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Items: 1 to 50 of 100

1.

Yield Precursor Dislocation Avalanches in Small Crystals: The Irreversibility Transition.

Ni X, Zhang H, Liarte DB, McFaul LW, Dahmen KA, Sethna JP, Greer JR.

Phys Rev Lett. 2019 Jul 19;123(3):035501. doi: 10.1103/PhysRevLett.123.035501.

PMID:
31386460
2.

Visualizing probabilistic models and data with Intensive Principal Component Analysis.

Quinn KN, Clement CB, De Bernardis F, Niemack MD, Sethna JP.

Proc Natl Acad Sci U S A. 2019 Jul 9;116(28):13762-13767. doi: 10.1073/pnas.1817218116. Epub 2019 Jun 24.

PMID:
31235593
3.

Chebyshev Approximation and the Global Geometry of Model Predictions.

Quinn KN, Wilber H, Townsend A, Sethna JP.

Phys Rev Lett. 2019 Apr 19;122(15):158302. doi: 10.1103/PhysRevLett.122.158302.

PMID:
31050537
4.

Morphology of renormalization-group flow for the de Almeida-Thouless-Gardner universality class.

Charbonneau P, Hu Y, Raju A, Sethna JP, Yaida S.

Phys Rev E. 2019 Feb;99(2-1):022132. doi: 10.1103/PhysRevE.99.022132.

PMID:
30934357
5.

Computation of a Theoretical Membrane Phase Diagram and the Role of Phase in Lipid-Raft-Mediated Protein Organization.

Mitra ED, Whitehead SC, Holowka D, Baird B, Sethna JP.

J Phys Chem B. 2018 Apr 5;122(13):3500-3513. doi: 10.1021/acs.jpcb.7b10695. Epub 2018 Feb 21.

6.

Measuring nonlinear stresses generated by defects in 3D colloidal crystals.

Lin NY, Bierbaum M, Schall P, Sethna JP, Cohen I.

Nat Mater. 2016 Nov;15(11):1172-1176. doi: 10.1038/nmat4715. Epub 2016 Aug 1.

PMID:
27479210
7.

Scaling ansatz for the jamming transition.

Goodrich CP, Liu AJ, Sethna JP.

Proc Natl Acad Sci U S A. 2016 Aug 30;113(35):9745-50. doi: 10.1073/pnas.1601858113. Epub 2016 Aug 10.

8.

Pinning Susceptibility: The Effect of Dilute, Quenched Disorder on Jamming.

Graves AL, Nashed S, Padgett E, Goodrich CP, Liu AJ, Sethna JP.

Phys Rev Lett. 2016 Jun 10;116(23):235501. doi: 10.1103/PhysRevLett.116.235501. Epub 2016 Jun 10.

9.

Block copolymer self-assembly-directed synthesis of mesoporous gyroidal superconductors.

Robbins SW, Beaucage PA, Sai H, Tan KW, Werner JG, Sethna JP, DiSalvo FJ, Gruner SM, Van Dover RB, Wiesner U.

Sci Adv. 2016 Jan 29;2(1):e1501119. doi: 10.1126/sciadv.1501119. eCollection 2016 Jan.

10.

Weirdest Martensite: Smectic Liquid Crystal Microstructure and Weyl-Poincaré Invariance.

Liarte DB, Bierbaum M, Mosna RA, Kamien RD, Sethna JP.

Phys Rev Lett. 2016 Apr 8;116(14):147802. doi: 10.1103/PhysRevLett.116.147802. Epub 2016 Apr 4.

PMID:
27104728
11.

Visualization, coarsening, and flow dynamics of focal conic domains in simulated smectic-A liquid crystals.

Liarte DB, Bierbaum M, Zhang M, Leahy BD, Cohen I, Sethna JP.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Dec;92(6):062511. doi: 10.1103/PhysRevE.92.062511. Epub 2015 Dec 21.

PMID:
26764715
12.

You can run, you can hide: The epidemiology and statistical mechanics of zombies.

Alemi AA, Bierbaum M, Myers CR, Sethna JP.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015;92(5):052801. doi: 10.1103/PhysRevE.92.052801. Epub 2015 Nov 2.

PMID:
26651738
13.

Overshoot during phenotypic switching of cancer cell populations.

Sellerio AL, Ciusani E, Ben-Moshe NB, Coco S, Piccinini A, Myers CR, Sethna JP, Giampietro C, Zapperi S, La Porta CAM.

Sci Rep. 2015 Oct 23;5:15464. doi: 10.1038/srep15464.

14.

Crossover behavior in interface depinning.

Chen YJ, Zapperi S, Sethna JP.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Aug;92(2):022146. Epub 2015 Aug 27.

PMID:
26382382
15.

Perspective: Sloppiness and emergent theories in physics, biology, and beyond.

Transtrum MK, Machta BB, Brown KS, Daniels BC, Myers CR, Sethna JP.

J Chem Phys. 2015 Jul 7;143(1):010901. doi: 10.1063/1.4923066. Review.

