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Items: 39


Targeting redox heterogeneity to counteract drug tolerance in replicating Mycobacterium tuberculosis.

Mishra R, Kohli S, Malhotra N, Bandyopadhyay P, Mehta M, Munshi M, Adiga V, Ahuja VK, Shandil RK, Rajmani RS, Seshasayee ASN, Singh A.

Sci Transl Med. 2019 Nov 13;11(518). pii: eaaw6635. doi: 10.1126/scitranslmed.aaw6635.


Using stochastic cell division and death to probe minimal units of cellular replication.

Chib S, Das S, Venkatesan S, Seshasayee ASN, Thattai M.

New J Phys. 2018 Mar;20(3):035004. doi: 10.1088/1367-2630/aab197. Epub 2018 Mar 29.


Regulation of Global Transcription in Escherichia coli by Rsd and 6S RNA.

Lal A, Krishna S, Seshasayee ASN.

G3 (Bethesda). 2018 May 31;8(6):2079-2089. doi: 10.1534/g3.118.200265.


CRISPR-Cas-Mediated Gene Silencing Reveals RacR To Be a Negative Regulator of YdaS and YdaT Toxins in Escherichia coli K-12.

Bindal G, Krishnamurthi R, Seshasayee ASN, Rath D.

mSphere. 2017 Nov 22;2(6). pii: e00483-17. doi: 10.1128/mSphere.00483-17. eCollection 2017 Nov-Dec.


Repression of YdaS Toxin Is Mediated by Transcriptional Repressor RacR in the Cryptic rac Prophage of Escherichia coli K-12.

Krishnamurthi R, Ghosh S, Khedkar S, Seshasayee ASN.

mSphere. 2017 Nov 22;2(6). pii: e00392-17. doi: 10.1128/mSphere.00392-17. eCollection 2017 Nov-Dec.


Nucleoid-Associated Proteins: Genome Level Occupancy and Expression Analysis.

Singh P, Seshasayee ASN.

Methods Mol Biol. 2017;1624:85-97. doi: 10.1007/978-1-4939-7098-8_8.


Genomewide Mutational Diversity in Escherichia coli Population Evolving in Prolonged Stationary Phase.

Chib S, Ali F, Seshasayee ASN.

mSphere. 2017 May 24;2(3). pii: e00059-17. doi: 10.1128/mSphere.00059-17. eCollection 2017 May-Jun.


Comparative Genomics of Interreplichore Translocations in Bacteria: A Measure of Chromosome Topology?

Khedkar S, Seshasayee AS.

G3 (Bethesda). 2016 Jun 1;6(6):1597-606. doi: 10.1534/g3.116.028274.


Genome scale patterns of supercoiling in a bacterial chromosome.

Lal A, Dhar A, Trostel A, Kouzine F, Seshasayee AS, Adhya S.

Nat Commun. 2016 Mar 30;7:11055. doi: 10.1038/ncomms11055.


Restriction modification systems as engines of diversity.

Sneppen K, Semsey S, Seshasayee AS, Krishna S.

Front Microbiol. 2015 Jun 2;6:528. doi: 10.3389/fmicb.2015.00528. eCollection 2015.


Gene expression homeostasis and chromosome architecture.

Seshasayee AS.

Bioarchitecture. 2014;4(6):221-5. doi: 10.1080/19490992.2015.1040213. Epub 2015 May 21.


The genome-scale interplay amongst xenogene silencing, stress response and chromosome architecture in Escherichia coli.

Srinivasan R, Scolari VF, Lagomarsino MC, Seshasayee AS.

Nucleic Acids Res. 2015 Jan;43(1):295-308. doi: 10.1093/nar/gku1229. Epub 2014 Nov 27.


Genomic analysis reveals distinct concentration-dependent evolutionary trajectories for antibiotic resistance in Escherichia coli.

Mogre A, Sengupta T, Veetil RT, Ravi P, Seshasayee AS.

DNA Res. 2014 Dec;21(6):711-26. doi: 10.1093/dnares/dsu032. Epub 2014 Oct 3.


Genomic analysis reveals epistatic silencing of "expensive" genes in Escherichia coli K-12.

Srinivasan R, Chandraprakash D, Krishnamurthi R, Singh P, Scolari VF, Krishna S, Seshasayee AS.

Mol Biosyst. 2013 Aug;9(8):2021-33. doi: 10.1039/c3mb70035f. Epub 2013 May 9.


Genome sequencing unveils a novel sea enterotoxin-carrying PVL phage in Staphylococcus aureus ST772 from India.

Prabhakara S, Khedkar S, Shambat SM, Srinivasan R, Basu A, Norrby-Teglund A, Seshasayee AS, Arakere G.

PLoS One. 2013;8(3):e60013. doi: 10.1371/journal.pone.0060013. Epub 2013 Mar 27.


Draft genome sequence of Staphylococcus aureus ST672, an emerging disease clone from India.

Khedkar S, Prabhakara S, Loganathan RM, S C, Gowda M, Arakere G, Seshasayee AS.

J Bacteriol. 2012 Dec;194(24):6946-7. doi: 10.1128/JB.01868-12.


Draft genome sequence of Staphylococcus aureus 118 (ST772), a major disease clone from India.

Prabhakara S, Khedkar S, Loganathan RM, Chandana S, Gowda M, Arakere G, Seshasayee AS.

