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Items: 31

1.

Dynamics of breast-cancer relapse reveal late-recurring ER-positive genomic subgroups.

Rueda OM, Sammut SJ, Seoane JA, Chin SF, Caswell-Jin JL, Callari M, Batra R, Pereira B, Bruna A, Ali HR, Provenzano E, Liu B, Parisien M, Gillett C, McKinney S, Green AR, Murphy L, Purushotham A, Ellis IO, Pharoah PD, Rueda C, Aparicio S, Caldas C, Curtis C.

Nature. 2019 Mar;567(7748):399-404. doi: 10.1038/s41586-019-1007-8. Epub 2019 Mar 13.

PMID:
30867590
2.

Assessment of ERBB2/HER2 Status in HER2-Equivocal Breast Cancers by FISH and 2013/2014 ASCO-CAP Guidelines.

Press MF, Seoane JA, Curtis C, Quinaux E, Guzman R, Sauter G, Eiermann W, Mackey JR, Robert N, Pienkowski T, Crown J, Martin M, Valero V, Bee V, Ma Y, Villalobos I, Slamon DJ.

JAMA Oncol. 2019 Mar 1;5(3):366-375. doi: 10.1001/jamaoncol.2018.6012.

PMID:
30520947
3.

The chromatin accessibility landscape of primary human cancers.

Corces MR, Granja JM, Shams S, Louie BH, Seoane JA, Zhou W, Silva TC, Groeneveld C, Wong CK, Cho SW, Satpathy AT, Mumbach MR, Hoadley KA, Robertson AG, Sheffield NC, Felau I, Castro MAA, Berman BP, Staudt LM, Zenklusen JC, Laird PW, Curtis C; Cancer Genome Atlas Analysis Network, Greenleaf WJ, Chang HY.

Science. 2018 Oct 26;362(6413). pii: eaav1898. doi: 10.1126/science.aav1898.

4.

Comparative Molecular Analysis of Gastrointestinal Adenocarcinomas.

Liu Y, Sethi NS, Hinoue T, Schneider BG, Cherniack AD, Sanchez-Vega F, Seoane JA, Farshidfar F, Bowlby R, Islam M, Kim J, Chatila W, Akbani R, Kanchi RS, Rabkin CS, Willis JE, Wang KK, McCall SJ, Mishra L, Ojesina AI, Bullman S, Pedamallu CS, Lazar AJ, Sakai R; Cancer Genome Atlas Research Network, Thorsson V, Bass AJ, Laird PW.

Cancer Cell. 2018 Apr 9;33(4):721-735.e8. doi: 10.1016/j.ccell.2018.03.010. Epub 2018 Apr 2.

5.

Mapping the in vivo fitness landscape of lung adenocarcinoma tumor suppression in mice.

Rogers ZN, McFarland CD, Winters IP, Seoane JA, Brady JJ, Yoon S, Curtis C, Petrov DA, Winslow MM.

Nat Genet. 2018 Apr;50(4):483-486. doi: 10.1038/s41588-018-0083-2. Epub 2018 Apr 2.

6.

A p53 Super-tumor Suppressor Reveals a Tumor Suppressive p53-Ptpn14-Yap Axis in Pancreatic Cancer.

Mello SS, Valente LJ, Raj N, Seoane JA, Flowers BM, McClendon J, Bieging-Rolett KT, Lee J, Ivanochko D, Kozak MM, Chang DT, Longacre TA, Koong AC, Arrowsmith CH, Kim SK, Vogel H, Wood LD, Hruban RH, Curtis C, Attardi LD.

Cancer Cell. 2017 Oct 9;32(4):460-473.e6. doi: 10.1016/j.ccell.2017.09.007.

7.

Erratum to: Genome co-amplification upregulates a mitotic gene network activity that predicts outcome and response to mitotic protein inhibitors in breast cancer.

Hu Z, Mao JH, Curtis C, Huang G, Gu S, Heiser L, Lenburg ME, Korkola JE, Bayani N, Samarajiwa S, Seoane JA, Dane MA, Esch A, Feiler HS, Wang NJ, Hardwicke MA, Laquerre S, Jackson J, Wood KW, Weber B, Spellman PT, Aparicio S, Wooster R, Caldas C, Gray JW.

