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Items: 28

1.

Trust is good, control is better: technical considerations in blood microbiome analysis.

Schierwagen R, Alvarez-Silva C, Servant F, Trebicka J, Lelouvier B, Arumugam M.

Gut. 2019 Jun 15. pii: gutjnl-2019-319123. doi: 10.1136/gutjnl-2019-319123. [Epub ahead of print] No abstract available.

2.

Blood Microbiome Profile in CKD : A Pilot Study.

Shah NB, Allegretti AS, Nigwekar SU, Kalim S, Zhao S, Lelouvier B, Servant F, Serena G, Thadhani RI, Raj DS, Fasano A.

Clin J Am Soc Nephrol. 2019 May 7;14(5):692-701. doi: 10.2215/CJN.12161018. Epub 2019 Apr 8.

PMID:
30962186
3.

Author Correction: Obese Subjects With Specific Gustatory Papillae Microbiota and Salivary Cues Display an Impairment to Sense Lipids.

Besnard P, Christensen JE, Brignot H, Bernard A, Passilly-Degrace P, Nicklaus S, Pais de Barros JP, Collet X, Lelouvier B, Servant F, Blasco-Baque V, Verges B, Lagrost L, Feron G, Burcelin R.

Sci Rep. 2018 Jun 22;8(1):9773. doi: 10.1038/s41598-018-27701-w.

4.

Obese Subjects With Specific Gustatory Papillae Microbiota and Salivary Cues Display an Impairment to Sense Lipids.

Besnard P, Christensen JE, Brignot H, Bernard A, Passilly-Degrace P, Nicklaus S, Pais de Barros JP, Collet X, Lelouvier B, Servant F, Blasco-Baque V, Verges B, Lagrost L, Feron G, Burcelin R.

Sci Rep. 2018 Apr 30;8(1):6742. doi: 10.1038/s41598-018-24619-1. Erratum in: Sci Rep. 2018 Jun 22;8(1):9773.

5.

Identification by highly sensitive 16S metagenomic sequencing of an unusual case of polymicrobial bacteremia.

Lelouvier B, Servant F, Delobel P, Courtney M, Elbaz M, Amar J.

J Infect. 2017 Sep;75(3):278-280. doi: 10.1016/j.jinf.2017.05.005. Epub 2017 May 20. No abstract available.

PMID:
28535999
6.

Reply.

Lelouvier B, Servant F, Courtney M, Burcelin R, Amar J.

Hepatology. 2017 May;65(5):1776-1777. doi: 10.1002/hep.28986. Epub 2017 Mar 30. No abstract available.

PMID:
27997979
7.

Changes in blood microbiota profiles associated with liver fibrosis in obese patients: A pilot analysis.

Lelouvier B, Servant F, Païssé S, Brunet AC, Benyahya S, Serino M, Valle C, Ortiz MR, Puig J, Courtney M, Federici M, Fernández-Real JM, Burcelin R, Amar J.

Hepatology. 2016 Dec;64(6):2015-2027. doi: 10.1002/hep.28829.

PMID:
27639192
8.

Triggering the adaptive immune system with commensal gut bacteria protects against insulin resistance and dysglycemia.

Pomié C, Blasco-Baque V, Klopp P, Nicolas S, Waget A, Loubières P, Azalbert V, Puel A, Lopez F, Dray C, Valet P, Lelouvier B, Servant F, Courtney M, Amar J, Burcelin R, Garidou L.

Mol Metab. 2016 Mar 28;5(6):392-403. doi: 10.1016/j.molmet.2016.03.004. eCollection 2016 Jun.

9.

Comprehensive description of blood microbiome from healthy donors assessed by 16S targeted metagenomic sequencing.

Païssé S, Valle C, Servant F, Courtney M, Burcelin R, Amar J, Lelouvier B.

Transfusion. 2016 May;56(5):1138-47. doi: 10.1111/trf.13477. Epub 2016 Feb 10.

PMID:
26865079
10.

The Characterization of Novel Tissue Microbiota Using an Optimized 16S Metagenomic Sequencing Pipeline.

Lluch J, Servant F, Païssé S, Valle C, Valière S, Kuchly C, Vilchez G, Donnadieu C, Courtney M, Burcelin R, Amar J, Bouchez O, Lelouvier B.

PLoS One. 2015 Nov 6;10(11):e0142334. doi: 10.1371/journal.pone.0142334. eCollection 2015.

11.

The Gut Microbiota Regulates Intestinal CD4 T Cells Expressing RORγt and Controls Metabolic Disease.

Garidou L, Pomié C, Klopp P, Waget A, Charpentier J, Aloulou M, Giry A, Serino M, Stenman L, Lahtinen S, Dray C, Iacovoni JS, Courtney M, Collet X, Amar J, Servant F, Lelouvier B, Valet P, Eberl G, Fazilleau N, Douin-Echinard V, Heymes C, Burcelin R.

