Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 58

1.

Compound-protein Interaction Prediction with End-to-end Learning of Neural Networks for Graphs and Sequences.

Tsubaki M, Tomii K, Sese J.

Bioinformatics. 2018 Jul 6. doi: 10.1093/bioinformatics/bty535. [Epub ahead of print]

PMID:
29982330
2.

EAGLE: Explicit Alternative Genome Likelihood Evaluator.

Kuo T, Frith MC, Sese J, Horton P.

BMC Med Genomics. 2018 Apr 20;11(Suppl 2):28. doi: 10.1186/s12920-018-0342-1.

3.

Identifying statistically significant combinatorial markers for survival analysis.

Relator RT, Terada A, Sese J.

BMC Med Genomics. 2018 Apr 20;11(Suppl 2):31. doi: 10.1186/s12920-018-0346-x.

4.

Thickness-modulated tungsten-carbon superconducting nanostructures grown by focused ion beam induced deposition for vortex pinning up to high magnetic fields.

Serrano IG, Sesé J, Guillamón I, Suderow H, Vieira S, Ibarra MR, De Teresa JM.

Beilstein J Nanotechnol. 2016 Nov 14;7:1698-1708. doi: 10.3762/bjnano.7.162. eCollection 2016.

5.

Genome assembly and annotation of Arabidopsis halleri, a model for heavy metal hyperaccumulation and evolutionary ecology.

Briskine RV, Paape T, Shimizu-Inatsugi R, Nishiyama T, Akama S, Sese J, Shimizu KK.

Mol Ecol Resour. 2017 Sep;17(5):1025-1036. doi: 10.1111/1755-0998.12604. Epub 2016 Oct 26.

PMID:
27671113
6.

Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism.

Novikova PY, Hohmann N, Nizhynska V, Tsuchimatsu T, Ali J, Muir G, Guggisberg A, Paape T, Schmid K, Fedorenko OM, Holm S, Säll T, Schlötterer C, Marhold K, Widmer A, Sese J, Shimizu KK, Weigel D, Krämer U, Koch MA, Nordborg M.

Nat Genet. 2016 Sep;48(9):1077-82. doi: 10.1038/ng.3617. Epub 2016 Jul 18.

7.

Conserved but Attenuated Parental Gene Expression in Allopolyploids: Constitutive Zinc Hyperaccumulation in the Allotetraploid Arabidopsis kamchatica.

Paape T, Hatakeyama M, Shimizu-Inatsugi R, Cereghetti T, Onda Y, Kenta T, Sese J, Shimizu KK.

Mol Biol Evol. 2016 Nov;33(11):2781-2800. Epub 2016 Jul 12.

8.

LAMPLINK: detection of statistically significant SNP combinations from GWAS data.

Terada A, Yamada R, Tsuda K, Sese J.

Bioinformatics. 2016 Nov 15;32(22):3513-3515. Epub 2016 Jul 13.

9.

Plant adaptive radiation mediated by polyploid plasticity in transcriptomes.

Shimizu-Inatsugi R, Terada A, Hirose K, Kudoh H, Sese J, Shimizu KK.

Mol Ecol. 2017 Jan;26(1):193-207. doi: 10.1111/mec.13738. Epub 2016 Aug 26.

PMID:
27352992
10.

Three-Axis Vector Nano Superconducting Quantum Interference Device.

Martínez-Pérez MJ, Gella D, Müller B, Morosh V, Wölbing R, Sesé J, Kieler O, Kleiner R, Koelle D.

ACS Nano. 2016 Sep 27;10(9):8308-15. doi: 10.1021/acsnano.6b02218. Epub 2016 Jun 28.

PMID:
27332709
11.

Extending the mutation spectrum for Galloway-Mowat syndrome to include homozygous missense mutations in the WDR73 gene.

Rosti RO, Dikoglu E, Zaki MS, Abdel-Salam G, Makhseed N, Sese JC, Musaev D, Rosti B, Harbert MJ, Jones MC, Vaux KK, Gleeson JG.

Am J Med Genet A. 2016 Apr;170A(4):992-8. doi: 10.1002/ajmg.a.37533. Epub 2016 Jan 5.

12.

COSMOS: accurate detection of somatic structural variations through asymmetric comparison between tumor and normal samples.

Yamagata K, Yamanishi A, Kokubu C, Takeda J, Sese J.

Nucleic Acids Res. 2016 May 5;44(8):e78. doi: 10.1093/nar/gkw026. Epub 2016 Feb 1.

