Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 43

1.

Using stochastic cell division and death to probe minimal units of cellular replication.

Chib S, Das S, Venkatesan S, Seshasayee ASN, Thattai M.

New J Phys. 2018 Mar;20(3):035004. doi: 10.1088/1367-2630/aab197. Epub 2018 Mar 29.

3.

Regulation of Global Transcription in Escherichia coli by Rsd and 6S RNA.

Lal A, Krishna S, Seshasayee ASN.

G3 (Bethesda). 2018 May 31;8(6):2079-2089. doi: 10.1534/g3.118.200265.

4.

CRISPR-Cas-Mediated Gene Silencing Reveals RacR To Be a Negative Regulator of YdaS and YdaT Toxins in Escherichia coli K-12.

Bindal G, Krishnamurthi R, Seshasayee ASN, Rath D.

mSphere. 2017 Nov 22;2(6). pii: e00483-17. doi: 10.1128/mSphere.00483-17. eCollection 2017 Nov-Dec.

5.

Repression of YdaS Toxin Is Mediated by Transcriptional Repressor RacR in the Cryptic rac Prophage of Escherichia coli K-12.

Krishnamurthi R, Ghosh S, Khedkar S, Seshasayee ASN.

mSphere. 2017 Nov 22;2(6). pii: e00392-17. doi: 10.1128/mSphere.00392-17. eCollection 2017 Nov-Dec.

6.
7.

Nucleoid-Associated Proteins: Genome Level Occupancy and Expression Analysis.

Singh P, Seshasayee ASN.

Methods Mol Biol. 2017;1624:85-97. doi: 10.1007/978-1-4939-7098-8_8.

PMID:
28842878
8.

Genomewide Mutational Diversity in Escherichia coli Population Evolving in Prolonged Stationary Phase.

Chib S, Ali F, Seshasayee ASN.

mSphere. 2017 May 24;2(3). pii: e00059-17. doi: 10.1128/mSphere.00059-17. eCollection 2017 May-Jun.

9.

Genome-Wide Analysis of Polyadenylation Events in Schmidtea mediterranea.

Lakshmanan V, Bansal D, Kulkarni J, Poduval D, Krishna S, Sasidharan V, Anand P, Seshasayee A, Palakodeti D.

G3 (Bethesda). 2016 Oct 13;6(10):3035-3048. doi: 10.1534/g3.116.031120.

10.

Comparative Genomics of Interreplichore Translocations in Bacteria: A Measure of Chromosome Topology?

Khedkar S, Seshasayee AS.

G3 (Bethesda). 2016 Jun 1;6(6):1597-606. doi: 10.1534/g3.116.028274.

11.

Genome scale patterns of supercoiling in a bacterial chromosome.

Lal A, Dhar A, Trostel A, Kouzine F, Seshasayee AS, Adhya S.

Nat Commun. 2016 Mar 30;7:11055. doi: 10.1038/ncomms11055.

12.

Restriction modification systems as engines of diversity.

Sneppen K, Semsey S, Seshasayee AS, Krishna S.

Front Microbiol. 2015 Jun 2;6:528. doi: 10.3389/fmicb.2015.00528. eCollection 2015.

13.

Gene expression homeostasis and chromosome architecture.

Seshasayee AS.

Bioarchitecture. 2014;4(6):221-5. doi: 10.1080/19490992.2015.1040213. Epub 2015 May 21.

14.

The genome-scale interplay amongst xenogene silencing, stress response and chromosome architecture in Escherichia coli.

Srinivasan R, Scolari VF, Lagomarsino MC, Seshasayee AS.

Nucleic Acids Res. 2015 Jan;43(1):295-308. doi: 10.1093/nar/gku1229. Epub 2014 Nov 27.

15.

Genomic analysis reveals distinct concentration-dependent evolutionary trajectories for antibiotic resistance in Escherichia coli.

Mogre A, Sengupta T, Veetil RT, Ravi P, Seshasayee AS.

DNA Res. 2014 Dec;21(6):711-26. doi: 10.1093/dnares/dsu032. Epub 2014 Oct 3.

17.

Genome and transcriptome adaptation accompanying emergence of the definitive type 2 host-restricted Salmonella enterica serovar Typhimurium pathovar.

