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Items: 1 to 50 of 79

1.

Human Migration and the Spread of the Nematode Parasite Wuchereria bancrofti.

Small ST, Labbé F, Coulibaly YI, Nutman TB, King CL, Serre D, Zimmerman PA.

Mol Biol Evol. 2019 Sep 1;36(9):1931-1941. doi: 10.1093/molbev/msz116.

PMID:
31077328
2.

Plasmodium vivax transcriptomes reveal stage-specific chloroquine response and differential regulation of male and female gametocytes.

Kim A, Popovici J, Menard D, Serre D.

Nat Commun. 2019 Jan 22;10(1):371. doi: 10.1038/s41467-019-08312-z.

3.

A high-throughput sequencing assay to comprehensively detect and characterize unicellular eukaryotes and helminths from biological and environmental samples.

Cannon MV, Bogale H, Rutt L, Humphrys M, Korpe P, Duggal P, Ravel J, Serre D.

Microbiome. 2018 Oct 29;6(1):195. doi: 10.1186/s40168-018-0581-6.

4.

Genetic diversity in two Plasmodium vivax protein ligands for reticulocyte invasion.

Roesch C, Popovici J, Bin S, Run V, Kim S, Ramboarina S, Rakotomalala E, Rakotoarison RL, Rasoloharimanana T, Andriamanantena Z, Kumar A, Guillotte-Blisnick M, Huon C, Serre D, Chitnis CE, Vigan-Womas I, Menard D.

PLoS Negl Trop Dis. 2018 Oct 22;12(10):e0006555. doi: 10.1371/journal.pntd.0006555. eCollection 2018 Oct.

5.

Accelerated BRAF mutation analysis using a fully automated PCR platform improves the management of patients with metastatic melanoma.

Serre D, Salleron J, Husson M, Leroux A, Gilson P, Merlin JL, Geoffrois L, Harlé A.

Oncotarget. 2018 Aug 14;9(63):32232-32237. doi: 10.18632/oncotarget.25957. eCollection 2018 Aug 14.

6.

Factors shaping the gut bacterial community assembly in two main Colombian malaria vectors.

Bascuñán P, Niño-Garcia JP, Galeano-Castañeda Y, Serre D, Correa MM.

Microbiome. 2018 Aug 27;6(1):148. doi: 10.1186/s40168-018-0528-y.

7.

Recrudescence, Reinfection, or Relapse? A More Rigorous Framework to Assess Chloroquine Efficacy for Plasmodium vivax Malaria.

Popovici J, Pierce-Friedrich L, Kim S, Bin S, Run V, Lek D, Hee KHD, Lee Soon-U L, Cannon MV, Serre D, Menard D.

J Infect Dis. 2019 Jan 7;219(2):315-322. doi: 10.1093/infdis/jiy484.

PMID:
30102351
8.

Therapeutic and Transmission-Blocking 
Efficacy of Dihydroartemisinin/Piperaquine and Chloroquine against Plasmodium vivax Malaria, Cambodia.

Popovici J, Vantaux A, Primault L, Samreth R, Piv EP, Bin S, Kim S, Lek D, Serre D, Menard D.

Emerg Infect Dis. 2018 Aug;24(8):1516-1519. doi: 10.3201/eid2408.170768. Epub 2018 Aug 17.

9.

Options for treating different soft tissue sarcoma subtypes.

Ray-Coquard I, Serre D, Reichardt P, Martín-Broto J, Bauer S.

Future Oncol. 2018 May;14(10s):25-49. doi: 10.2217/fon-2018-0076. Review.

PMID:
29768052
10.

Genomic Analyses Reveal the Common Occurrence and Complexity of Plasmodium vivax Relapses in Cambodia.

Popovici J, Friedrich LR, Kim S, Bin S, Run V, Lek D, Cannon MV, Menard D, Serre D.

MBio. 2018 Jan 23;9(1). pii: e01888-17. doi: 10.1128/mBio.01888-17.

11.

Copper(II) complexes of N3O tripodal ligands appended with pyrene and polyamine groups: Anti-proliferative and nuclease activities.

Serre D, Erbek S, Berthet N, Ronot X, Martel-Frachet V, Thomas F.

J Inorg Biochem. 2018 Feb;179:121-134. doi: 10.1016/j.jinorgbio.2017.11.006. Epub 2017 Nov 11.

PMID:
29222969
12.

Draft genome sequence of the Wolbachia endosymbiont of Wuchereria bancrofti wWb.

