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Items: 1 to 50 of 123

1.

Cellular Immune Response Involving Multinucleated Giant Hemocytes with Two-Step Genome Amplification in the Drosophilid Zaprionus indianus.

Cinege G, Lerner Z, Magyar LB, Soós B, Tóth R, Kristó I, Vilmos P, Juhász G, Kovács AL, Hegedűs Z, Sensen CW, Kurucz É, Andó I.

J Innate Immun. 2019 Sep 25:1-16. doi: 10.1159/000502646. [Epub ahead of print]

2.

Enterobacteriaceae dominate the core microbiome and contribute to the resistome of arugula (Eruca sativa Mill.).

Cernava T, Erlacher A, Soh J, Sensen CW, Grube M, Berg G.

Microbiome. 2019 Jan 29;7(1):13. doi: 10.1186/s40168-019-0624-7.

3.

Plasticity of a holobiont: desiccation induces fasting-like metabolism within the lichen microbiota.

Cernava T, Aschenbrenner IA, Soh J, Sensen CW, Grube M, Berg G.

ISME J. 2019 Feb;13(2):547-556. doi: 10.1038/s41396-018-0286-7. Epub 2018 Oct 11.

4.

Instant Feedback Rapid Prototyping for GPU-Accelerated Computation, Manipulation, and Visualization of Multidimensional Data.

Malek M, Sensen CW.

Int J Biomed Imaging. 2018 Jun 3;2018:2046269. doi: 10.1155/2018/2046269. eCollection 2018.

5.

Benzene and Naphthalene Degrading Bacterial Communities in an Oil Sands Tailings Pond.

Rochman FF, Sheremet A, Tamas I, Saidi-Mehrabad A, Kim JJ, Dong X, Sensen CW, Gieg LM, Dunfield PF.

Front Microbiol. 2017 Sep 28;8:1845. doi: 10.3389/fmicb.2017.01845. eCollection 2017.

6.

Editorial Special Issue on the Occasion of Prof. Dr. Alf Pühler's 75th birthday.

Alves PM, Becker A, Blöcker H, Chan RL, Chen GG, Fussenegger M, Kondo A, Kourist R, Schwab H, Seo JH, Sensen CW, Sensen M, Scrienc F.

J Biotechnol. 2017 Sep 10;257:1. doi: 10.1016/j.jbiotec.2017.07.013. No abstract available.

PMID:
28818445
7.

Four distinct types of E.C. 1.2.1.30 enzymes can catalyze the reduction of carboxylic acids to aldehydes.

Stolterfoht H, Schwendenwein D, Sensen CW, Rudroff F, Winkler M.

J Biotechnol. 2017 Sep 10;257:222-232. doi: 10.1016/j.jbiotec.2017.02.014. Epub 2017 Feb 20.

PMID:
28223183
8.

Addressing proteolytic efficiency in enzymatic degradation therapy for celiac disease.

Rey M, Yang M, Lee L, Zhang Y, Sheff JG, Sensen CW, Mrazek H, Halada P, Man P, McCarville JL, Verdu EF, Schriemer DC.

Sci Rep. 2016 Aug 2;6:30980. doi: 10.1038/srep30980.

9.

Carnivorous Nutrition in Pitcher Plants (Nepenthes spp.) via an Unusual Complement of Endogenous Enzymes.

Lee L, Zhang Y, Ozar B, Sensen CW, Schriemer DC.

J Proteome Res. 2016 Sep 2;15(9):3108-17. doi: 10.1021/acs.jproteome.6b00224. Epub 2016 Aug 1.

PMID:
27436081
10.

Special Issue on acib, dedicated to the occasion of Prof. Dr. Helmut Schwab's 65th birthday.

Nidetzky B, Sensen CW.

J Biotechnol. 2016 Oct 10;235:1-2. doi: 10.1016/j.jbiotec.2016.07.011. Epub 2016 Jul 15. No abstract available.

PMID:
27426007
11.