Kingsley RA, Kay S, Connor T, Barquist L, Sait L, Holt KE, Sivaraman K, Wileman T, Goulding D, Clare S, Hale C, Seshasayee A, Harris S, Thomson NR, Gardner P, Rabsch W, Wigley P, Humphrey T, Parkhill J, Dougan G.

MBio. 2013 Aug 27;4(5):e00565-13. doi: 10.1128/mBio.00565-13.

18.

Identification of neoblast- and regeneration-specific miRNAs in the planarian Schmidtea mediterranea.

Sasidharan V, Lu YC, Bansal D, Dasari P, Poduval D, Seshasayee A, Resch AM, Graveley BR, Palakodeti D.

RNA. 2013 Oct;19(10):1394-404. doi: 10.1261/rna.038653.113. Epub 2013 Aug 23.

19.

Genomic analysis reveals epistatic silencing of "expensive" genes in Escherichia coli K-12.

Srinivasan R, Chandraprakash D, Krishnamurthi R, Singh P, Scolari VF, Krishna S, Seshasayee AS.

Mol Biosyst. 2013 Aug;9(8):2021-33. doi: 10.1039/c3mb70035f. Epub 2013 May 9.

PMID:
23661089
20.

Genome sequencing unveils a novel sea enterotoxin-carrying PVL phage in Staphylococcus aureus ST772 from India.

Prabhakara S, Khedkar S, Shambat SM, Srinivasan R, Basu A, Norrby-Teglund A, Seshasayee AS, Arakere G.

PLoS One. 2013;8(3):e60013. doi: 10.1371/journal.pone.0060013. Epub 2013 Mar 27.

21.

Draft genome sequence of Staphylococcus aureus ST672, an emerging disease clone from India.

Khedkar S, Prabhakara S, Loganathan RM, S C, Gowda M, Arakere G, Seshasayee AS.

J Bacteriol. 2012 Dec;194(24):6946-7. doi: 10.1128/JB.01868-12.

22.

Predicting new indications for approved drugs using a proteochemometric method.

Dakshanamurthy S, Issa NT, Assefnia S, Seshasayee A, Peters OJ, Madhavan S, Uren A, Brown ML, Byers SW.

J Med Chem. 2012 Aug 9;55(15):6832-48. doi: 10.1021/jm300576q. Epub 2012 Jul 25.

23.

Draft genome sequence of Staphylococcus aureus 118 (ST772), a major disease clone from India.

Prabhakara S, Khedkar S, Loganathan RM, Chandana S, Gowda M, Arakere G, Seshasayee AS.

J Bacteriol. 2012 Jul;194(14):3727-8. doi: 10.1128/JB.00480-12.

24.

Genomics of DNA cytosine methylation in Escherichia coli reveals its role in stationary phase transcription.

Kahramanoglou C, Prieto AI, Khedkar S, Haase B, Gupta A, Benes V, Fraser GM, Luscombe NM, Seshasayee AS.

Nat Commun. 2012 Jun 6;3:886. doi: 10.1038/ncomms1878.

PMID:
22673913
25.

Context-dependent conservation of DNA methyltransferases in bacteria.

Seshasayee AS, Singh P, Krishna S.

Nucleic Acids Res. 2012 Aug;40(15):7066-73. doi: 10.1093/nar/gks390. Epub 2012 May 9.

26.

Evidence of non-random mutation rates suggests an evolutionary risk management strategy.

Martincorena I, Seshasayee AS, Luscombe NM.

Nature. 2012 May 3;485(7396):95-8. doi: 10.1038/nature10995.

PMID:
22522932
27.

Genomic analysis of DNA binding and gene regulation by homologous nucleoid-associated proteins IHF and HU in Escherichia coli K12.

Prieto AI, Kahramanoglou C, Ali RM, Fraser GM, Seshasayee AS, Luscombe NM.

Nucleic Acids Res. 2012 Apr;40(8):3524-37. doi: 10.1093/nar/gkr1236. Epub 2011 Dec 17.

28.

Comparative genomics suggests differential deployment of linear and branched signaling across bacteria.

Seshasayee AS, Luscombe NM.

Mol Biosyst. 2011 Nov;7(11):3042-9. doi: 10.1039/c1mb05260h. Epub 2011 Aug 30.

PMID:
21879110
29.