Breast Cancer Res. 2017 Feb 9;19(1):17. doi: 10.1186/s13058-017-0809-6. No abstract available.

8.

Genome co-amplification upregulates a mitotic gene network activity that predicts outcome and response to mitotic protein inhibitors in breast cancer.

Hu Z, Mao JH, Curtis C, Huang G, Gu S, Heiser L, Lenburg ME, Korkola JE, Bayani N, Samarajiwa S, Seoane JA, Dane MA, Esch A, Feiler HS, Wang NJ, Hardwicke MA, Laquerre S, Jackson J, W Wood K, Weber B, Spellman PT, Aparicio S, Wooster R, Caldas C, Gray JW.

Breast Cancer Res. 2016 Jul 1;18(1):70. doi: 10.1186/s13058-016-0728-y. Erratum in: Breast Cancer Res. 2017 Feb 9;19(1):17.

9.

Texture analysis in gel electrophoresis images using an integrative kernel-based approach.

Fernandez-Lozano C, Seoane JA, Gestal M, Gaunt TR, Dorado J, Pazos A, Campbell C.

Sci Rep. 2016 Jan 13;6:19256. doi: 10.1038/srep19256.

10.

RRegrs: an R package for computer-aided model selection with multiple regression models.

Tsiliki G, Munteanu CR, Seoane JA, Fernandez-Lozano C, Sarimveis H, Willighagen EL.

J Cheminform. 2015 Sep 15;7:46. doi: 10.1186/s13321-015-0094-2. eCollection 2015.

11.

Classification of signaling proteins based on molecular star graph descriptors using Machine Learning models.

Fernandez-Lozano C, Cuiñas RF, Seoane JA, Fernández-Blanco E, Dorado J, Munteanu CR.

J Theor Biol. 2015 Nov 7;384:50-8. doi: 10.1016/j.jtbi.2015.07.038. Epub 2015 Aug 20.

PMID:
26297890
12.

Canonical correlation analysis for gene-based pleiotropy discovery.

Seoane JA, Campbell C, Day IN, Casas JP, Gaunt TR.

PLoS Comput Biol. 2014 Oct 16;10(10):e1003876. doi: 10.1371/journal.pcbi.1003876. eCollection 2014 Oct.

13.

[Ethics, new ways of dying and organ donation].

Rodríguez-Arias D, Seoane JA, Ramil C, Molins N.

Med Intensiva. 2014 Apr;38(3):196-7. doi: 10.1016/j.medin.2013.09.006. Epub 2013 Nov 26. Spanish. No abstract available.

14.

Breast density classification to reduce false positives in CADe systems.

Vállez N, Bueno G, Déniz O, Dorado J, Seoane JA, Pazos A, Pastor C.

Comput Methods Programs Biomed. 2014 Feb;113(2):569-84. doi: 10.1016/j.cmpb.2013.10.004. Epub 2013 Oct 28.

PMID:
24286729
15.

A pathway-based data integration framework for prediction of disease progression.

Seoane JA, Day IN, Gaunt TR, Campbell C.

Bioinformatics. 2014 Mar 15;30(6):838-45. doi: 10.1093/bioinformatics/btt610. Epub 2013 Oct 24.

16.

Anonymizing patient genomic data for public sharing association studies.

Fernandez-Lozano C, Lopez-Campos G, Seoane JA, Lopez-Alonso V, Dorado J, Martín-Sanchez F, Pazos A.

Stud Health Technol Inform. 2013;192:979.

PMID:
23920753
17.

New approaches in data integration for systems chemical biology.

Seoane JA, López-Campos G, Dorado J, Martin-Sanchez F.

Curr Top Med Chem. 2013;13(5):591-601. Review.

PMID:
23548022
18.

Biomedical data integration in computational drug design and bioinformatics.

Seoane JA, Aguiar-Pulido V, Munteanu CR, Rivero D, Rabunal JR, Dorado J, Pazos A.