13.

Screen-printed nanoparticles as anti-counterfeiting tags.

Campos-Cuerva C, Zieba M, Sebastian V, Martínez G, Sese J, Irusta S, Contamina V, Arruebo M, Santamaria J.

Nanotechnology. 2016 Mar 4;27(9):095702. doi: 10.1088/0957-4484/27/9/095702. Epub 2016 Jan 29.

PMID:
26822884
14.

Female sterility associated with increased clonal propagation suggests a unique combination of androdioecy and asexual reproduction in populations of Cardamine amara (Brassicaceae).

Tedder A, Helling M, Pannell JR, Shimizu-Inatsugi R, Kawagoe T, van Campen J, Sese J, Shimizu KK.

Ann Bot. 2015 Apr;115(5):763-76. doi: 10.1093/aob/mcv006. Epub 2015 Mar 16.

15.

Simulation and estimation of gene number in a biological pathway using almost complete saturation mutagenesis screening of haploid mouse cells.

Tokunaga M, Kokubu C, Maeda Y, Sese J, Horie K, Sugimoto N, Kinoshita T, Yusa K, Takeda J.

BMC Genomics. 2014 Nov 24;15:1016. doi: 10.1186/1471-2164-15-1016.

16.

Heterodimetallic [LnLn'] lanthanide complexes: toward a chemical design of two-qubit molecular spin quantum gates.

Aguilà D, Barrios LA, Velasco V, Roubeau O, Repollés A, Alonso PJ, Sesé J, Teat SJ, Luis F, Aromí G.

J Am Chem Soc. 2014 Oct 8;136(40):14215-22. doi: 10.1021/ja507809w. Epub 2014 Sep 26.

17.

High-resolution imaging of remanent state and magnetization reversal of superdomain structures in high-density cobalt antidot arrays.

Rodríguez LA, Magén C, Snoeck E, Gatel C, Castán-Guerrero C, Sesé J, García LM, Herrero-Albillos J, Bartolomé J, Bartolomé F, Ibarra MR.

Nanotechnology. 2014 Sep 26;25(38):385703. doi: 10.1088/0957-4484/25/38/385703. Epub 2014 Sep 2.

PMID:
25181396
18.

Genome-wide quantification of homeolog expression ratio revealed nonstochastic gene regulation in synthetic allopolyploid Arabidopsis.

Akama S, Shimizu-Inatsugi R, Shimizu KK, Sese J.

Nucleic Acids Res. 2014 Apr;42(6):e46. doi: 10.1093/nar/gkt1376. Epub 2014 Jan 13.

19.

Mn12 single molecule magnets deposited on μ-SQUID sensors: the role of interphases and structural modifications.

Bellido E, González-Monje P, Repollés A, Jenkins M, Sesé J, Drung D, Schurig T, Awaga K, Luis F, Ruiz-Molina D.

Nanoscale. 2013 Dec 21;5(24):12565-73. doi: 10.1039/c3nr02359a.

PMID:
24172940
20.

Statistical significance of combinatorial regulations.

Terada A, Okada-Hatakeyama M, Tsuda K, Sese J.

Proc Natl Acad Sci U S A. 2013 Aug 6;110(32):12996-3001. doi: 10.1073/pnas.1302233110. Epub 2013 Jul 23.

21.

Loss of the six3/6 controlling pathways might have resulted in pinhole-eye evolution in Nautilus.

Ogura A, Yoshida MA, Moritaki T, Okuda Y, Sese J, Shimizu KK, Sousounis K, Tsonis PA.

Sci Rep. 2013;3:1432. doi: 10.1038/srep01432.

22.
23.

Surface-confined molecular coolers for cryogenics.

Lorusso G, Jenkins M, González-Monje P, Arauzo A, Sesé J, Ruiz-Molina D, Roubeau O, Evangelisti M.

Adv Mater. 2013 Jun 4;25(21):2984-8. doi: 10.1002/adma.201204863. Epub 2013 Feb 12.

PMID:
23401287
24.

Magnetic field-induced dissipation-free state in superconducting nanostructures.

Córdoba R, Baturina TI, Sesé J, Mironov AY, De Teresa JM, Ibarra MR, Nasimov DA, Gutakovskii AK, Latyshev AV, Guillamón I, Suderow H, Vieira S, Baklanov MR, Palacios JJ, Vinokur VM.