Cell Metab. 2015 Jul 7;22(1):100-12. doi: 10.1016/j.cmet.2015.06.001.

12.

Diversity and linkage disequilibrium features in a composite public/private dent maize panel: consequences for association genetics as evaluated from a case study using flowering time.

Truntzler M, Ranc N, Sawkins MC, Nicolas S, Manicacci D, Lespinasse D, Ribière V, Galaup P, Servant F, Muller C, Madur D, Betran J, Charcosset A, Moreau L.

Theor Appl Genet. 2012 Aug;125(4):731-47. doi: 10.1007/s00122-012-1866-y. Epub 2012 May 24.

PMID:
22622520
13.

A new genomic resource dedicated to wood formation in Eucalyptus.

Rengel D, San Clemente H, Servant F, Ladouce N, Paux E, Wincker P, Couloux A, Sivadon P, Grima-Pettenati J.

BMC Plant Biol. 2009 Mar 27;9:36. doi: 10.1186/1471-2229-9-36.

14.

Elimination of redundant protein identifications in high throughput proteomics.

Kearney R, Blondeau F, McPherson P, Bell A, Servant F, Drapeau M, de Grandpre S, Jm Bergeron J.

Conf Proc IEEE Eng Med Biol Soc. 2005;5:4803-6.

PMID:
17281316
15.

Characterization of an RNA granule from developing brain.

Elvira G, Wasiak S, Blandford V, Tong XK, Serrano A, Fan X, del Rayo Sánchez-Carbente M, Servant F, Bell AW, Boismenu D, Lacaille JC, McPherson PS, DesGroseillers L, Sossin WS.

Mol Cell Proteomics. 2006 Apr;5(4):635-51. Epub 2005 Dec 12.

16.

Observation of vortex coalescence in the anisotropic spin-triplet superconductor Sr2RuO4.

Dolocan VO, Veauvy C, Servant F, Lejay P, Hasselbach K, Liu Y, Mailly D.

Phys Rev Lett. 2005 Aug 26;95(9):097004. Epub 2005 Aug 24.

PMID:
16197240
17.

Integrative annotation of 21,037 human genes validated by full-length cDNA clones.

Imanishi T, Itoh T, Suzuki Y, O'Donovan C, Fukuchi S, Koyanagi KO, Barrero RA, Tamura T, Yamaguchi-Kabata Y, Tanino M, Yura K, Miyazaki S, Ikeo K, Homma K, Kasprzyk A, Nishikawa T, Hirakawa M, Thierry-Mieg J, Thierry-Mieg D, Ashurst J, Jia L, Nakao M, Thomas MA, Mulder N, Karavidopoulou Y, Jin L, Kim S, Yasuda T, Lenhard B, Eveno E, Suzuki Y, Yamasaki C, Takeda J, Gough C, Hilton P, Fujii Y, Sakai H, Tanaka S, Amid C, Bellgard M, Bonaldo Mde F, Bono H, Bromberg SK, Brookes AJ, Bruford E, Carninci P, Chelala C, Couillault C, de Souza SJ, Debily MA, Devignes MD, Dubchak I, Endo T, Estreicher A, Eyras E, Fukami-Kobayashi K, Gopinath GR, Graudens E, Hahn Y, Han M, Han ZG, Hanada K, Hanaoka H, Harada E, Hashimoto K, Hinz U, Hirai M, Hishiki T, Hopkinson I, Imbeaud S, Inoko H, Kanapin A, Kaneko Y, Kasukawa T, Kelso J, Kersey P, Kikuno R, Kimura K, Korn B, Kuryshev V, Makalowska I, Makino T, Mano S, Mariage-Samson R, Mashima J, Matsuda H, Mewes HW, Minoshima S, Nagai K, Nagasaki H, Nagata N, Nigam R, Ogasawara O, Ohara O, Ohtsubo M, Okada N, Okido T, Oota S, Ota M, Ota T, Otsuki T, Piatier-Tonneau D, Poustka A, Ren SX, Saitou N, Sakai K, Sakamoto S, Sakate R, Schupp I, Servant F, Sherry S, Shiba R, Shimizu N, Shimoyama M, Simpson AJ, Soares B, Steward C, Suwa M, Suzuki M, Takahashi A, Tamiya G, Tanaka H, Taylor T, Terwilliger JD, Unneberg P, Veeramachaneni V, Watanabe S, Wilming L, Yasuda N, Yoo HS, Stodolsky M, Makalowski W, Go M, Nakai K, Takagi T, Kanehisa M, Sakaki Y, Quackenbush J, Okazaki Y, Hayashizaki Y, Hide W, Chakraborty R, Nishikawa K, Sugawara H, Tateno Y, Chen Z, Oishi M, Tonellato P, Apweiler R, Okubo K, Wagner L, Wiemann S, Strausberg RL, Isogai T, Auffray C, Nomura N, Gojobori T, Sugano S.