Chung M, Small ST, Serre D, Zimmerman PA, Dunning Hotopp JC.

Pathog Dis. 2017 Dec 29;75(9). doi: 10.1093/femspd/ftx115.

13.

Dynamic microbial populations along the Cuyahoga River.

Cannon MV, Craine J, Hester J, Shalkhauser A, Chan ER, Logue K, Small S, Serre D.

PLoS One. 2017 Oct 19;12(10):e0186290. doi: 10.1371/journal.pone.0186290. eCollection 2017.

14.

Characterization of P. vivax blood stage transcriptomes from field isolates reveals similarities among infections and complex gene isoforms.

Kim A, Popovici J, Vantaux A, Samreth R, Bin S, Kim S, Roesch C, Liang L, Davies H, Felgner P, Herrera S, Arévalo-Herrera M, Ménard D, Serre D.

Sci Rep. 2017 Aug 10;7(1):7761. doi: 10.1038/s41598-017-07275-9.

15.

Extensive Epigenetic Changes Accompany Terminal Differentiation of Mouse Hepatocytes After Birth.

Cannon MV, Pilarowski G, Liu X, Serre D.

G3 (Bethesda). 2016 Nov 8;6(11):3701-3709. doi: 10.1534/g3.116.034785.

16.

Genomic Analysis Reveals a Common Breakpoint in Amplifications of the Plasmodium vivax Multidrug Resistance 1 Locus in Thailand.

Auburn S, Serre D, Pearson RD, Amato R, Sriprawat K, To S, Handayuni I, Suwanarusk R, Russell B, Drury E, Stalker J, Miotto O, Kwiatkowski DP, Nosten F, Price RN.

J Infect Dis. 2016 Oct 15;214(8):1235-42. doi: 10.1093/infdis/jiw323. Epub 2016 Jul 24.

17.

Pediatric Tuberculosis in Italian Children: Epidemiological and Clinical Data from the Italian Register of Pediatric Tuberculosis.

Galli L, Lancella L, Tersigni C, Venturini E, Chiappini E, Bergamini BM, Codifava M, Venturelli C, Tosetti G, Marabotto C, Cursi L, Boccuzzi E, Garazzino S, Tovo PA, Pinon M, Le Serre D, Castiglioni L, Lo Vecchio A, Guarino A, Bruzzese E, Losurdo G, Castagnola E, Bossi G, Marseglia GL, Esposito S, Bosis S, Grandolfo R, Fiorito V, Valentini P, Buonsenso D, Domenici R, Montesanti M, Salvini FM, Riva E, Dodi I, Maschio F, Abbagnato L, Fiumana E, Fornabaio C, Ballista P, Portelli V, Bottone G, Palladino N, Valenzise M, Vecchi B, Di Gangi M, Lupi C, Villani A, de Martino M.

Int J Mol Sci. 2016 Jun 17;17(6). pii: E960. doi: 10.3390/ijms17060960.

18.

Complexity of Infection and Genetic Diversity in Cambodian Plasmodium vivax.

Friedrich LR, Popovici J, Kim S, Dysoley L, Zimmerman PA, Menard D, Serre D.

PLoS Negl Trop Dis. 2016 Mar 28;10(3):e0004526. doi: 10.1371/journal.pntd.0004526. eCollection 2016 Mar.

19.

In silico assessment of primers for eDNA studies using PrimerTree and application to characterize the biodiversity surrounding the Cuyahoga River.

Cannon MV, Hester J, Shalkhauser A, Chan ER, Logue K, Small ST, Serre D.

Sci Rep. 2016 Mar 11;6:22908. doi: 10.1038/srep22908.

20.

Unbiased Characterization of Anopheles Mosquito Blood Meals by Targeted High-Throughput Sequencing.

Logue K, Keven JB, Cannon MV, Reimer L, Siba P, Walker ED, Zimmerman PA, Serre D.

PLoS Negl Trop Dis. 2016 Mar 10;10(3):e0004512. doi: 10.1371/journal.pntd.0004512. eCollection 2016 Mar.

21.

Population genomics of the filarial nematode parasite Wuchereria bancrofti from mosquitoes.

Small ST, Reimer LJ, Tisch DJ, King CL, Christensen BM, Siba PM, Kazura JW, Serre D, Zimmerman PA.

Mol Ecol. 2016 Apr;25(7):1465-77. doi: 10.1111/mec.13574. Epub 2016 Mar 15.