Nat Commun. 2013;4:1437. doi: 10.1038/ncomms2437.

PMID:
23385582
25.

Genome-wide DNA methylation and gene expression analyses of monozygotic twins discordant for intelligence levels.

Yu CC, Furukawa M, Kobayashi K, Shikishima C, Cha PC, Sese J, Sugawara H, Iwamoto K, Kato T, Ando J, Toda T.

PLoS One. 2012;7(10):e47081. doi: 10.1371/journal.pone.0047081. Epub 2012 Oct 17.

26.

The mule.

Sese JC.

Nursing. 2012 Nov;42(11):42-3. doi: 10.1097/01.NURSE.0000421374.97993.23. No abstract available.

PMID:
23076317
27.

Fabrication and magnetic characterization of cobalt antidot arrays: effect of the surrounding continuous film.

Castán-Guerrero C, Sesé J, Bartolomé J, Bartolomé F, Herrero-Albillos J, Kronast F, Strichovanec P, Merazzo KJ, Vázquez M, Vavassori P, García LM.

J Nanosci Nanotechnol. 2012 Sep;12(9):7437-41.

PMID:
23035490
28.

Gd-based single-ion magnets with tunable magnetic anisotropy: molecular design of spin qubits.

Martínez-Pérez MJ, Cardona-Serra S, Schlegel C, Moro F, Alonso PJ, Prima-García H, Clemente-Juan JM, Evangelisti M, Gaita-Ariño A, Sesé J, van Slageren J, Coronado E, Luis F.

Phys Rev Lett. 2012 Jun 15;108(24):247213. Epub 2012 Jun 15.

PMID:
23004325
29.

Lanthanoid single-ion magnets based on polyoxometalates with a 5-fold symmetry: the series [LnP5W30O110]12- (Ln3+ = Tb, Dy, Ho, Er, Tm, and Yb).

Cardona-Serra S, Clemente-Juan JM, Coronado E, Gaita-Ariño A, Camón A, Evangelisti M, Luis F, Martínez-Pérez MJ, Sesé J.

J Am Chem Soc. 2012 Sep 12;134(36):14982-90. doi: 10.1021/ja305163t. Epub 2012 Aug 30.

PMID:
22894703
30.

Fragmenting gadolinium: mononuclear polyoxometalate-based magnetic coolers for ultra-low temperatures.

Martínez-Pérez MJ, Montero O, Evangelisti M, Luis F, Sesé J, Cardona-Serra S, Coronado E.

Adv Mater. 2012 Aug 16;24(31):4301-5. doi: 10.1002/adma.201200750. Epub 2012 Jun 21.

PMID:
22718245
31.

Molecular prototypes for spin-based CNOT and SWAP quantum gates.

Luis F, Repollés A, Martínez-Pérez MJ, Aguilà D, Roubeau O, Zueco D, Alonso PJ, Evangelisti M, Camón A, Sesé J, Barrios LA, Aromí G.

Phys Rev Lett. 2011 Sep 9;107(11):117203. Epub 2011 Sep 8.

PMID:
22026699
32.

Genome structure analysis of molluscs revealed whole genome duplication and lineage specific repeat variation.

Yoshida MA, Ishikura Y, Moritaki T, Shoguchi E, Shimizu KK, Sese J, Ogura A.

Gene. 2011 Sep 1;483(1-2):63-71. doi: 10.1016/j.gene.2011.05.027. Epub 2011 Jun 6.

PMID:
21672613
33.

Direct observation of stress accumulation and relaxation in small bundles of superconducting vortices in tungsten thin films.

Guillamón I, Suderow H, Vieira S, Sesé J, Córdoba R, De Teresa JM, Ibarra MR.

Phys Rev Lett. 2011 Feb 18;106(7):077001. Epub 2011 Feb 14.

PMID:
21405532
34.

In vitro homology search array comprehensively reveals highly conserved genes and their functional characteristics in non-sequenced species.

Ogura A, Yoshida MA, Fukuzaki M, Sese J.

BMC Genomics. 2010 Dec 2;11 Suppl 4:S9. doi: 10.1186/1471-2164-11-S4-S9.

35.

Prediction of the clinical phenotype of Fabry disease based on protein sequential and structural information.

Saito S, Ohno K, Sese J, Sugawara K, Sakuraba H.

J Hum Genet. 2010 Mar;55(3):175-8. doi: 10.1038/jhg.2010.5. Epub 2010 Feb 5.

PMID:
20139917
36.
37.