Oil sands tailings ponds harbour a small core prokaryotic microbiome and diverse accessory communities.

Wilson SL, Li C, Ramos-Padrón E, Nesbø C, Soh J, Sensen CW, Voordouw G, Foght J, Gieg LM.

J Biotechnol. 2016 Oct 10;235:187-96. doi: 10.1016/j.jbiotec.2016.06.030. Epub 2016 Jul 1.

PMID:
27378620
12.

Whole genome sequence-based serogrouping of Listeria monocytogenes isolates.

Hyden P, Pietzka A, Lennkh A, Murer A, Springer B, Blaschitz M, Indra A, Huhulescu S, Allerberger F, Ruppitsch W, Sensen CW.

J Biotechnol. 2016 Oct 10;235:181-6. doi: 10.1016/j.jbiotec.2016.06.005. Epub 2016 Jun 8.

13.

Structure of a Berberine Bridge Enzyme-Like Enzyme with an Active Site Specific to the Plant Family Brassicaceae.

Daniel B, Wallner S, Steiner B, Oberdorfer G, Kumar P, van der Graaff E, Roitsch T, Sensen CW, Gruber K, Macheroux P.

PLoS One. 2016 Jun 8;11(6):e0156892. doi: 10.1371/journal.pone.0156892. eCollection 2016.

14.

Characterization of two novel alcohol short-chain dehydrogenases/reductases from Ralstonia eutropha H16 capable of stereoselective conversion of bulky substrates.

Magomedova Z, Grecu A, Sensen CW, Schwab H, Heidinger P.

J Biotechnol. 2016 Mar 10;221:78-90. doi: 10.1016/j.jbiotec.2016.01.030. Epub 2016 Jan 23.

PMID:
26812656
15.

Draft Genome Sequence of a 94-Year-Old Listeria monocytogenes Isolate, SLCC208.

Hyden P, Pietzka A, Allerberger F, Springer B, Sensen C, Ruppitsch W.

Genome Announc. 2016 Jan 21;4(1). pii: e01572-15. doi: 10.1128/genomeA.01572-15.

16.

Transcriptome analysis of 20 taxonomically related benzylisoquinoline alkaloid-producing plants.

Hagel JM, Morris JS, Lee EJ, Desgagné-Penix I, Bross CD, Chang L, Chen X, Farrow SC, Zhang Y, Soh J, Sensen CW, Facchini PJ.

BMC Plant Biol. 2015 Sep 18;15:227. doi: 10.1186/s12870-015-0596-0.

17.

Roles of Thermophiles and Fungi in Bitumen Degradation in Mostly Cold Oil Sands Outcrops.

Wong ML, An D, Caffrey SM, Soh J, Dong X, Sensen CW, Oldenburg TB, Larter SR, Voordouw G.

Appl Environ Microbiol. 2015 Oct;81(19):6825-38. doi: 10.1128/AEM.02221-15. Epub 2015 Jul 24.

18.

Oxidation of Monolignols by Members of the Berberine Bridge Enzyme Family Suggests a Role in Plant Cell Wall Metabolism.

Daniel B, Pavkov-Keller T, Steiner B, Dordic A, Gutmann A, Nidetzky B, Sensen CW, van der Graaff E, Wallner S, Gruber K, Macheroux P.

J Biol Chem. 2015 Jul 24;290(30):18770-81. doi: 10.1074/jbc.M115.659631. Epub 2015 Jun 2.

19.

Transcriptome profiling of khat (Catha edulis) and Ephedra sinica reveals gene candidates potentially involved in amphetamine-type alkaloid biosynthesis.

Groves RA, Hagel JM, Zhang Y, Kilpatrick K, Levy A, Marsolais F, Lewinsohn E, Sensen CW, Facchini PJ.

PLoS One. 2015 Mar 25;10(3):e0119701. doi: 10.1371/journal.pone.0119701. eCollection 2015.

20.

LincRNA-p21 acts as a mediator of ING1b-induced apoptosis.

