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Items: 40


Proximal femoral head transcriptome reveals novel candidate genes related to epiphysiolysis in broiler chickens.

de Oliveira Peixoto J, Savoldi IR, Ibelli AMG, Cantão ME, Jaenisch FRF, Giachetto PF, Settles ML, Zanella R, Marchesi JAP, Pandolfi JR, Coutinho LL, Ledur MC.

BMC Genomics. 2019 Dec 30;20(1):1031. doi: 10.1186/s12864-019-6411-9.


Additional Evidence for DDB2 T338M as a Genetic Risk Factor for Ocular Squamous Cell Carcinoma in Horses.

Singer-Berk MH, Knickelbein KE, Lounsberry ZT, Crausaz M, Vig S, Joshi N, Britton M, Settles ML, Reilly CM, Bentley E, Nunnery C, Dwyer A, Lassaline ME, Bellone RR.

Int J Genomics. 2019 Sep 15;2019:3610965. doi: 10.1155/2019/3610965. eCollection 2019.


Ultrahigh-Throughput Multiplexing and Sequencing of >500-Base-Pair Amplicon Regions on the Illumina HiSeq 2500 Platform.

Holm JB, Humphrys MS, Robinson CK, Settles ML, Ott S, Fu L, Yang H, Gajer P, He X, McComb E, Gravitt PE, Ghanem KG, Brotman RM, Ravel J.

mSystems. 2019 Feb 19;4(1). pii: e00029-19. doi: 10.1128/mSystems.00029-19. eCollection 2019 Jan-Feb.


Transcriptome Analysis of Salmonella Heidelberg after Exposure to Cetylpyridinium Chloride, Acidified Calcium Hypochlorite, and Peroxyacetic Acid.

Cadena M, Froenicke L, Britton M, Settles ML, Durbin-Johnson B, Kumimoto E, Gallardo RA, Ferreiro A, Chylkova T, Zhou H, Pitesky M.

J Food Prot. 2019 Jan;82(1):109-119. doi: 10.4315/0362-028X.JFP-18-235.


Fatherhood alters gene expression within the MPOA.

Seelke AMH, Bond JM, Simmons TC, Joshi N, Settles ML, Stolzenberg D, Rhemtulla M, Bales KL.

Environ Epigenet. 2018 Dec 12;4(4):dvy026. doi: 10.1093/eep/dvy026. eCollection 2018 Oct.


Whole transcriptome analysis of the pectoralis major muscle reveals molecular mechanisms involved with white striping in broiler chickens.

Marchesi JAP, Ibelli AMG, Peixoto JO, Cantão ME, Pandolfi JRC, Marciano CMM, Zanella R, Settles ML, Coutinho LL, Ledur MC.

Poult Sci. 2019 Feb 1;98(2):590-601. doi: 10.3382/ps/pey429.


Obesity treatment by epigallocatechin-3-gallate-regulated bile acid signaling and its enriched Akkermansia muciniphila.

Sheng L, Jena PK, Liu HX, Hu Y, Nagar N, Bronner DN, Settles ML, Bäumler AJ, Wan YY.

FASEB J. 2018 Jun 8:fj201800370R. doi: 10.1096/fj.201800370R. [Epub ahead of print]


High-Quality Complete Genome Sequences of Three Bovine Shiga Toxin-Producing Escherichia coli O177:H- (fliCH25) Isolates Harboring Virulent stx2 and Multiple Plasmids.

Sheng H, Duan M, Hunter SS, Minnich SA, Settles ML, New DD, Chase JR, Fagnan MW, Hovde CJ.

Genome Announc. 2018 Feb 15;6(7). pii: e01592-17. doi: 10.1128/genomeA.01592-17.


Human Milk Microbial Community Structure Is Relatively Stable and Related to Variations in Macronutrient and Micronutrient Intakes in Healthy Lactating Women.

Williams JE, Carrothers JM, Lackey KA, Beatty NF, York MA, Brooker SL, Shafii B, Price WJ, Settles ML, McGuire MA, McGuire MK.

J Nutr. 2017 Sep;147(9):1739-1748. doi: 10.3945/jn.117.248864. Epub 2017 Jul 19.


Unlocking the story in the swab: A new genotyping assay for the amphibian chytrid fungus Batrachochytrium dendrobatidis.

Byrne AQ, Rothstein AP, Poorten TJ, Erens J, Settles ML, Rosenblum EB.

Mol Ecol Resour. 2017 Nov;17(6):1283-1292. doi: 10.1111/1755-0998.12675. Epub 2017 May 3.


Erratum to: Small RNAs from a Big Genome: The piRNA Pathway and Transposable Elements in the Salamander Species Desmognathus fuscus.

Madison-Villar MJ, Sun C, Lau NC, Settles ML, Mueller RL.

J Mol Evol. 2017 Jan;84(1):67. doi: 10.1007/s00239-016-9769-1. No abstract available.