22.

Electrocatalytic O2 Reduction at a Bio-inspired Mononuclear Copper Phenolato Complex Immobilized on a Carbon Nanotube Electrode.

Gentil S, Serre D, Philouze C, Holzinger M, Thomas F, Le Goff A.

Angew Chem Int Ed Engl. 2016 Feb 12;55(7):2517-20. doi: 10.1002/anie.201509593. Epub 2016 Jan 8.

PMID:
26748615
23.

Development of a single nucleotide polymorphism barcode to genotype Plasmodium vivax infections.

Baniecki ML, Faust AL, Schaffner SF, Park DJ, Galinsky K, Daniels RF, Hamilton E, Ferreira MU, Karunaweera ND, Serre D, Zimmerman PA, Sá JM, Wellems TE, Musset L, Legrand E, Melnikov A, Neafsey DE, Volkman SK, Wirth DF, Sabeti PC.

PLoS Negl Trop Dis. 2015 Mar 17;9(3):e0003539. doi: 10.1371/journal.pntd.0003539. eCollection 2015 Mar.

24.

Comparative analysis of field-isolate and monkey-adapted Plasmodium vivax genomes.

Chan ER, Barnwell JW, Zimmerman PA, Serre D.

PLoS Negl Trop Dis. 2015 Mar 13;9(3):e0003566. doi: 10.1371/journal.pntd.0003566. eCollection 2015 Mar.

25.

Whole-genome sequencing reveals absence of recent gene flow and separate demographic histories for Anopheles punctulatus mosquitoes in Papua New Guinea.

Logue K, Small ST, Chan ER, Reimer L, Siba PM, Zimmerman PA, Serre D.

Mol Ecol. 2015 Mar;24(6):1263-74. doi: 10.1111/mec.13107. Epub 2015 Mar 6.

26.

Replication fork integrity and intra-S phase checkpoint suppress gene amplification.

Kondratova A, Watanabe T, Marotta M, Cannon M, Segall AM, Serre D, Tanaka H.

Nucleic Acids Res. 2015 Mar 11;43(5):2678-90. doi: 10.1093/nar/gkv084. Epub 2015 Feb 11.

27.

Diagnosis and management of deep neck infections in children: the experience of an Italian paediatric centre.

Raffaldi I, Le Serre D, Garazzino S, Scolfaro C, Bertaina C, Mignone F, Peradotto F, Tavormina P, Tovo PA.

J Infect Chemother. 2015 Feb;21(2):110-3. doi: 10.1016/j.jiac.2014.10.011. Epub 2014 Nov 20.

PMID:
25456894
28.

Vaccine effectiveness against severe laboratory-confirmed influenza in children: results of two consecutive seasons in Italy.

Menniti-Ippolito F, Da Cas R, Traversa G, Santuccio C, Felicetti P, Tartaglia L, Trotta F, Di Pietro P, Barabino P, Renna S, Riceputi L, Tovo PA, Gabiano C, Urbino A, Baroero L, Le Serre D, Virano S, Perilongo G, Daverio M, Gnoato E, Maretti M, Galeazzo B, Rubin G, Scanferla S, Da Dalt L, Stefani C, Zerbinati C, Chiappini E, Sollai S, De Martino M, Mannelli F, Becciani S, Giacalone M, Montano S, Remaschi G, Stival A, Furbetta M, Abate P, Leonardi I, Pirozzi N, Raucci U, Reale A, Rossi R, Russo C, Mancinelli L, Manuela O, Carlo C, Mores N, Romagnoli C, Chiaretti A, Compagnone A, Riccardi R, Delogu G, Sali M, Prete V, Tipo V, Dinardo M, Auricchio F, Polimeno T, Sodano G, Maccariello A, Rafaniello C, Fucà F, Di Rosa E, Altavilla D, Mecchio A, Arrigo T; Italian Multicentre Study Group for Drug and Vaccine Safety in Children.

Vaccine. 2014 Jul 31;32(35):4466-70. doi: 10.1016/j.vaccine.2014.06.048. Epub 2014 Jun 21.

29.

Single-cell genomics for dissection of complex malaria infections.

Nair S, Nkhoma SC, Serre D, Zimmerman PA, Gorena K, Daniel BJ, Nosten F, Anderson TJ, Cheeseman IH.

Genome Res. 2014 Jun;24(6):1028-38. doi: 10.1101/gr.168286.113. Epub 2014 May 8.

