Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 291

1.

How Does a Microbial Rodhopsin RxR Realize Its Exceptionally High Thermostability with the Proton-Pumping Function Being Retained?

Hayashi T, Yasuda S, Suzuki K, Akiyama T, Kanehara K, Kojima K, Tanabe M, Kato R, Senda T, Sudo Y, Murata T, Kinoshita M.

J Phys Chem B. 2020 Jan 19. doi: 10.1021/acs.jpcb.9b10700. [Epub ahead of print]

PMID:
31955569
2.

Crystal structures of fukutin-related protein (FKRP), a ribitol-phosphate transferase related to muscular dystrophy.

Kuwabara N, Imae R, Manya H, Tanaka T, Mizuno M, Tsumoto H, Kanagawa M, Kobayashi K, Toda T, Senda T, Endo T, Kato R.

Nat Commun. 2020 Jan 16;11(1):303. doi: 10.1038/s41467-019-14220-z.

3.

Correction to: Structural basis for a highly (S)-enantioselective reductase towards aliphatic ketones with only one carbon difference between side chain.

Koesoema AA, Sugiyama Y, Xu Z, Standley DM, Senda M, Senda T, Matsuda T.

Appl Microbiol Biotechnol. 2019 Dec;103(23-24):9555. doi: 10.1007/s00253-019-10138-0.

PMID:
31728584
4.

Reversible control of enantioselectivity by the length of ketone substituent in biocatalytic reduction.

Koesoema AA, Sugiyama Y, Sriwong KT, Xu Z, Verina S, Standley DM, Senda M, Senda T, Matsuda T.

Appl Microbiol Biotechnol. 2019 Dec;103(23-24):9529-9541. doi: 10.1007/s00253-019-10206-5. Epub 2019 Nov 13.

PMID:
31720775
5.

Single-cell transcriptomics of human T cells reveals tissue and activation signatures in health and disease.

Szabo PA, Levitin HM, Miron M, Snyder ME, Senda T, Yuan J, Cheng YL, Bush EC, Dogra P, Thapa P, Farber DL, Sims PA.

Nat Commun. 2019 Oct 17;10(1):4706. doi: 10.1038/s41467-019-12464-3.

6.

Anti-Tumor Potential of IMP Dehydrogenase Inhibitors: A Century-Long Story.

Naffouje R, Grover P, Yu H, Sendilnathan A, Wolfe K, Majd N, Smith EP, Takeuchi K, Senda T, Kofuji S, Sasaki AT.

Cancers (Basel). 2019 Sep 11;11(9). pii: E1346. doi: 10.3390/cancers11091346. Review.

7.

Extracellular Vesicles Containing MicroRNA-92a-3p Facilitate Partial Endothelial-Mesenchymal Transition and Angiogenesis in Endothelial Cells.

Yamada NO, Heishima K, Akao Y, Senda T.

Int J Mol Sci. 2019 Sep 7;20(18). pii: E4406. doi: 10.3390/ijms20184406.

8.

Structural basis for a highly (S)-enantioselective reductase towards aliphatic ketones with only one carbon difference between side chain.

Koesoema AA, Sugiyama Y, Xu Z, Standley DM, Senda M, Senda T, Matsuda T.

Appl Microbiol Biotechnol. 2019 Dec;103(23-24):9543-9553. doi: 10.1007/s00253-019-10093-w. Epub 2019 Nov 15. Erratum in: Appl Microbiol Biotechnol. 2019 Nov 15;:.

PMID:
31482280
9.

Serial Femtosecond X-Ray Diffraction of HIV-1 Gag MA-IP6 Microcrystals at Ambient Temperature.

I Ciftci H, G Sierra R, Yoon CH, Su Z, Tateishi H, Koga R, Kotaro K, Yumoto F, Senda T, Liang M, Wakatsuki S, Otsuka M, Fujita M, DeMirci H.

Int J Mol Sci. 2019 Apr 3;20(7). pii: E1675. doi: 10.3390/ijms20071675.

10.

Generation and persistence of human tissue-resident memory T cells in lung transplantation.

Snyder ME, Finlayson MO, Connors TJ, Dogra P, Senda T, Bush E, Carpenter D, Marboe C, Benvenuto L, Shah L, Robbins H, Hook JL, Sykes M, D'Ovidio F, Bacchetta M, Sonett JR, Lederer DJ, Arcasoy S, Sims PA, Farber DL.

