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Items: 14

1.

Extreme genetic signatures of local adaptation during Lotus japonicus colonization of Japan.

Shah N, Wakabayashi T, Kawamura Y, Skovbjerg CK, Wang MZ, Mustamin Y, Isomura Y, Gupta V, Jin H, Mun T, Sandal N, Azuma F, Fukai E, Seren Ü, Kusakabe S, Kikuchi Y, Nitanda S, Kumaki T, Hashiguchi M, Tanaka H, Hayashi A, Sønderkær M, Nielsen KL, Schneeberger K, Vilhjalmsson B, Akashi R, Stougaard J, Sato S, Schierup MH, Andersen SU.

Nat Commun. 2020 Jan 14;11(1):253. doi: 10.1038/s41467-019-14213-y.

2.

AraPheno and the AraGWAS Catalog 2020: a major database update including RNA-Seq and knockout mutation data for Arabidopsis thaliana.

Togninalli M, Seren Ü, Freudenthal JA, Monroe JG, Meng D, Nordborg M, Weigel D, Borgwardt K, Korte A, Grimm DG.

Nucleic Acids Res. 2020 Jan 8;48(D1):D1063-D1068. doi: 10.1093/nar/gkz925.

PMID:
31642487
3.

GWA-Portal: Genome-Wide Association Studies Made Easy.

Seren Ü.

Methods Mol Biol. 2018;1761:303-319. doi: 10.1007/978-1-4939-7747-5_22.

PMID:
29525966
4.

Verification of Arabidopsis stock collections using SNPmatch, a tool for genotyping high-plexed samples.

Pisupati R, Reichardt I, Seren Ü, Korte P, Nizhynska V, Kerdaffrec E, Uzunova K, Rabanal FA, Filiault DL, Nordborg M.

Sci Data. 2017 Dec 19;4:170184. doi: 10.1038/sdata.2017.184.

5.

The AraGWAS Catalog: a curated and standardized Arabidopsis thaliana GWAS catalog.

Togninalli M, Seren Ü, Meng D, Fitz J, Nordborg M, Weigel D, Borgwardt K, Korte A, Grimm DG.

Nucleic Acids Res. 2018 Jan 4;46(D1):D1150-D1156. doi: 10.1093/nar/gkx954.

6.

Multiple alleles at a single locus control seed dormancy in Swedish Arabidopsis.

Kerdaffrec E, Filiault DL, Korte A, Sasaki E, Nizhynska V, Seren Ü, Nordborg M.

Elife. 2016 Dec 14;5. pii: e22502. doi: 10.7554/eLife.22502.

7.

AraPheno: a public database for Arabidopsis thaliana phenotypes.

Seren Ü, Grimm D, Fitz J, Weigel D, Nordborg M, Borgwardt K, Korte A.

Nucleic Acids Res. 2017 Jan 4;45(D1):D1054-D1059. doi: 10.1093/nar/gkw986. Epub 2016 Oct 24.

8.

Measures for interoperability of phenotypic data: minimum information requirements and formatting.

Ćwiek-Kupczyńska H, Altmann T, Arend D, Arnaud E, Chen D, Cornut G, Fiorani F, Frohmberg W, Junker A, Klukas C, Lange M, Mazurek C, Nafissi A, Neveu P, van Oeveren J, Pommier C, Poorter H, Rocca-Serra P, Sansone SA, Scholz U, van Schriek M, Seren Ü, Usadel B, Weise S, Kersey P, Krajewski P.

Plant Methods. 2016 Nov 9;12:44. eCollection 2016.

9.

Genome-wide association mapping in plants exemplified for root growth in Arabidopsis thaliana.

Slovak R, Göschl C, Seren Ü, Busch W.

Methods Mol Biol. 2015;1284:343-57. doi: 10.1007/978-1-4939-2444-8_17.

PMID:
25757781
10.

Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden.

Long Q, Rabanal FA, Meng D, Huber CD, Farlow A, Platzer A, Zhang Q, Vilhjálmsson BJ, Korte A, Nizhynska V, Voronin V, Korte P, Sedman L, Mandáková T, Lysak MA, Seren Ü, Hellmann I, Nordborg M.

Nat Genet. 2013 Aug;45(8):884-890. doi: 10.1038/ng.2678. Epub 2013 Jun 23.

11.

JAWAMix5: an out-of-core HDF5-based java implementation of whole-genome association studies using mixed models.

Long Q, Zhang Q, Vilhjalmsson BJ, Forai P, Seren Ü, Nordborg M.

Bioinformatics. 2013 May 1;29(9):1220-2. doi: 10.1093/bioinformatics/btt122. Epub 2013 Mar 11.

PMID:
23479353
12.

GWAPP: a web application for genome-wide association mapping in Arabidopsis.

Seren Ü, Vilhjálmsson BJ, Horton MW, Meng D, Forai P, Huang YS, Long Q, Segura V, Nordborg M.

Plant Cell. 2012 Dec;24(12):4793-805. doi: 10.1105/tpc.112.108068. Epub 2012 Dec 31.

13.

An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations.

Segura V, Vilhjálmsson BJ, Platt A, Korte A, Seren Ü, Long Q, Nordborg M.

Nat Genet. 2012 Jun 17;44(7):825-30. doi: 10.1038/ng.2314.

14.

Analysis and visualization of Arabidopsis thaliana GWAS using web 2.0 technologies.

Huang YS, Horton M, Vilhjálmsson BJ, Seren U, Meng D, Meyer C, Ali Amer M, Borevitz JO, Bergelson J, Nordborg M.

Database (Oxford). 2011 May 23;2011:bar014. doi: 10.1093/database/bar014. Print 2011.

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