Tran UM, Rajarajacholan U, Soh J, Kim TS, Thalappilly S, Sensen CW, Riabowol K.

Cell Death Dis. 2015 Mar 5;6:e1668. doi: 10.1038/cddis.2015.15.

21.

Comparative analysis of metagenomes from three methanogenic hydrocarbon-degrading enrichment cultures with 41 environmental samples.

Tan B, Fowler SJ, Abu Laban N, Dong X, Sensen CW, Foght J, Gieg LM.

ISME J. 2015 Sep;9(9):2028-45. doi: 10.1038/ismej.2015.22. Epub 2015 Mar 3.

22.

Rhizobiales as functional and endosymbiontic members in the lichen symbiosis of Lobaria pulmonaria L.

Erlacher A, Cernava T, Cardinale M, Soh J, Sensen CW, Grube M, Berg G.

Front Microbiol. 2015 Feb 10;6:53. doi: 10.3389/fmicb.2015.00053. eCollection 2015.

23.

BRENDA in 2015: exciting developments in its 25th year of existence.

Chang A, Schomburg I, Placzek S, Jeske L, Ulbrich M, Xiao M, Sensen CW, Schomburg D.

Nucleic Acids Res. 2015 Jan;43(Database issue):D439-46. doi: 10.1093/nar/gku1068. Epub 2014 Nov 5.

24.

Exploring functional contexts of symbiotic sustain within lichen-associated bacteria by comparative omics.

Grube M, Cernava T, Soh J, Fuchs S, Aschenbrenner I, Lassek C, Wegner U, Becher D, Riedel K, Sensen CW, Berg G.

ISME J. 2015 Feb;9(2):412-24. doi: 10.1038/ismej.2014.138. Epub 2014 Jul 29.

25.

SnowyOwl: accurate prediction of fungal genes by using RNA-Seq and homology information to select among ab initio models.

Reid I, O'Toole N, Zabaneh O, Nourzadeh R, Dahdouli M, Abdellateef M, Gordon PM, Soh J, Butler G, Sensen CW, Tsang A.

BMC Bioinformatics. 2014 Jul 1;15:229. doi: 10.1186/1471-2105-15-229.

26.

Diversity of rumen bacteria in canadian cervids.

Gruninger RJ, Sensen CW, McAllister TA, Forster RJ.

PLoS One. 2014 Feb 27;9(2):e89682. doi: 10.1371/journal.pone.0089682. eCollection 2014.

27.

Genome research and bioinformatics with relevance to biotechnology.

Sensen CW.

J Biotechnol. 2014 Jan 20;170:iv. doi: 10.1016/S0168-1656(13)00565-8. No abstract available.

PMID:
24388465
28.

Microbial community and potential functional gene diversity involved in anaerobic hydrocarbon degradation and methanogenesis in an oil sands tailings pond.

An D, Brown D, Chatterjee I, Dong X, Ramos-Padron E, Wilson S, Bordenave S, Caffrey SM, Gieg LM, Sensen CW, Voordouw G.

Genome. 2013 Oct;56(10):612-8. doi: 10.1139/gen-2013-0083. Epub 2013 Jul 29.

29.

Metagenomic analysis of an anaerobic alkane-degrading microbial culture: potential hydrocarbon-activating pathways and inferred roles of community members.

Tan B, Dong X, Sensen CW, Foght J.

Genome. 2013 Oct;56(10):599-611. doi: 10.1139/gen-2013-0069. Epub 2013 May 30.

30.

Metagenomics of hydrocarbon resource environments indicates aerobic taxa and genes to be unexpectedly common.

An D, Caffrey SM, Soh J, Agrawal A, Brown D, Budwill K, Dong X, Dunfield PF, Foght J, Gieg LM, Hallam SJ, Hanson NW, He Z, Jack TR, Klassen J, Konwar KM, Kuatsjah E, Li C, Larter S, Leopatra V, Nesbø CL, Oldenburg T, Pagé AP, Ramos-Padron E, Rochman FF, Saidi-Mehrabad A, Sensen CW, Sipahimalani P, Song YC, Wilson S, Wolbring G, Wong ML, Voordouw G.