Nanoscale positioning of inorganic nanoparticles using biological ferritin arrays fabricated by dip-pen nanolithography.

Bellido E, de Miguel R, Sesé J, Ruiz-Molina D, Lostao A, Maspoch D.

Scanning. 2010 Jan-Feb;32(1):35-41. doi: 10.1002/sca.20162.

PMID:
20069633
38.

Probing and comparing electron doping and miss-site effects in Re-based double perovskites.

Blasco J, Sesé J, Rodríguez-Velamazán JA, Ritter C, Herrero-Martín J.

J Phys Condens Matter. 2009 May 27;21(21):216008. doi: 10.1088/0953-8984/21/21/216008. Epub 2009 May 1.

PMID:
21825573
39.

Mutual information estimation reveals global associations between stimuli and biological processes.

Suzuki T, Sugiyama M, Kanamori T, Sese J.

BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S52. doi: 10.1186/1471-2105-10-S1-S52.

40.

[Education of life science database managers].

Sese J, Ikemura T.

Tanpakushitsu Kakusan Koso. 2008 Jan;53(1):87-93. Review. Japanese. No abstract available.

PMID:
18186307
41.
42.

A large-scale full-length cDNA analysis to explore the budding yeast transcriptome.

Miura F, Kawaguchi N, Sese J, Toyoda A, Hattori M, Morishita S, Ito T.

Proc Natl Acad Sci U S A. 2006 Nov 21;103(47):17846-51. Epub 2006 Nov 13.

43.

Expression profiling of muscles from Fukuyama-type congenital muscular dystrophy and laminin-alpha 2 deficient congenital muscular dystrophy; is congenital muscular dystrophy a primary fibrotic disease?

Taniguchi M, Kurahashi H, Noguchi S, Sese J, Okinaga T, Tsukahara T, Guicheney P, Ozono K, Nishino I, Morishita S, Toda T.

Biochem Biophys Res Commun. 2006 Apr 7;342(2):489-502. Epub 2006 Feb 3.

PMID:
16487936
44.

Evaluation of image processing programs for accurate measurement of budding and fission yeast morphology.

Suzuki G, Sawai H, Ohtani M, Nogami S, Sano-Kumagai F, Saka A, Yukawa M, Saito TL, Sese J, Hirata D, Morishita S, Ohya Y.

Curr Genet. 2006 Apr;49(4):237-47. Epub 2006 Jan 6.

PMID:
16397764
45.

High-dimensional and large-scale phenotyping of yeast mutants.

Ohya Y, Sese J, Yukawa M, Sano F, Nakatani Y, Saito TL, Saka A, Fukuda T, Ishihara S, Oka S, Suzuki G, Watanabe M, Hirata A, Ohtani M, Sawai H, Fraysse N, Latgé JP, François JM, Aebi M, Tanaka S, Muramatsu S, Araki H, Sonoike K, Nogami S, Morishita S.

Proc Natl Acad Sci U S A. 2005 Dec 27;102(52):19015-20. Epub 2005 Dec 19.

46.

Data mining tools for the Saccharomyces cerevisiae morphological database.

Saito TL, Sese J, Nakatani Y, Sano F, Yukawa M, Ohya Y, Morishita S.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W753-7.

47.

5'SAGE: 5'-end Serial Analysis of Gene Expression database.

Kasai Y, Hashimoto S, Yamada T, Sese J, Sugano S, Matsushima K, Morishita S.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D550-2.

48.

5'-end SAGE for the analysis of transcriptional start sites.

Hashimoto S, Suzuki Y, Kasai Y, Morohoshi K, Yamada T, Sese J, Morishita S, Sugano S, Matsushima K.

Nat Biotechnol. 2004 Sep;22(9):1146-9. Epub 2004 Aug 8.

PMID:
15300261
49.

Constrained clusters of gene expression profiles with pathological features.

Sese J, Kurokawa Y, Monden M, Kato K, Morishita S.

Bioinformatics. 2004 Nov 22;20(17):3137-45. Epub 2004 Jun 24.

PMID:
15217814
50.

Gene expression profile in human leukocytes.

Hashimoto S, Nagai S, Sese J, Suzuki T, Obata A, Sato T, Toyoda N, Dong HY, Kurachi M, Nagahata T, Shizuno K, Morishita S, Matsushima K.

Blood. 2003 May 1;101(9):3509-13. Epub 2003 Jan 9.

Supplemental Content

Support Center