PMID:
26156455
16.

DNA Y structure: a versatile, multidimensional single molecule assay.

Inman JT, Smith BY, Hall MA, Forties RA, Jin J, Sethna JP, Wang MD.

Nano Lett. 2014 Nov 12;14(11):6475-80. doi: 10.1021/nl503009d. Epub 2014 Oct 14.

17.

Mechanical properties of growing melanocytic nevi and the progression to melanoma.

Taloni A, Alemi AA, Ciusani E, Sethna JP, Zapperi S, La Porta CA.

PLoS One. 2014 Apr 7;9(4):e94229. doi: 10.1371/journal.pone.0094229. eCollection 2014.

18.

Parameter space compression underlies emergent theories and predictive models.

Machta BB, Chachra R, Transtrum MK, Sethna JP.

Science. 2013 Nov 1;342(6158):604-7. doi: 10.1126/science.1238723. Erratum in: Science. 2013 Nov 22;342(6161):931.

19.

Imaging atomic rearrangements in two-dimensional silica glass: watching silica's dance.

Huang PY, Kurasch S, Alden JS, Shekhawat A, Alemi AA, McEuen PL, Sethna JP, Kaiser U, Muller DA.

Science. 2013 Oct 11;342(6155):224-7. doi: 10.1126/science.1242248.

20.

Collective motion of humans in mosh and circle pits at heavy metal concerts.

Silverberg JL, Bierbaum M, Sethna JP, Cohen I.

Phys Rev Lett. 2013 May 31;110(22):228701. Epub 2013 May 29.

PMID:
23767754
21.

From damage percolation to crack nucleation through finite size criticality.

Shekhawat A, Zapperi S, Sethna JP.

Phys Rev Lett. 2013 May 3;110(18):185505. Epub 2013 Apr 29.

PMID:
23683218
22.

Critical droplet theory explains the glass formability of aqueous solutions.

Warkentin M, Sethna JP, Thorne RE.

Phys Rev Lett. 2013 Jan 4;110(1):015703. Epub 2013 Jan 3.

PMID:
23383808
23.

Quasi-periodic events in crystal plasticity and the self-organized avalanche oscillator.

Papanikolaou S, Dimiduk DM, Choi W, Sethna JP, Uchic MD, Woodward CF, Zapperi S.

Nature. 2012 Oct 25;490(7421):517-21. doi: 10.1038/nature11568.

PMID:
23099406
24.

Critical Casimir forces in cellular membranes.

Machta BB, Veatch SL, Sethna JP.

Phys Rev Lett. 2012 Sep 28;109(13):138101. Epub 2012 Sep 24.

25.

Structural susceptibility and separation of time scales in the van der Pol oscillator.

Chachra R, Transtrum MK, Sethna JP.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Aug;86(2 Pt 2):026712. Epub 2012 Aug 31.

PMID:
23005887
26.

Fracture strength of disordered media: universality, interactions, and tail asymptotics.

Manzato C, Shekhawat A, Nukala PK, Alava MJ, Sethna JP, Zapperi S.

Phys Rev Lett. 2012 Feb 10;108(6):065504. Epub 2012 Feb 10.

PMID:
22401086
27.

Avalanche spatial structure and multivariable scaling functions: sizes, heights, widths, and views through windows.

Chen YJ, Papanikolaou S, Sethna JP, Zapperi S, Durin G.

Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Dec;84(6 Pt 1):061103. Epub 2011 Dec 1.

PMID:
22304036
28.

Senescent cells in growing tumors: population dynamics and cancer stem cells.

La Porta CA, Zapperi S, Sethna JP.

PLoS Comput Biol. 2012 Jan;8(1):e1002316. doi: 10.1371/journal.pcbi.1002316. Epub 2012 Jan 19.

29.

Dielectric breakdown and avalanches at nonequilibrium metal-insulator transitions.

Shekhawat A, Papanikolaou S, Zapperi S, Sethna JP.

Phys Rev Lett. 2011 Dec 30;107(27):276401. Epub 2011 Dec 28.

PMID:
22243320
30.

Nucleation at the DNA supercoiling transition.

Daniels BC, Sethna JP.

Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Apr;83(4 Pt 1):041924. Epub 2011 Apr 26.

PMID:
21599217
31.

Geometry of nonlinear least squares with applications to sloppy models and optimization.

Transtrum MK, Machta BB, Sethna JP.

Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Mar;83(3 Pt 2):036701. Epub 2011 Mar 3.

PMID:
21517619
32.

Comment on "Sloppy models, parameter uncertainty, and the role of experimental design".

Chachra R, Transtrum MK, Sethna JP.

Mol Biosyst. 2011 Aug;7(8):2522; author reply 2523-4. doi: 10.1039/c1mb05046j. Epub 2011 Apr 19.

PMID:
21503370
33.

Minimal model of plasma membrane heterogeneity requires coupling cortical actin to criticality.

Machta BB, Papanikolaou S, Sethna JP, Veatch SL.