30.

Patterns of adiponectin expression in term pregnancy: impact of obesity.

Haghiac M, Basu S, Presley L, Serre D, Catalano PM, Hauguel-de Mouzon S.

J Clin Endocrinol Metab. 2014 Sep;99(9):3427-34. doi: 10.1210/jc.2013-4074. Epub 2014 May 5.

31.

African ancestry influences CCR5 -2459G>A genotype-associated virologic success of highly active antiretroviral therapy.

Cheruvu VK, Igo RP Jr, Jurevic RJ, Serre D, Zimmerman PA, Rodriguez B, Mehlotra RK.

J Acquir Immune Defic Syndr. 2014 May 1;66(1):102-7. doi: 10.1097/QAI.0000000000000129.

32.

Maternal nutrition induces pervasive gene expression changes but no detectable DNA methylation differences in the liver of adult offspring.

Cannon MV, Buchner DA, Hester J, Miller H, Sehayek E, Nadeau JH, Serre D.

PLoS One. 2014 Mar 3;9(3):e90335. doi: 10.1371/journal.pone.0090335. eCollection 2014.

33.

De novo assembly of a field isolate genome reveals novel Plasmodium vivax erythrocyte invasion genes.

Hester J, Chan ER, Menard D, Mercereau-Puijalon O, Barnwell J, Zimmerman PA, Serre D.

PLoS Negl Trop Dis. 2013 Dec 5;7(12):e2569. doi: 10.1371/journal.pntd.0002569. eCollection 2013.

34.

Analysing urban resilience through alternative stormwater management options: application of the conceptual Spatial Decision Support System model at the neighbourhood scale.

Balsells M, Barroca B, Amdal JR, Diab Y, Becue V, Serre D.

Water Sci Technol. 2013;68(11):2448-57. doi: 10.2166/wst.2013.527.

PMID:
24334895
35.

Whole genome sequencing of field isolates reveals a common duplication of the Duffy binding protein gene in Malagasy Plasmodium vivax strains.

Menard D, Chan ER, Benedet C, Ratsimbasoa A, Kim S, Chim P, Do C, Witkowski B, Durand R, Thellier M, Severini C, Legrand E, Musset L, Nour BY, Mercereau-Puijalon O, Serre D, Zimmerman PA.

PLoS Negl Trop Dis. 2013 Nov 21;7(11):e2489. doi: 10.1371/journal.pntd.0002489. eCollection 2013 Nov.

36.

Weighted gene coexpression network analysis of human left atrial tissue identifies gene modules associated with atrial fibrillation.

Tan N, Chung MK, Smith JD, Hsu J, Serre D, Newton DW, Castel L, Soltesz E, Pettersson G, Gillinov AM, Van Wagoner DR, Barnard J.

Circ Cardiovasc Genet. 2013 Aug;6(4):362-71. doi: 10.1161/CIRCGENETICS.113.000133. Epub 2013 Jul 17.

37.

Mitochondrial genome sequences reveal deep divergences among Anopheles punctulatus sibling species in Papua New Guinea.

Logue K, Chan ER, Phipps T, Small ST, Reimer L, Henry-Halldin C, Sattabongkot J, Siba PM, Zimmerman PA, Serre D.

Malar J. 2013 Feb 14;12:64. doi: 10.1186/1475-2875-12-64.

38.

Cathepsin B is a novel gender-dependent determinant of cholesterol absorption from the intestine.

Wong WP, Altemus JB, Hester JF, Chan ER, Côté JF, Serre D, Sehayek E.

J Lipid Res. 2013 Mar;54(3):816-22. doi: 10.1194/jlr.M034579. Epub 2012 Dec 17.

39.

Whole genome sequencing of field isolates provides robust characterization of genetic diversity in Plasmodium vivax.

Chan ER, Menard D, David PH, Ratsimbasoa A, Kim S, Chim P, Do C, Witkowski B, Mercereau-Puijalon O, Zimmerman PA, Serre D.

PLoS Negl Trop Dis. 2012;6(9):e1811. doi: 10.1371/journal.pntd.0001811. Epub 2012 Sep 6.

40.

Whole genome expression differences in human left and right atria ascertained by RNA sequencing.

Hsu J, Hanna P, Van Wagoner DR, Barnard J, Serre D, Chung MK, Smith JD.

Circ Cardiovasc Genet. 2012 Jun;5(3):327-35. doi: 10.1161/CIRCGENETICS.111.961631. Epub 2012 Apr 3.