Sci Immunol. 2019 Mar 8;4(33). pii: eaav5581. doi: 10.1126/sciimmunol.aav5581.

11.

Correlation between pre-operative and final histological diagnosis on endometrial cancer.

Shiozaki T, Miwa M, Sakuma T, Suzuki K, Kogiku A, Yamamoto K, Senda T, Yano H, Kitai M, Matsuoka K, Sudo T, Nagao S, Yamaguchi S.

Int J Gynecol Cancer. 2019 Jun;29(5):886-889. doi: 10.1136/ijgc-2018-000041. Epub 2019 Jan 4.

PMID:
30826751
12.

Microanatomical dissection of human intestinal T-cell immunity reveals site-specific changes in gut-associated lymphoid tissues over life.

Senda T, Dogra P, Granot T, Furuhashi K, Snyder ME, Carpenter DJ, Szabo PA, Thapa P, Miron M, Farber DL.

Mucosal Immunol. 2019 Mar;12(2):378-389. doi: 10.1038/s41385-018-0110-8. Epub 2018 Dec 6.

13.

Human Intestinal Allografts Contain Functional Hematopoietic Stem and Progenitor Cells that Are Maintained by a Circulating Pool.

Fu J, Zuber J, Martinez M, Shonts B, Obradovic A, Wang H, Lau SP, Xia A, Waffarn EE, Frangaj K, Savage TM, Simpson MT, Yang S, Guo XV, Miron M, Senda T, Rogers K, Rahman A, Ho SH, Shen Y, Griesemer A, Farber DL, Kato T, Sykes M.

Cell Stem Cell. 2019 Feb 7;24(2):227-239.e8. doi: 10.1016/j.stem.2018.11.007. Epub 2018 Nov 29.

PMID:
30503142
14.

Functional heterogeneity of human tissue-resident memory T cells based on dye efflux capacities.

Kumar BV, Kratchmarov R, Miron M, Carpenter DJ, Senda T, Lerner H, Friedman A, Reiner SL, Farber DL.

JCI Insight. 2018 Nov 15;3(22). pii: 123568. doi: 10.1172/jci.insight.123568.

15.

Human Lymph Nodes Maintain TCF-1hi Memory T Cells with High Functional Potential and Clonal Diversity throughout Life.

Miron M, Kumar BV, Meng W, Granot T, Carpenter DJ, Senda T, Chen D, Rosenfeld AM, Zhang B, Lerner H, Friedman AL, Hershberg U, Shen Y, Rahman A, Luning Prak ET, Farber DL.

J Immunol. 2018 Oct 1;201(7):2132-2140. doi: 10.4049/jimmunol.1800716. Epub 2018 Aug 15.

16.

Functional activity of the H3.3 histone chaperone complex HIRA requires trimerization of the HIRA subunit.

Ray-Gallet D, Ricketts MD, Sato Y, Gupta K, Boyarchuk E, Senda T, Marmorstein R, Almouzni G.

Nat Commun. 2018 Aug 6;9(1):3103. doi: 10.1038/s41467-018-05581-y.

17.

Structural and Computational Bases for Dramatic Skeletal Rearrangement in Anditomin Biosynthesis.

Nakashima Y, Mitsuhashi T, Matsuda Y, Senda M, Sato H, Yamazaki M, Uchiyama M, Senda T, Abe I.

J Am Chem Soc. 2018 Aug 1;140(30):9743-9750. doi: 10.1021/jacs.8b06084. Epub 2018 Jul 18.

PMID:
29972643
18.

Validation and application of a novel APC antibody in western blotting, immunoprecipitation, and immunohistochemistry.

Yamada NO, Wenduerma, Matsuda S, Senda T.

Med Mol Morphol. 2018 Dec;51(4):227-236. doi: 10.1007/s00795-018-0196-9. Epub 2018 Jun 19.

PMID:
29923125
19.

BRI2 as an anti-Alzheimer gene.

Matsuda S, Senda T.

Med Mol Morphol. 2019 Mar;52(1):1-7. doi: 10.1007/s00795-018-0191-1. Epub 2018 Apr 23. Review.

PMID:
29687167
20.

