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Items: 1 to 50 of 277

1.

Human Lymph Nodes Maintain TCF-1hi Memory T Cells with High Functional Potential and Clonal Diversity throughout Life.

Miron M, Kumar BV, Meng W, Granot T, Carpenter DJ, Senda T, Chen D, Rosenfeld AM, Zhang B, Lerner H, Friedman AL, Hershberg U, Shen Y, Rahman A, Luning Prak ET, Farber DL.

J Immunol. 2018 Oct 1;201(7):2132-2140. doi: 10.4049/jimmunol.1800716. Epub 2018 Aug 15.

PMID:
30111633
2.

Functional activity of the H3.3 histone chaperone complex HIRA requires trimerization of the HIRA subunit.

Ray-Gallet D, Ricketts MD, Sato Y, Gupta K, Boyarchuk E, Senda T, Marmorstein R, Almouzni G.

Nat Commun. 2018 Aug 6;9(1):3103. doi: 10.1038/s41467-018-05581-y.

3.

Structural and Computational Bases for Dramatic Skeletal Rearrangement in Anditomin Biosynthesis.

Nakashima Y, Mitsuhashi T, Matsuda Y, Senda M, Sato H, Yamazaki M, Uchiyama M, Senda T, Abe I.

J Am Chem Soc. 2018 Aug 1;140(30):9743-9750. doi: 10.1021/jacs.8b06084. Epub 2018 Jul 18.

PMID:
29972643
4.

Validation and application of a novel APC antibody in western blotting, immunoprecipitation, and immunohistochemistry.

Yamada NO, Wenduerma, Matsuda S, Senda T.

Med Mol Morphol. 2018 Jun 19. doi: 10.1007/s00795-018-0196-9. [Epub ahead of print]

PMID:
29923125
5.

BRI2 as an anti-Alzheimer gene.

Matsuda S, Senda T.

Med Mol Morphol. 2018 Apr 23. doi: 10.1007/s00795-018-0191-1. [Epub ahead of print] Review.

PMID:
29687167
6.

Crystal structure of the nitrosuccinate lyase CreD in complex with fumarate provides insights into the catalytic mechanism for nitrous acid elimination.

Katsuyama Y, Sato Y, Sugai Y, Higashiyama Y, Senda M, Senda T, Ohnishi Y.

FEBS J. 2018 Apr;285(8):1540-1555. doi: 10.1111/febs.14429. Epub 2018 Mar 24.

PMID:
29505698
7.

Crystal structure of the DNA-binding domain of the LysR-type transcriptional regulator CbnR in complex with a DNA fragment of the recognition-binding site in the promoter region.

Koentjoro MP, Adachi N, Senda M, Ogawa N, Senda T.

FEBS J. 2018 Mar;285(5):977-989. doi: 10.1111/febs.14380. Epub 2018 Jan 28.

PMID:
29323785
8.

Structure function and engineering of multifunctional non-heme iron dependent oxygenases in fungal meroterpenoid biosynthesis.

Nakashima Y, Mori T, Nakamura H, Awakawa T, Hoshino S, Senda M, Senda T, Abe I.

Nat Commun. 2018 Jan 9;9(1):104. doi: 10.1038/s41467-017-02371-w.

9.

Leading role of TBP in the Establishment of Complexity in Eukaryotic Transcription Initiation Systems.

Kawakami E, Adachi N, Senda T, Horikoshi M.

Cell Rep. 2017 Dec 26;21(13):3941-3956. doi: 10.1016/j.celrep.2017.12.034.

10.

Anaerobic crystallization of proteins.

Senda M, Senda T.

Biophys Rev. 2018 Apr;10(2):183-189. doi: 10.1007/s12551-017-0345-8. Epub 2017 Dec 2. Review.

11.

Pelvic fractures after definitive and postoperative radiotherapy for cervical cancer: A retrospective analysis of risk factors.

Yamamoto K, Nagao S, Suzuki K, Kogiku A, Senda T, Yano H, Kitai M, Shiozaki T, Matsuoka K, Yamaguchi S.

Gynecol Oncol. 2017 Dec;147(3):585-588. doi: 10.1016/j.ygyno.2017.09.035. Epub 2017 Oct 18.

PMID:
29055558
12.

Experimental phase determination with selenomethionine or mercury-derivatization in serial femtosecond crystallography.

