Seung HS, Tank DW.

Proc Natl Acad Sci U S A. 2004 May 18;101(20):7739-44. Epub 2004 May 10.


Temporal sparseness of the premotor drive is important for rapid learning in a neural network model of birdsong.

Fiete IR, Hahnloser RH, Fee MS, Seung HS.

J Neurophysiol. 2004 Oct;92(4):2274-82. Epub 2004 Apr 7.

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