Crystal structure of the nitrosuccinate lyase CreD in complex with fumarate provides insights into the catalytic mechanism for nitrous acid elimination.

Katsuyama Y, Sato Y, Sugai Y, Higashiyama Y, Senda M, Senda T, Ohnishi Y.

FEBS J. 2018 Apr;285(8):1540-1555. doi: 10.1111/febs.14429. Epub 2018 Mar 24.

21.

Crystal structure of the DNA-binding domain of the LysR-type transcriptional regulator CbnR in complex with a DNA fragment of the recognition-binding site in the promoter region.

Koentjoro MP, Adachi N, Senda M, Ogawa N, Senda T.

FEBS J. 2018 Mar;285(5):977-989. doi: 10.1111/febs.14380. Epub 2018 Jan 28.

22.

Structure function and engineering of multifunctional non-heme iron dependent oxygenases in fungal meroterpenoid biosynthesis.

Nakashima Y, Mori T, Nakamura H, Awakawa T, Hoshino S, Senda M, Senda T, Abe I.

Nat Commun. 2018 Jan 9;9(1):104. doi: 10.1038/s41467-017-02371-w.

23.

Leading role of TBP in the Establishment of Complexity in Eukaryotic Transcription Initiation Systems.

Kawakami E, Adachi N, Senda T, Horikoshi M.

Cell Rep. 2017 Dec 26;21(13):3941-3956. doi: 10.1016/j.celrep.2017.12.034.

24.

Anaerobic crystallization of proteins.

Senda M, Senda T.

Biophys Rev. 2018 Apr;10(2):183-189. doi: 10.1007/s12551-017-0345-8. Epub 2017 Dec 2. Review.

25.

Pelvic fractures after definitive and postoperative radiotherapy for cervical cancer: A retrospective analysis of risk factors.

Yamamoto K, Nagao S, Suzuki K, Kogiku A, Senda T, Yano H, Kitai M, Shiozaki T, Matsuoka K, Yamaguchi S.

Gynecol Oncol. 2017 Dec;147(3):585-588. doi: 10.1016/j.ygyno.2017.09.035. Epub 2017 Oct 18.

PMID:
29055558
26.

Experimental phase determination with selenomethionine or mercury-derivatization in serial femtosecond crystallography.

Yamashita K, Kuwabara N, Nakane T, Murai T, Mizohata E, Sugahara M, Pan D, Masuda T, Suzuki M, Sato T, Kodan A, Yamaguchi T, Nango E, Tanaka T, Tono K, Joti Y, Kameshima T, Hatsui T, Yabashi M, Manya H, Endo T, Kato R, Senda T, Kato H, Iwata S, Ago H, Yamamoto M, Yumoto F, Nakatsu T.

IUCrJ. 2017 Aug 8;4(Pt 5):639-647. doi: 10.1107/S2052252517008557. eCollection 2017 Sep 1.

27.

Amino acid residues critical for DNA binding and inducer recognition in CbnR, a LysR-type transcriptional regulator from Cupriavidus necator NH9.

Moriuchi R, Takada K, Takabayashi M, Yamamoto Y, Shimodaira J, Kuroda N, Akiyama E, Udagawa M, Minai R, Fukuda M, Senda T, Ogawa N.

Biosci Biotechnol Biochem. 2017 Nov;81(11):2119-2129. doi: 10.1080/09168451.2017.1373592. Epub 2017 Sep 22.

PMID:
28936918
28.

Human Tissue-Resident Memory T Cells Are Defined by Core Transcriptional and Functional Signatures in Lymphoid and Mucosal Sites.

Kumar BV, Ma W, Miron M, Granot T, Guyer RS, Carpenter DJ, Senda T, Sun X, Ho SH, Lerner H, Friedman AL, Shen Y, Farber DL.

Cell Rep. 2017 Sep 19;20(12):2921-2934. doi: 10.1016/j.celrep.2017.08.078.

29.

Differential Mechanisms for SHP2 Binding and Activation Are Exploited by Geographically Distinct Helicobacter pylori CagA Oncoproteins.

Hayashi T, Senda M, Suzuki N, Nishikawa H, Ben C, Tang C, Nagase L, Inoue K, Senda T, Hatakeyama M.