Small RNAs from a Big Genome: The piRNA Pathway and Transposable Elements in the Salamander Species Desmognathus fuscus.

Madison-Villar MJ, Sun C, Lau NC, Settles ML, Mueller RL.

J Mol Evol. 2016 Oct;83(3-4):126-136. Epub 2016 Oct 14. Erratum in: J Mol Evol. 2016 Dec 2;:.


A Phylogenomic Approach Based on PCR Target Enrichment and High Throughput Sequencing: Resolving the Diversity within the South American Species of Bartsia L. (Orobanchaceae).

Uribe-Convers S, Settles ML, Tank DC.

PLoS One. 2016 Feb 1;11(2):e0148203. doi: 10.1371/journal.pone.0148203. eCollection 2016.


Full Mitochondrial Genome Sequence of the Sugar Beet Wireworm Limonius californicus (Coleoptera: Elateridae), a Common Agricultural Pest.

Gerritsen AT, New DD, Robison BD, Rashed A, Hohenlohe P, Forney L, Rashidi M, Wilson CM, Settles ML.

Genome Announc. 2016 Jan 21;4(1). pii: e01628-15. doi: 10.1128/genomeA.01628-15.


Mitochondrial Genome Sequence of the Galápagos Endemic Land Snail Naesiotus nux.

Hunter SS, Settles ML, New DD, Parent CE, Gerritsen AT.

Genome Announc. 2016 Jan 21;4(1). pii: e01362-15. doi: 10.1128/genomeA.01362-15.


Evolutionary Paths That Expand Plasmid Host-Range: Implications for Spread of Antibiotic Resistance.

Loftie-Eaton W, Yano H, Burleigh S, Simmons RS, Hughes JM, Rogers LM, Hunter SS, Settles ML, Forney LJ, Ponciano JM, Top EM.

Mol Biol Evol. 2016 Apr;33(4):885-97. doi: 10.1093/molbev/msv339. Epub 2015 Dec 14.


The population genomics of rapid adaptation: disentangling signatures of selection and demography in white sands lizards.

Laurent S, Pfeifer SP, Settles ML, Hunter SS, Hardwick KM, Ormond L, Sousa VC, Jensen JD, Rosenblum EB.

Mol Ecol. 2016 Jan;25(1):306-23. doi: 10.1111/mec.13385. Epub 2015 Oct 30.


Fecal Microbial Community Structure Is Stable over Time and Related to Variation in Macronutrient and Micronutrient Intakes in Lactating Women.

Carrothers JM, York MA, Brooker SL, Lackey KA, Williams JE, Shafii B, Price WJ, Settles ML, McGuire MA, McGuire MK.

J Nutr. 2015 Oct;145(10):2379-88. doi: 10.3945/jn.115.211110. Epub 2015 Aug 26.


Draft Genome Sequence of Pseudomonas sp. nov. H2.

Loftie-Eaton W, Suzuki H, Bashford K, Heuer H, Stragier P, De Vos P, Settles ML, Top EM.

Genome Announc. 2015 Apr 2;3(2). pii: e00241-15. doi: 10.1128/genomeA.00241-15.


Vaginal microbiota of adolescent girls prior to the onset of menarche resemble those of reproductive-age women.

Hickey RJ, Zhou X, Settles ML, Erb J, Malone K, Hansmann MA, Shew ML, Van Der Pol B, Fortenberry JD, Forney LJ.

mBio. 2015 Mar 24;6(2). pii: e00097-15. doi: 10.1128/mBio.00097-15.


Fine-scale analysis of 16S rRNA sequences reveals a high level of taxonomic diversity among vaginal Atopobium spp.

Mendes-Soares H, Krishnan V, Settles ML, Ravel J, Brown CJ, Forney LJ.

Pathog Dis. 2015 Jun;73(4). pii: ftv020. doi: 10.1093/femspd/ftv020. Epub 2015 Mar 15.


Comparative analysis of microbial community of novel lactic acid fermentation inoculated with different undefined mixed cultures.

Liang S, Gliniewicz K, Mendes-Soares H, Settles ML, Forney LJ, Coats ER, McDonald AG.

Bioresour Technol. 2015 Mar;179:268-274. doi: 10.1016/j.biortech.2014.12.032. Epub 2014 Dec 17.


Influence of organic loading rate and solid retention time on polyhydroxybutyrate production from hybrid poplar hydrolysates using mixed microbial cultures.

Dai J, Gliniewicz K, Settles ML, Coats ER, McDonald AG.

Bioresour Technol. 2015 Jan;175:23-33. doi: 10.1016/j.biortech.2014.10.049. Epub 2014 Oct 17.


Prenatal exposure to BPA alters the epigenome of the rat mammary gland and increases the propensity to neoplastic development.

Dhimolea E, Wadia PR, Murray TJ, Settles ML, Treitman JD, Sonnenschein C, Shioda T, Soto AM.

PLoS One. 2014 Jul 2;9(7):e99800. doi: 10.1371/journal.pone.0099800. eCollection 2014.