An overview of prokaryotic transcription factors : a summary of function and occurrence in bacterial genomes.

Seshasayee AS, Sivaraman K, Luscombe NM.

Subcell Biochem. 2011;52:7-23. doi: 10.1007/978-90-481-9069-0_2. Review.

PMID:
21557077
30.

Direct and indirect effects of H-NS and Fis on global gene expression control in Escherichia coli.

Kahramanoglou C, Seshasayee AS, Prieto AI, Ibberson D, Schmidt S, Zimmermann J, Benes V, Fraser GM, Luscombe NM.

Nucleic Acids Res. 2011 Mar;39(6):2073-91. doi: 10.1093/nar/gkq934. Epub 2010 Nov 21.

31.

Comparative genomics of cyclic-di-GMP signalling in bacteria: post-translational regulation and catalytic activity.

Seshasayee AS, Fraser GM, Luscombe NM.

Nucleic Acids Res. 2010 Oct;38(18):5970-81. doi: 10.1093/nar/gkq382. Epub 2010 May 18.

32.

Principles of transcriptional regulation and evolution of the metabolic system in E. coli.

Seshasayee AS, Fraser GM, Babu MM, Luscombe NM.

Genome Res. 2009 Jan;19(1):79-91. doi: 10.1101/gr.079715.108. Epub 2008 Oct 3.

33.

Complete genome sequence of uropathogenic Proteus mirabilis, a master of both adherence and motility.

Pearson MM, Sebaihia M, Churcher C, Quail MA, Seshasayee AS, Luscombe NM, Abdellah Z, Arrosmith C, Atkin B, Chillingworth T, Hauser H, Jagels K, Moule S, Mungall K, Norbertczak H, Rabbinowitsch E, Walker D, Whithead S, Thomson NR, Rather PN, Parkhill J, Mobley HL.

J Bacteriol. 2008 Jun;190(11):4027-37. doi: 10.1128/JB.01981-07. Epub 2008 Mar 28.

34.

Transcriptomics and adaptive genomics of the asymptomatic bacteriuria Escherichia coli strain 83972.

Hancock V, Seshasayee AS, Ussery DW, Luscombe NM, Klemm P.

Mol Genet Genomics. 2008 May;279(5):523-34. doi: 10.1007/s00438-008-0330-9.

35.

Codon choice in genes depends on flanking sequence information--implications for theoretical reverse translation.

Sivaraman K, Seshasayee A, Tarwater PM, Cole AM.

Nucleic Acids Res. 2008 Feb;36(3):e16. doi: 10.1093/nar/gkm1181. Epub 2008 Jan 18.

36.

Activation of Candida rugosa lipase at alkane-aqueous interfaces: a molecular dynamics study.

James JJ, Lakshmi BS, Seshasayee AS, Gautam P.

FEBS Lett. 2007 Sep 18;581(23):4377-83. Epub 2007 Aug 14.

38.

Transcriptional regulatory networks in bacteria: from input signals to output responses.

Seshasayee AS, Bertone P, Fraser GM, Luscombe NM.

Curr Opin Microbiol. 2006 Oct;9(5):511-9. Epub 2006 Aug 30. Review.

PMID:
16942903
39.

Social behavior of the yeast protein-protein interaction network.

Seshasayee AS.

In Silico Biol. 2006;6(1-2):127-30.

PMID:
16789919
40.

Role of hydrophobic interactions and salt-bridges in beta-hairpin folding.

Seshasayee AS, Raghunathan K, Sivaraman K, Pennathur G.

J Mol Model. 2006 Jan;12(2):197-204. Epub 2005 Oct 18.

PMID:
16231193
41.

Evidence of a double-lid movement in Pseudomonas aeruginosa lipase: insights from molecular dynamics simulations.

Cherukuvada SL, Seshasayee AS, Raghunathan K, Anishetty S, Pennathur G.

PLoS Comput Biol. 2005 Aug;1(3):e28. Epub 2005 Aug 12.

42.

Promoter addresses: revelations from oligonucleotide profiling applied to the Escherichia coli genome.

Sivaraman K, Seshasayee AS, Swaminathan K, Muthukumaran G, Pennathur G.

Theor Biol Med Model. 2005 May 31;2:20.

43.

Supplemental Content

Loading ...
Support Center