Cell Rep. 2017 Sep 19;20(12):2876-2890. doi: 10.1016/j.celrep.2017.08.080.

30.

The neuropeptide neuromedin U stimulates innate lymphoid cells and type 2 inflammation.

Klose CSN, Mahlakõiv T, Moeller JB, Rankin LC, Flamar AL, Kabata H, Monticelli LA, Moriyama S, Putzel GG, Rakhilin N, Shen X, Kostenis E, König GM, Senda T, Carpenter D, Farber DL, Artis D.

Nature. 2017 Sep 14;549(7671):282-286. doi: 10.1038/nature23676. Epub 2017 Sep 6.

31.

Expression of the GluA2 subunit of glutamate receptors is required for the normal dendritic differentiation of cerebellar Purkinje cells.

Tanaka M, Senda T, Hirashima N.

Neurosci Lett. 2017 Sep 14;657:22-26. doi: 10.1016/j.neulet.2017.07.054. Epub 2017 Jul 31.

PMID:
28774570
32.

Characterization of Heme Orientational Disorder in a Myoglobin Reconstituted with a Trifluoromethyl-Group-Substituted Heme Cofactor.

Kanai Y, Harada A, Shibata T, Nishimura R, Namiki K, Watanabe M, Nakamura S, Yumoto F, Senda T, Suzuki A, Neya S, Yamamoto Y.

Biochemistry. 2017 Aug 29;56(34):4500-4508. doi: 10.1021/acs.biochem.7b00457. Epub 2017 Aug 16.

PMID:
28758387
33.

Human immunology studies using organ donors: Impact of clinical variations on immune parameters in tissues and circulation.

Carpenter DJ, Granot T, Matsuoka N, Senda T, Kumar BV, Thome JJC, Gordon CL, Miron M, Weiner J, Connors T, Lerner H, Friedman A, Kato T, Griesemer AD, Farber DL.

Am J Transplant. 2018 Jan;18(1):74-88. doi: 10.1111/ajt.14434. Epub 2017 Sep 8.

34.

The first crystal structure of a family 129 glycoside hydrolase from a probiotic bacterium reveals critical residues and metal cofactors.

Sato M, Liebschner D, Yamada Y, Matsugaki N, Arakawa T, Wills SS, Hattie M, Stubbs KA, Ito T, Senda T, Ashida H, Fushinobu S.

J Biol Chem. 2017 Jul 21;292(29):12126-12138. doi: 10.1074/jbc.M117.777391. Epub 2017 May 25.

35.

The crystal structure of a new O-demethylase from Sphingobium sp. strain SYK-6.

Harada A, Kamimura N, Takeuchi K, Yu HY, Masai E, Senda T.

FEBS J. 2017 Jun;284(12):1855-1867. doi: 10.1111/febs.14085. Epub 2017 May 11.

36.

Dendritic Cells Display Subset and Tissue-Specific Maturation Dynamics over Human Life.

Granot T, Senda T, Carpenter DJ, Matsuoka N, Weiner J, Gordon CL, Miron M, Kumar BV, Griesemer A, Ho SH, Lerner H, Thome JJC, Connors T, Reizis B, Farber DL.

Immunity. 2017 Mar 21;46(3):504-515. doi: 10.1016/j.immuni.2017.02.019.

37.

Improved method for soluble expression and rapid purification of yeast TFIIA.

Adachi N, Aizawa K, Kratzer Y, Saijo S, Shimizu N, Senda T.

Protein Expr Purif. 2017 May;133:50-56. doi: 10.1016/j.pep.2017.02.013. Epub 2017 Mar 1.

PMID:
28259734
38.

3D structural analysis of protein O-mannosyl kinase, POMK, a causative gene product of dystroglycanopathy.

Nagae M, Mishra SK, Neyazaki M, Oi R, Ikeda A, Matsugaki N, Akashi S, Manya H, Mizuno M, Yagi H, Kato K, Senda T, Endo T, Nogi T, Yamaguchi Y.

Genes Cells. 2017 Apr;22(4):348-359. doi: 10.1111/gtc.12480. Epub 2017 Mar 2.

39.

A disturbance of intestinal epithelial cell population and kinetics in APC1638T mice.

Wang T, Onouchi T, Yamada NO, Matsuda S, Senda T.