J Bacteriol. 2012 Jul;194(14):3727-8. doi: 10.1128/JB.00480-12.


Genomics of DNA cytosine methylation in Escherichia coli reveals its role in stationary phase transcription.

Kahramanoglou C, Prieto AI, Khedkar S, Haase B, Gupta A, Benes V, Fraser GM, Luscombe NM, Seshasayee AS.

Nat Commun. 2012 Jun 6;3:886. doi: 10.1038/ncomms1878.


Context-dependent conservation of DNA methyltransferases in bacteria.

Seshasayee AS, Singh P, Krishna S.

Nucleic Acids Res. 2012 Aug;40(15):7066-73. doi: 10.1093/nar/gks390. Epub 2012 May 9.


Evidence of non-random mutation rates suggests an evolutionary risk management strategy.

Martincorena I, Seshasayee AS, Luscombe NM.

Nature. 2012 May 3;485(7396):95-8. doi: 10.1038/nature10995.


Genomic analysis of DNA binding and gene regulation by homologous nucleoid-associated proteins IHF and HU in Escherichia coli K12.

Prieto AI, Kahramanoglou C, Ali RM, Fraser GM, Seshasayee AS, Luscombe NM.

Nucleic Acids Res. 2012 Apr;40(8):3524-37. doi: 10.1093/nar/gkr1236. Epub 2011 Dec 17.


Comparative genomics suggests differential deployment of linear and branched signaling across bacteria.

Seshasayee AS, Luscombe NM.

Mol Biosyst. 2011 Nov;7(11):3042-9. doi: 10.1039/c1mb05260h. Epub 2011 Aug 30.


An overview of prokaryotic transcription factors : a summary of function and occurrence in bacterial genomes.

Seshasayee AS, Sivaraman K, Luscombe NM.

Subcell Biochem. 2011;52:7-23. doi: 10.1007/978-90-481-9069-0_2. Review.


Direct and indirect effects of H-NS and Fis on global gene expression control in Escherichia coli.

Kahramanoglou C, Seshasayee AS, Prieto AI, Ibberson D, Schmidt S, Zimmermann J, Benes V, Fraser GM, Luscombe NM.

Nucleic Acids Res. 2011 Mar;39(6):2073-91. doi: 10.1093/nar/gkq934. Epub 2010 Nov 21.


Comparative genomics of cyclic-di-GMP signalling in bacteria: post-translational regulation and catalytic activity.

Seshasayee AS, Fraser GM, Luscombe NM.

Nucleic Acids Res. 2010 Oct;38(18):5970-81. doi: 10.1093/nar/gkq382. Epub 2010 May 18.


Principles of transcriptional regulation and evolution of the metabolic system in E. coli.

Seshasayee AS, Fraser GM, Babu MM, Luscombe NM.

Genome Res. 2009 Jan;19(1):79-91. doi: 10.1101/gr.079715.108. Epub 2008 Oct 3.


Complete genome sequence of uropathogenic Proteus mirabilis, a master of both adherence and motility.

Pearson MM, Sebaihia M, Churcher C, Quail MA, Seshasayee AS, Luscombe NM, Abdellah Z, Arrosmith C, Atkin B, Chillingworth T, Hauser H, Jagels K, Moule S, Mungall K, Norbertczak H, Rabbinowitsch E, Walker D, Whithead S, Thomson NR, Rather PN, Parkhill J, Mobley HL.

J Bacteriol. 2008 Jun;190(11):4027-37. doi: 10.1128/JB.01981-07. Epub 2008 Mar 28.


Transcriptomics and adaptive genomics of the asymptomatic bacteriuria Escherichia coli strain 83972.

Hancock V, Seshasayee AS, Ussery DW, Luscombe NM, Klemm P.

Mol Genet Genomics. 2008 May;279(5):523-34. doi: 10.1007/s00438-008-0330-9.


Activation of Candida rugosa lipase at alkane-aqueous interfaces: a molecular dynamics study.

James JJ, Lakshmi BS, Seshasayee AS, Gautam P.

FEBS Lett. 2007 Sep 18;581(23):4377-83. Epub 2007 Aug 14.


Transcriptional regulatory networks in bacteria: from input signals to output responses.

Seshasayee AS, Bertone P, Fraser GM, Luscombe NM.

Curr Opin Microbiol. 2006 Oct;9(5):511-9. Epub 2006 Aug 30. Review.


Social behavior of the yeast protein-protein interaction network.

Seshasayee AS.

In Silico Biol. 2006;6(1-2):127-30.


Role of hydrophobic interactions and salt-bridges in beta-hairpin folding.

Seshasayee AS, Raghunathan K, Sivaraman K, Pennathur G.

J Mol Model. 2006 Jan;12(2):197-204. Epub 2005 Oct 18.


Evidence of a double-lid movement in Pseudomonas aeruginosa lipase: insights from molecular dynamics simulations.

Cherukuvada SL, Seshasayee AS, Raghunathan K, Anishetty S, Pennathur G.

PLoS Comput Biol. 2005 Aug;1(3):e28. Epub 2005 Aug 12.


Promoter addresses: revelations from oligonucleotide profiling applied to the Escherichia coli genome.

Sivaraman K, Seshasayee AS, Swaminathan K, Muthukumaran G, Pennathur G.

Theor Biol Med Model. 2005 May 31;2:20.


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