Yamashita K, Kuwabara N, Nakane T, Murai T, Mizohata E, Sugahara M, Pan D, Masuda T, Suzuki M, Sato T, Kodan A, Yamaguchi T, Nango E, Tanaka T, Tono K, Joti Y, Kameshima T, Hatsui T, Yabashi M, Manya H, Endo T, Kato R, Senda T, Kato H, Iwata S, Ago H, Yamamoto M, Yumoto F, Nakatsu T.

IUCrJ. 2017 Aug 8;4(Pt 5):639-647. doi: 10.1107/S2052252517008557. eCollection 2017 Sep 1.

13.

Amino acid residues critical for DNA binding and inducer recognition in CbnR, a LysR-type transcriptional regulator from Cupriavidus necator NH9.

Moriuchi R, Takada K, Takabayashi M, Yamamoto Y, Shimodaira J, Kuroda N, Akiyama E, Udagawa M, Minai R, Fukuda M, Senda T, Ogawa N.

Biosci Biotechnol Biochem. 2017 Nov;81(11):2119-2129. doi: 10.1080/09168451.2017.1373592. Epub 2017 Sep 22.

PMID:
28936918
14.

Human Tissue-Resident Memory T Cells Are Defined by Core Transcriptional and Functional Signatures in Lymphoid and Mucosal Sites.

Kumar BV, Ma W, Miron M, Granot T, Guyer RS, Carpenter DJ, Senda T, Sun X, Ho SH, Lerner H, Friedman AL, Shen Y, Farber DL.

Cell Rep. 2017 Sep 19;20(12):2921-2934. doi: 10.1016/j.celrep.2017.08.078.

15.

Differential Mechanisms for SHP2 Binding and Activation Are Exploited by Geographically Distinct Helicobacter pylori CagA Oncoproteins.

Hayashi T, Senda M, Suzuki N, Nishikawa H, Ben C, Tang C, Nagase L, Inoue K, Senda T, Hatakeyama M.

Cell Rep. 2017 Sep 19;20(12):2876-2890. doi: 10.1016/j.celrep.2017.08.080.

16.

The neuropeptide neuromedin U stimulates innate lymphoid cells and type 2 inflammation.

Klose CSN, Mahlakõiv T, Moeller JB, Rankin LC, Flamar AL, Kabata H, Monticelli LA, Moriyama S, Putzel GG, Rakhilin N, Shen X, Kostenis E, König GM, Senda T, Carpenter D, Farber DL, Artis D.

Nature. 2017 Sep 14;549(7671):282-286. doi: 10.1038/nature23676. Epub 2017 Sep 6.

17.

Expression of the GluA2 subunit of glutamate receptors is required for the normal dendritic differentiation of cerebellar Purkinje cells.

Tanaka M, Senda T, Hirashima N.

Neurosci Lett. 2017 Sep 14;657:22-26. doi: 10.1016/j.neulet.2017.07.054. Epub 2017 Jul 31.

PMID:
28774570
18.

Characterization of Heme Orientational Disorder in a Myoglobin Reconstituted with a Trifluoromethyl-Group-Substituted Heme Cofactor.

Kanai Y, Harada A, Shibata T, Nishimura R, Namiki K, Watanabe M, Nakamura S, Yumoto F, Senda T, Suzuki A, Neya S, Yamamoto Y.

Biochemistry. 2017 Aug 29;56(34):4500-4508. doi: 10.1021/acs.biochem.7b00457. Epub 2017 Aug 16.

PMID:
28758387
19.

Human immunology studies using organ donors: Impact of clinical variations on immune parameters in tissues and circulation.

Carpenter DJ, Granot T, Matsuoka N, Senda T, Kumar BV, Thome JJC, Gordon CL, Miron M, Weiner J, Connors T, Lerner H, Friedman A, Kato T, Griesemer AD, Farber DL.

Am J Transplant. 2018 Jan;18(1):74-88. doi: 10.1111/ajt.14434. Epub 2017 Sep 8.

PMID:
28719147
20.

The first crystal structure of a family 129 glycoside hydrolase from a probiotic bacterium reveals critical residues and metal cofactors.

Sato M, Liebschner D, Yamada Y, Matsugaki N, Arakawa T, Wills SS, Hattie M, Stubbs KA, Ito T, Senda T, Ashida H, Fushinobu S.

J Biol Chem. 2017 Jul 21;292(29):12126-12138. doi: 10.1074/jbc.M117.777391. Epub 2017 May 25.

21.

The crystal structure of a new O-demethylase from Sphingobium sp. strain SYK-6.

Harada A, Kamimura N, Takeuchi K, Yu HY, Masai E, Senda T.