Med Mol Morphol. 2017 Jun;50(2):94-102. doi: 10.1007/s00795-016-0152-5. Epub 2017 Jan 9.

PMID:
28070680
40.

Crystallographic analysis of murine p24γ2 Golgi dynamics domain.

Nagae M, Liebschner D, Yamada Y, Morita-Matsumoto K, Matsugaki N, Senda T, Fujita M, Kinoshita T, Yamaguchi Y.

Proteins. 2017 Apr;85(4):764-770. doi: 10.1002/prot.25242. Epub 2017 Jan 23.

PMID:
28066915
41.

A Method for Evaluating the Efficacy of Antifouling Paints Using Mytilus galloprovincialis in the Laboratory in a Flow-Through System.

Kojima R, Kobayashi S, Satuito CG, Katsuyama I, Ando H, Seki Y, Senda T.

PLoS One. 2016 Dec 13;11(12):e0168172. doi: 10.1371/journal.pone.0168172. eCollection 2016.

42.

Overcoming a hemihedral twinning problem in tetrahydrofolate-dependent O-demethylase crystals by the microseeding method.

Harada A, Sato Y, Kamimura N, Venugopalan N, Masai E, Senda T.

Acta Crystallogr F Struct Biol Commun. 2016 Dec 1;72(Pt 12):897-902. Epub 2016 Nov 30.

43.

Pregnancy and cesarean delivery after multimodal therapy for vulvar carcinoma: A case report.

Toriyabe K, Taniguchi H, Senda T, Nakano M, Kobayashi Y, Izawa M, Tanaka H, Asakura T, Tabata T, Ikeda T.

Mol Clin Oncol. 2016 Nov;5(5):583-586. Epub 2016 Sep 19.

44.

Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of α-dystroglycan.

Kuwabara N, Manya H, Yamada T, Tateno H, Kanagawa M, Kobayashi K, Akasaka-Manya K, Hirose Y, Mizuno M, Ikeguchi M, Toda T, Hirabayashi J, Senda T, Endo T, Kato R.

Proc Natl Acad Sci U S A. 2016 Aug 16;113(33):9280-5. doi: 10.1073/pnas.1525545113. Epub 2016 Aug 4.

45.

Impact of structural polymorphism for the Helicobacter pylori CagA oncoprotein on binding to polarity-regulating kinase PAR1b.

Nishikawa H, Hayashi T, Arisaka F, Senda T, Hatakeyama M.

Sci Rep. 2016 Jul 22;6:30031. doi: 10.1038/srep30031.

46.

A Bioluminescence Assay System for Imaging Metal Cationic Activities in Urban Aerosols.

Kim SB, Naganawa R, Murata S, Nakayama T, Miller S, Senda T.

Methods Mol Biol. 2016;1461:279-87. doi: 10.1007/978-1-4939-3813-1_23.

PMID:
27424913
47.

A class-A GPCR solubilized under high hydrostatic pressure retains its ligand binding ability.

Katayama Y, Suzuki T, Ebisawa T, Ohtsuka J, Wang S, Natsume R, Lo YH, Senda T, Nagamine T, Hull JJ, Matsumoto S, Nagasawa H, Nagata K, Tanokura M.

Biochim Biophys Acta. 2016 Sep;1858(9):2145-2151. doi: 10.1016/j.bbamem.2016.06.012. Epub 2016 Jun 21.

48.

Uncovering ancient transcription systems with a novel evolutionary indicator.

Adachi N, Senda T, Horikoshi M.

Sci Rep. 2016 Jun 16;6:27922. doi: 10.1038/srep27922.

49.

On the influence of crystal size and wavelength on native SAD phasing.

Liebschner D, Yamada Y, Matsugaki N, Senda M, Senda T.

Acta Crystallogr D Struct Biol. 2016 Jun;72(Pt 6):728-41. doi: 10.1107/S2059798316005349. Epub 2016 May 25.

PMID:
27303793
50.

Structural reverse genetics study of the PI5P4Kβ-nucleotide complexes reveals the presence of the GTP bioenergetic system in mammalian cells.

Takeuchi K, Senda M, Lo YH, Kofuji S, Ikeda Y, Sasaki AT, Senda T.

FEBS J. 2016 Oct;283(19):3556-3562. doi: 10.1111/febs.13739. Review.

Supplemental Content

Support Center