41.

The complete mitochondrial genome sequence of the filarial nematode Wuchereria bancrofti from three geographic isolates provides evidence of complex demographic history.

Ramesh A, Small ST, Kloos ZA, Kazura JW, Nutman TB, Serre D, Zimmerman PA.

Mol Biochem Parasitol. 2012 May;183(1):32-41. doi: 10.1016/j.molbiopara.2012.01.004. Epub 2012 Feb 1.

42.

A novel method for determining microflora composition using dynamic phylogenetic analysis of 16S ribosomal RNA deep sequencing data.

Chan ER, Hester J, Kalady M, Xiao H, Li X, Serre D.

Genomics. 2011 Oct;98(4):253-9. doi: 10.1016/j.ygeno.2011.04.002. Epub 2011 Apr 15.

43.

Changes in whole blood gene expression in obese subjects with type 2 diabetes following bariatric surgery: a pilot study.

Berisha SZ, Serre D, Schauer P, Kashyap SR, Smith JD.

PLoS One. 2011 Mar 10;6(3):e16729. doi: 10.1371/journal.pone.0016729.

44.

Metabolic and genomic response to dietary isocaloric protein restriction in the rat.

Kalhan SC, Uppal SO, Moorman JL, Bennett C, Gruca LL, Parimi PS, Dasarathy S, Serre D, Hanson RW.

J Biol Chem. 2011 Feb 18;286(7):5266-77. doi: 10.1074/jbc.M110.185991. Epub 2010 Dec 8.

45.

MBD-isolated Genome Sequencing provides a high-throughput and comprehensive survey of DNA methylation in the human genome.

Serre D, Lee BH, Ting AH.

Nucleic Acids Res. 2010 Jan;38(2):391-9. doi: 10.1093/nar/gkp992. Epub 2009 Nov 11.

46.

Genetic variant near IRS1 is associated with type 2 diabetes, insulin resistance and hyperinsulinemia.

Rung J, Cauchi S, Albrechtsen A, Shen L, Rocheleau G, Cavalcanti-Proença C, Bacot F, Balkau B, Belisle A, Borch-Johnsen K, Charpentier G, Dina C, Durand E, Elliott P, Hadjadj S, Järvelin MR, Laitinen J, Lauritzen T, Marre M, Mazur A, Meyre D, Montpetit A, Pisinger C, Posner B, Poulsen P, Pouta A, Prentki M, Ribel-Madsen R, Ruokonen A, Sandbaek A, Serre D, Tichet J, Vaxillaire M, Wojtaszewski JF, Vaag A, Hansen T, Polychronakos C, Pedersen O, Froguel P, Sladek R.

Nat Genet. 2009 Oct;41(10):1110-5. doi: 10.1038/ng.443. Epub 2009 Sep 6. Erratum in: Nat Genet. 2009 Oct;41(10):1156.

PMID:
19734900
47.

Duplication of 7q34 is specific to juvenile pilocytic astrocytomas and a hallmark of cerebellar and optic pathway tumours.

Jacob K, Albrecht S, Sollier C, Faury D, Sader E, Montpetit A, Serre D, Hauser P, Garami M, Bognar L, Hanzely Z, Montes JL, Atkinson J, Farmer JP, Bouffet E, Hawkins C, Tabori U, Jabado N.

Br J Cancer. 2009 Aug 18;101(4):722-33. doi: 10.1038/sj.bjc.6605179. Epub 2009 Jul 14.

48.

Fresnel Interferometric Imager: ground-based prototype.

Serre D, Deba P, Koechlin L.

Appl Opt. 2009 May 20;48(15):2811-20.

PMID:
19458729
49.

Differential allelic expression in the human genome: a robust approach to identify genetic and epigenetic cis-acting mechanisms regulating gene expression.

Serre D, Gurd S, Ge B, Sladek R, Sinnett D, Harmsen E, Bibikova M, Chudin E, Barker DL, Dickinson T, Fan JB, Hudson TJ.

PLoS Genet. 2008 Feb 29;4(2):e1000006. doi: 10.1371/journal.pgen.1000006.

50.

Correction of population stratification in large multi-ethnic association studies.

Serre D, Montpetit A, Paré G, Engert JC, Yusuf S, Keavney B, Hudson TJ, Anand S.

PLoS One. 2008 Jan 2;3(1):e1382. doi: 10.1371/journal.pone.0001382.

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