Vaginal microbiome changes with levonorgestrel intrauterine system placement.

Jacobson JC, Turok DK, Dermish AI, Nygaard IE, Settles ML.

Contraception. 2014 Aug;90(2):130-5. doi: 10.1016/j.contraception.2014.04.006. Epub 2014 Apr 21.


Maternal bisphenol a exposure impacts the fetal heart transcriptome.

Chapalamadugu KC, Vandevoort CA, Settles ML, Robison BD, Murdoch GK.

PLoS One. 2014 Feb 25;9(2):e89096. doi: 10.1371/journal.pone.0089096. eCollection 2014.


Draft Genome Sequence of Pseudomonas moraviensis R28-S.

Hunter SS, Yano H, Loftie-Eaton W, Hughes J, De Gelder L, Stragier P, De Vos P, Settles ML, Top EM.

Genome Announc. 2014 Feb 20;2(1). pii: e00035-14. doi: 10.1128/genomeA.00035-14.


SlopMap: a software application tool for quick and flexible identification of similar sequences using exact k-mer matching.

Zhbannikov IY, Hunter SS, Settles ML, Foster JA.

J Data Mining Genomics Proteomics. 2013 Aug 1;4(3). doi: 10.4172/2153-0602.1000133.


Microbiota of the seminal fluid from healthy and infertile men.

Hou D, Zhou X, Zhong X, Settles ML, Herring J, Wang L, Abdo Z, Forney LJ, Xu C.

Fertil Steril. 2013 Nov;100(5):1261-9. doi: 10.1016/j.fertnstert.2013.07.1991. Epub 2013 Aug 29.


Sex-specific transcriptional responses of the zebrafish (Danio rerio) brain selenoproteome to acute sodium selenite supplementation.

Benner MJ, Settles ML, Murdoch GK, Hardy RW, Robison BD.

Physiol Genomics. 2013 Aug 1;45(15):653-66. doi: 10.1152/physiolgenomics.00030.2013. Epub 2013 Jun 4.


An improved algorithm for the detection of genomic variation using short oligonucleotide expression microarrays.

Settles ML, Coram T, Soule T, Robison BD.

Mol Ecol Resour. 2012 Nov;12(6):1079-89. doi: 10.1111/1755-0998.12006. Epub 2012 Sep 12.


Brain transcriptome variation among behaviorally distinct strains of zebrafish (Danio rerio).

Drew RE, Settles ML, Churchill EJ, Williams SM, Balli S, Robison BD.

BMC Genomics. 2012 Jul 20;13:323. doi: 10.1186/1471-2164-13-323.


Meta-analysis of two genome-wide association studies of bovine paratuberculosis.

Minozzi G, Williams JL, Stella A, Strozzi F, Luini M, Settles ML, Taylor JF, Whitlock RH, Zanella R, Neibergs HL.

PLoS One. 2012;7(3):e32578. doi: 10.1371/journal.pone.0032578. Epub 2012 Mar 2.


Experimental sink removal induces stress responses, including shifts in amino acid and phenylpropanoid metabolism, in soybean leaves.

Turner GW, Cuthbertson DJ, Voo SS, Settles ML, Grimes HD, Lange BM.

Planta. 2012 May;235(5):939-54. doi: 10.1007/s00425-011-1551-4. Epub 2011 Nov 23.


GSEA-SNP identifies genes associated with Johne's disease in cattle.

Neibergs HL, Settles ML, Whitlock RH, Taylor JF.

Mamm Genome. 2010 Aug;21(7-8):419-25. doi: 10.1007/s00335-010-9278-2. Epub 2010 Aug 13.


Identification of loci associated with tolerance to Johne's disease in Holstein cattle.

Zanella R, Settles ML, McKay SD, Schnabel R, Taylor J, Whitlock RH, Schukken Y, Van Kessel JS, Smith JM, Neibergs HL.

Anim Genet. 2011 Feb;42(1):28-38. doi: 10.1111/j.1365-2052.2010.02076.x.


Large-scale analysis of antisense transcription in wheat using the Affymetrix GeneChip Wheat Genome Array.

Coram TE, Settles ML, Chen X.

BMC Genomics. 2009 May 29;10:253. doi: 10.1186/1471-2164-10-253.


Transcriptome analysis of high-temperature adult-plant resistance conditioned by Yr39 during the wheat-Puccinia striiformis f. sp. tritici interaction.

Coram TE, Settles ML, Chen X.

Mol Plant Pathol. 2008 Jul;9(4):479-93. doi: 10.1111/j.1364-3703.2008.00476.x.


Surveying expression level polymorphism and single-feature polymorphism in near-isogenic wheat lines differing for the Yr5 stripe rust resistance locus.

Coram TE, Settles ML, Wang M, Chen X.

Theor Appl Genet. 2008 Aug;117(3):401-11. doi: 10.1007/s00122-008-0784-5. Epub 2008 May 10.


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