Environ Sci Technol. 2013 Sep 17;47(18):10708-17. doi: 10.1021/es4020184. Epub 2013 Aug 26.

31.

Phoenix 2: a locally installable large-scale 16S rRNA gene sequence analysis pipeline with Web interface.

Soh J, Dong X, Caffrey SM, Voordouw G, Sensen CW.

J Biotechnol. 2013 Sep 20;167(4):393-403. doi: 10.1016/j.jbiotec.2013.07.004. Epub 2013 Jul 16.

32.

Genomic compartmentalization of gene families encoding core components of metazoan signaling systems.

Wong H, Soh J, Gordon PM, Yu T, Sensen CW, Parr E, Johnston RN.

Genome. 2013 Apr;56(4):215-25. doi: 10.1139/gen-2013-0021. Epub 2013 Apr 1.

PMID:
23706074
33.

Transcriptome analysis of Thapsia laciniata Rouy provides insights into terpenoid biosynthesis and diversity in Apiaceae.

Drew DP, Dueholm B, Weitzel C, Zhang Y, Sensen CW, Simonsen HT.

Int J Mol Sci. 2013 Apr 25;14(5):9080-98. doi: 10.3390/ijms14059080.

34.

Transcriptome analysis based on next-generation sequencing of non-model plants producing specialized metabolites of biotechnological interest.

Xiao M, Zhang Y, Chen X, Lee EJ, Barber CJ, Chakrabarty R, Desgagné-Penix I, Haslam TM, Kim YB, Liu E, MacNevin G, Masada-Atsumi S, Reed DW, Stout JM, Zerbe P, Zhang Y, Bohlmann J, Covello PS, De Luca V, Page JE, Ro DK, Martin VJ, Facchini PJ, Sensen CW.

J Biotechnol. 2013 Jul 10;166(3):122-34. doi: 10.1016/j.jbiotec.2013.04.004. Epub 2013 Apr 16.

35.

Methanotrophic bacteria in oilsands tailings ponds of northern Alberta.

Saidi-Mehrabad A, He Z, Tamas I, Sharp CE, Brady AL, Rochman FF, Bodrossy L, Abell GC, Penner T, Dong X, Sensen CW, Dunfield PF.

ISME J. 2013 May;7(5):908-21. doi: 10.1038/ismej.2012.163. Epub 2012 Dec 20.

36.

Molecular and phylogenetic approaches for assessing sources of Cryptosporidium contamination in water.

Ruecker NJ, Matsune JC, Wilkes G, Lapen DR, Topp E, Edge TA, Sensen CW, Xiao L, Neumann NF.

Water Res. 2012 Oct 15;46(16):5135-50. doi: 10.1016/j.watres.2012.06.045. Epub 2012 Jul 10.

PMID:
22841595
37.

Complete genome sequence of the fruiting myxobacterium Corallococcus coralloides DSM 2259.

Huntley S, Zhang Y, Treuner-Lange A, Kneip S, Sensen CW, Søgaard-Andersen L.

J Bacteriol. 2012 Jun;194(11):3012-3. doi: 10.1128/JB.00397-12.

38.

Unconventional microarray design reveals the response to obesity is largely tissue specific: analysis of common and divergent responses to diet-induced obesity in insulin-sensitive tissues.

Lee RK, Hittel DS, Nyamandi VZ, Kang L, Soh J, Sensen CW, Shearer J.

Appl Physiol Nutr Metab. 2012 Apr;37(2):257-68. doi: 10.1139/h11-159. Epub 2012 Mar 27.

PMID:
22452611
39.

The Bluejay genome browser.

Soh J, Gordon PM, Sensen CW.

Curr Protoc Bioinformatics. 2012 Mar;Chapter 10:Unit10.9. doi: 10.1002/0471250953.bi1009s37.

PMID:
22389011
40.