PLoS Biol. 2004 Jun;2(6):e162. Epub 2004 Apr 20. Erratum in: PLoS Biol. 2004 Jul;2(7):e256.

18.

The Proteome Analysis database: a tool for the in silico analysis of whole proteomes.

Pruess M, Fleischmann W, Kanapin A, Karavidopoulou Y, Kersey P, Kriventseva E, Mittard V, Mulder N, Phan I, Servant F, Apweiler R.

Nucleic Acids Res. 2003 Jan 1;31(1):414-7.

19.

Improvements to CluSTr: the database of SWISS-PROT+TrEMBL protein clusters.

Kriventseva EV, Servant F, Apweiler R.

Nucleic Acids Res. 2003 Jan 1;31(1):388-9.

20.

The InterPro Database, 2003 brings increased coverage and new features.

Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Barrell D, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley RR, Courcelle E, Das U, Durbin R, Falquet L, Fleischmann W, Griffiths-Jones S, Haft D, Harte N, Hulo N, Kahn D, Kanapin A, Krestyaninova M, Lopez R, Letunic I, Lonsdale D, Silventoinen V, Orchard SE, Pagni M, Peyruc D, Ponting CP, Selengut JD, Servant F, Sigrist CJ, Vaughan R, Zdobnov EM.

Nucleic Acids Res. 2003 Jan 1;31(1):315-8.

21.

Applications of InterPro in protein annotation and genome analysis.

Biswas M, O'Rourke JF, Camon E, Fraser G, Kanapin A, Karavidopoulou Y, Kersey P, Kriventseva E, Mittard V, Mulder N, Phan I, Servant F, Apweiler R.

Brief Bioinform. 2002 Sep;3(3):285-95.

PMID:
12230037
22.

ProDom: automated clustering of homologous domains.

Servant F, Bru C, Carrère S, Courcelle E, Gouzy J, Peyruc D, Kahn D.

Brief Bioinform. 2002 Sep;3(3):246-51.

PMID:
12230033
23.

InterPro: an integrated documentation resource for protein families, domains and functional sites.

Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley R, Courcelle E, Durbin R, Falquet L, Fleischmann W, Gouzy J, Griffith-Jones S, Haft D, Hermjakob H, Hulo N, Kahn D, Kanapin A, Krestyaninova M, Lopez R, Letunic I, Orchard S, Pagni M, Peyruc D, Ponting CP, Servant F, Sigrist CJ; InterPro Consortium.

Brief Bioinform. 2002 Sep;3(3):225-35.

PMID:
12230031
24.

Interactive InterPro-based comparisons of proteins in whole genomes.

Kanapin A, Apweiler R, Biswas M, Fleischmann W, Karavidopoulou Y, Kersey P, Kriventseva EV, Mittard V, Mulder N, Oinn T, Phan I, Servant F, Zdobnov E.

Bioinformatics. 2002 Feb;18(2):374-5.

PMID:
11847096
25.

InterPro--an integrated documentation resource for protein families, domains and functional sites.

Apweiler R, Attwood TK, Bairoch A, Bateman A, Birney E, Biswas M, Bucher P, Cerutti L, Corpet F, Croning MD, Durbin R, Falquet L, Fleischmann W, Gouzy J, Hermjakob H, Hulo N, Jonassen I, Kahn D, Kanapin A, Karavidopoulou Y, Lopez R, Marx B, Mulder NJ, Oinn TM, Pagni M, Servant F, Sigrist CJ, Zdobnov EM; InterPro Consortium.

Bioinformatics. 2000 Dec;16(12):1145-50.

PMID:
11159333
26.

The InterPro database, an integrated documentation resource for protein families, domains and functional sites.

Apweiler R, Attwood TK, Bairoch A, Bateman A, Birney E, Biswas M, Bucher P, Cerutti L, Corpet F, Croning MD, Durbin R, Falquet L, Fleischmann W, Gouzy J, Hermjakob H, Hulo N, Jonassen I, Kahn D, Kanapin A, Karavidopoulou Y, Lopez R, Marx B, Mulder NJ, Oinn TM, Pagni M, Servant F, Sigrist CJ, Zdobnov EM.

Nucleic Acids Res. 2001 Jan 1;29(1):37-40.

27.

ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons.

Corpet F, Servant F, Gouzy J, Kahn D.

Nucleic Acids Res. 2000 Jan 1;28(1):267-9.

28.

[Study of the relationship between Vernes units and apparent D. O. determined with different photometers. II. Sandor's reticuloendothelial index].

Manet L, de Saint-Stéban J, Sorensen C, Servant F.

Ann Biol Clin (Paris). 1965 Oct-Dec;23(10):1221-6. French. No abstract available.

PMID:
5853625

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