Biophys J. 2011 Apr 6;100(7):1668-77. doi: 10.1016/j.bpj.2011.02.029.

34.

Bending crystals: emergence of fractal dislocation structures.

Chen YS, Choi W, Papanikolaou S, Sethna JP.

Phys Rev Lett. 2010 Sep 3;105(10):105501. Epub 2010 Sep 1.

PMID:
20867529
35.

Intra-unit-cell electronic nematicity of the high-T(c) copper-oxide pseudogap states.

Lawler MJ, Fujita K, Lee J, Schmidt AR, Kohsaka Y, Kim CK, Eisaki H, Uchida S, Davis JC, Sethna JP, Kim EA.

Nature. 2010 Jul 15;466(7304):347-51. doi: 10.1038/nature09169.

PMID:
20631795
36.

Why are nonlinear fits to data so challenging?

Transtrum MK, Machta BB, Sethna JP.

Phys Rev Lett. 2010 Feb 12;104(6):060201. Epub 2010 Feb 10.

PMID:
20366807
37.

Discontinuities at the DNA supercoiling transition.

Daniels BC, Forth S, Sheinin MY, Wang MD, Sethna JP.

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Oct;80(4 Pt 1):040901. Epub 2009 Oct 15.

38.

Variational method for estimating the rate of convergence of Markov-chain Monte Carlo algorithms.

Casey FP, Waterfall JJ, Gutenkunst RN, Myers CR, Sethna JP.

Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Oct;78(4 Pt 2):046704. Epub 2008 Oct 20.

PMID:
18999558
39.

Anomalous conductance oscillations and half-metallicity in atomic Ag-O chains.

Strange M, Thygesen KS, Sethna JP, Jacobsen KW.

Phys Rev Lett. 2008 Aug 29;101(9):096804. Epub 2008 Aug 29.

PMID:
18851638
40.

Sloppiness, robustness, and evolvability in systems biology.

Daniels BC, Chen YJ, Sethna JP, Gutenkunst RN, Myers CR.

Curr Opin Biotechnol. 2008 Aug;19(4):389-95. doi: 10.1016/j.copbio.2008.06.008. Epub 2008 Jul 25. Review.

PMID:
18620054
41.

Abrupt buckling transition observed during the plectoneme formation of individual DNA molecules.

Forth S, Deufel C, Sheinin MY, Daniels B, Sethna JP, Wang MD.

Phys Rev Lett. 2008 Apr 11;100(14):148301. Epub 2008 Apr 8.

42.

Materials science. Crackling wires.

Sethna JP.

Science. 2007 Oct 12;318(5848):207-8. No abstract available.

PMID:
17932277
43.

Extracting falsifiable predictions from sloppy models.

Gutenkunst RN, Casey FP, Waterfall JJ, Myers CR, Sethna JP.

Ann N Y Acad Sci. 2007 Dec;1115:203-11. Epub 2007 Oct 9.

PMID:
17925353
44.

Universally sloppy parameter sensitivities in systems biology models.

Gutenkunst RN, Waterfall JJ, Casey FP, Brown KS, Myers CR, Sethna JP.

PLoS Comput Biol. 2007 Oct;3(10):1871-78. Epub 2007 Aug 15.

45.

Optimal experimental design in an epidermal growth factor receptor signalling and down-regulation model.

Casey FP, Baird D, Feng Q, Gutenkunst RN, Waterfall JJ, Myers CR, Brown KS, Cerione RA, Sethna JP.

IET Syst Biol. 2007 May;1(3):190-202.

PMID:
17591178
46.

Sloppy-model universality class and the Vandermonde matrix.

Waterfall JJ, Casey FP, Gutenkunst RN, Brown KS, Myers CR, Brouwer PW, Elser V, Sethna JP.

Phys Rev Lett. 2006 Oct 13;97(15):150601. Epub 2006 Oct 12.

PMID:
17155311
47.

Mesoscale theory of grains and cells: crystal plasticity and coarsening.

Limkumnerd S, Sethna JP.

Phys Rev Lett. 2006 Mar 10;96(9):095503. Epub 2006 Mar 8.

PMID:
16606276
48.

Bayesian error estimation in density-functional theory.

Mortensen JJ, Kaasbjerg K, Frederiksen SL, Nørskov JK, Sethna JP, Jacobsen KW.

Phys Rev Lett. 2005 Nov 18;95(21):216401. Epub 2005 Nov 15.

PMID:
16384163
49.

The statistical mechanics of complex signaling networks: nerve growth factor signaling.

Brown KS, Hill CC, Calero GA, Myers CR, Lee KH, Sethna JP, Cerione RA.

Phys Biol. 2004 Dec;1(3-4):184-95.

PMID:
16204838
50.

Vibration-assisted electron tunneling in C140 transistors.

Pasupathy AN, Park J, Chang C, Soldatov AV, Lebedkin S, Bialczak RC, Grose JE, Donev LA, Sethna JP, Ralph DC, McEuen PL.

Nano Lett. 2005 Feb;5(2):203-7.

PMID:
15794596

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