Methanogenic biodegradation of two-ringed polycyclic aromatic hydrocarbons.

Berdugo-Clavijo C, Dong X, Soh J, Sensen CW, Gieg LM.

FEMS Microbiol Ecol. 2012 Jul;81(1):124-33. doi: 10.1111/j.1574-6941.2012.01328.x. Epub 2012 Mar 8.

41.

Synthetic biosystems for the production of high-value plant metabolites.

Facchini PJ, Bohlmann J, Covello PS, De Luca V, Mahadevan R, Page JE, Ro DK, Sensen CW, Storms R, Martin VJ.

Trends Biotechnol. 2012 Mar;30(3):127-31. doi: 10.1016/j.tibtech.2011.10.001. Epub 2011 Dec 29.

PMID:
22209518
42.

Methanogenic toluene metabolism: community structure and intermediates.

Fowler SJ, Dong X, Sensen CW, Suflita JM, Gieg LM.

Environ Microbiol. 2012 Mar;14(3):754-64. doi: 10.1111/j.1462-2920.2011.02631.x. Epub 2011 Nov 1.

PMID:
22040260
43.

Compositions of microbial communities associated with oil and water in a mesothermic oil field.

Kryachko Y, Dong X, Sensen CW, Voordouw G.

Antonie Van Leeuwenhoek. 2012 Mar;101(3):493-506. doi: 10.1007/s10482-011-9658-y. Epub 2011 Oct 29.

PMID:
22038128
44.

Effect of sodium bisulfite injection on the microbial community composition in a brackish-water-transporting pipeline.

Park HS, Chatterjee I, Dong X, Wang SH, Sensen CW, Caffrey SM, Jack TR, Boivin J, Voordouw G.

Appl Environ Microbiol. 2011 Oct;77(19):6908-17. doi: 10.1128/AEM.05891-11. Epub 2011 Aug 19.

45.

Integrative visualization of temporally varying medical image patterns.

Soh J, Xiao M, Do T, Meruvia-Pastor O, Sensen CW.

J Integr Bioinform. 2011 Jul 21;8(2):161. doi: 10.2390/biecoll-jib-2011-161.

PMID:
21778531
46.

Estimating cell count and distribution in labeled histological samples using incremental cell search.

Meruvia-Pastor OE, Soh J, Schmidt EJ, Boughner JC, Xiao M, Jamniczky HA, Hallgrímsson B, Sensen CW.

Int J Biomed Imaging. 2011;2011:874702. doi: 10.1155/2011/874702. Epub 2011 May 24.

47.

Microbial community succession in a bioreactor modeling a souring low-temperature oil reservoir subjected to nitrate injection.

Callbeck CM, Dong X, Chatterjee I, Agrawal A, Caffrey SM, Sensen CW, Voordouw G.

Appl Microbiol Biotechnol. 2011 Aug;91(3):799-810. doi: 10.1007/s00253-011-3287-2. Epub 2011 May 3.

PMID:
21538114
48.

Generation of connectivity-preserving surface models of multiple sclerosis lesions.

Meruvia-Pastor O, Xiao M, Soh J, Sensen CW.

Stud Health Technol Inform. 2011;163:359-65.

PMID:
21335819
49.

Metabolomic response to exercise training in lean and diet-induced obese mice.

Duggan GE, Hittel DS, Sensen CW, Weljie AM, Vogel HJ, Shearer J.

J Appl Physiol (1985). 2011 May;110(5):1311-8. doi: 10.1152/japplphysiol.00701.2010. Epub 2011 Jan 26.

50.

Carbon and sulfur cycling by microbial communities in a gypsum-treated oil sands tailings pond.

Ramos-Padrón E, Bordenave S, Lin S, Bhaskar IM, Dong X, Sensen CW, Fournier J, Voordouw G, Gieg LM.

Environ Sci Technol. 2011 Jan 15;45(2):439-46. doi: 10.1021/es1028487. Epub 2010 Dec 3.

PMID:
21128661

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