Curr Comput Aided Drug Des. 2013 Mar;9(1):108-17. Review.

PMID:
23294434
19.

Exploring patterns of epigenetic information with data mining techniques.

Aguiar-Pulido V, Seoane JA, Gestal M, Dorado J.

Curr Pharm Des. 2013;19(4):779-89. Review.

PMID:
23016855
20.
21.

Naïve Bayes QSDR classification based on spiral-graph Shannon entropies for protein biomarkers in human colon cancer.

Aguiar-Pulido V, Munteanu CR, Seoane JA, Fernández-Blanco E, Pérez-Montoto LG, González-Díaz H, Dorado J.

Mol Biosyst. 2012 Jun;8(6):1716-22. doi: 10.1039/c2mb25039j. Epub 2012 Mar 30.

PMID:
22466084
22.

[The culture of confidentiality in Northern Spain hospitals].

Iraburu M, Seoane JA, Gaminde I.

Med Clin (Barc). 2012 Jun 16;139(2):76-81. doi: 10.1016/j.medcli.2011.10.008. Epub 2011 Dec 3. Spanish. No abstract available.

PMID:
22137998
23.

[Conscientious objection in the clinical setting. A proposal for its appropriate use (II)].

Couceiro A, Seoane JA, Hernando P.

Rev Calid Asist. 2011 Sep-Oct;26(5):320-4. doi: 10.1016/j.cali.2011.02.007. Epub 2011 May 2. Spanish.

PMID:
21543248
24.

[Conscientious objection in the clinical setting. A proposal for its appropriate use].

Couceiro A, Seoane JA, Hernando P.

Rev Calid Asist. 2011 May-Jun;26(3):188-93. doi: 10.1016/j.cali.2011.02.008. Epub 2011 May 2. Spanish.

PMID:
21543247
25.

An artificial neural network improves the non-invasive diagnosis of significant fibrosis in HIV/HCV coinfected patients.

Resino S, Seoane JA, Bellón JM, Dorado J, Martin-Sanchez F, Alvarez E, Cosín J, López JC, Lopéz G, Miralles P, Berenguer J.

J Infect. 2011 Jan;62(1):77-86. doi: 10.1016/j.jinf.2010.11.003. Epub 2010 Nov 10.

PMID:
21073895
26.

Retrieval and management of medical information from heterogeneous sources, for its integration in a medical record visualisation tool.

Cabarcos A, Sanchez T, Seoane JA, Aguiar-Pulido V, Freire A, Dorado J, Pazos A.

Int J Electron Healthc. 2010;5(4):371-85.

PMID:
21041176
27.

A Block-matching based technique for the analysis of 2D gel images.

Freire A, Seoane JA, Rodríguez A, Ruiz-Romero C, López-Campos G, Dorado J.

Stud Health Technol Inform. 2010;160(Pt 2):1282-6.

PMID:
20841891
28.

Machine learning techniques for single nucleotide polymorphism--disease classification models in schizophrenia.

Aguiar-Pulido V, Seoane JA, Rabuñal JR, Dorado J, Pazos A, Munteanu CR.

Molecules. 2010 Jul 12;15(7):4875-89. doi: 10.3390/molecules15074875.

29.

Drug discovery and design for complex diseases through QSAR computational methods.

Munteanu CR, Fernández-Blanco E, Seoane JA, Izquierdo-Novo P, Rodríguez-Fernández JA, Prieto-González JM, Rabuñal JR, Pazos A.

Curr Pharm Des. 2010;16(24):2640-55. Review.

PMID:
20642425
30.

[Consent, biobanks and biomedical research law].

Seoane JA, Casado da Rocha A.

Rev Derecho Genoma Hum. 2008 Jul-Dec;(29):131-48. Spanish.

PMID:
19334409
31.

Alternative consent models for biobanks: the new Spanish law on biomedical research.

da Rocha AC, Seoane JA.

Bioethics. 2008 Sep;22(8):440-7. doi: 10.1111/j.1467-8519.2008.00673.x. Epub 2008 Jul 17.

PMID:
18644013

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