FEBS J. 2017 Jun;284(12):1855-1867. doi: 10.1111/febs.14085. Epub 2017 May 11.

22.

Dendritic Cells Display Subset and Tissue-Specific Maturation Dynamics over Human Life.

Granot T, Senda T, Carpenter DJ, Matsuoka N, Weiner J, Gordon CL, Miron M, Kumar BV, Griesemer A, Ho SH, Lerner H, Thome JJC, Connors T, Reizis B, Farber DL.

Immunity. 2017 Mar 21;46(3):504-515. doi: 10.1016/j.immuni.2017.02.019.

23.

Improved method for soluble expression and rapid purification of yeast TFIIA.

Adachi N, Aizawa K, Kratzer Y, Saijo S, Shimizu N, Senda T.

Protein Expr Purif. 2017 May;133:50-56. doi: 10.1016/j.pep.2017.02.013. Epub 2017 Mar 1.

PMID:
28259734
24.

3D structural analysis of protein O-mannosyl kinase, POMK, a causative gene product of dystroglycanopathy.

Nagae M, Mishra SK, Neyazaki M, Oi R, Ikeda A, Matsugaki N, Akashi S, Manya H, Mizuno M, Yagi H, Kato K, Senda T, Endo T, Nogi T, Yamaguchi Y.

Genes Cells. 2017 Apr;22(4):348-359. doi: 10.1111/gtc.12480. Epub 2017 Mar 2.

25.

A disturbance of intestinal epithelial cell population and kinetics in APC1638T mice.

Wang T, Onouchi T, Yamada NO, Matsuda S, Senda T.

Med Mol Morphol. 2017 Jun;50(2):94-102. doi: 10.1007/s00795-016-0152-5. Epub 2017 Jan 9.

PMID:
28070680
26.

Crystallographic analysis of murine p24γ2 Golgi dynamics domain.

Nagae M, Liebschner D, Yamada Y, Morita-Matsumoto K, Matsugaki N, Senda T, Fujita M, Kinoshita T, Yamaguchi Y.

Proteins. 2017 Apr;85(4):764-770. doi: 10.1002/prot.25242. Epub 2017 Jan 23.

PMID:
28066915
27.

A Method for Evaluating the Efficacy of Antifouling Paints Using Mytilus galloprovincialis in the Laboratory in a Flow-Through System.

Kojima R, Kobayashi S, Satuito CG, Katsuyama I, Ando H, Seki Y, Senda T.

PLoS One. 2016 Dec 13;11(12):e0168172. doi: 10.1371/journal.pone.0168172. eCollection 2016.

28.

Overcoming a hemihedral twinning problem in tetrahydrofolate-dependent O-demethylase crystals by the microseeding method.

Harada A, Sato Y, Kamimura N, Venugopalan N, Masai E, Senda T.

Acta Crystallogr F Struct Biol Commun. 2016 Dec 1;72(Pt 12):897-902. Epub 2016 Nov 30.

29.

Pregnancy and cesarean delivery after multimodal therapy for vulvar carcinoma: A case report.

Toriyabe K, Taniguchi H, Senda T, Nakano M, Kobayashi Y, Izawa M, Tanaka H, Asakura T, Tabata T, Ikeda T.

Mol Clin Oncol. 2016 Nov;5(5):583-586. Epub 2016 Sep 19.

30.

Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of α-dystroglycan.

Kuwabara N, Manya H, Yamada T, Tateno H, Kanagawa M, Kobayashi K, Akasaka-Manya K, Hirose Y, Mizuno M, Ikeguchi M, Toda T, Hirabayashi J, Senda T, Endo T, Kato R.

Proc Natl Acad Sci U S A. 2016 Aug 16;113(33):9280-5. doi: 10.1073/pnas.1525545113. Epub 2016 Aug 4.

31.

Impact of structural polymorphism for the Helicobacter pylori CagA oncoprotein on binding to polarity-regulating kinase PAR1b.

Nishikawa H, Hayashi T, Arisaka F, Senda T, Hatakeyama M.

Sci Rep. 2016 Jul 22;6:30031. doi: 10.1038/srep30031.

32.

A Bioluminescence Assay System for Imaging Metal Cationic Activities in Urban Aerosols.

Kim SB, Naganawa R, Murata S, Nakayama T, Miller S, Senda T.

Methods Mol Biol. 2016;1461:279-87. doi: 10.1007/978-1-4939-3813-1_23.

PMID:
27424913
33.

A class-A GPCR solubilized under high hydrostatic pressure retains its ligand binding ability.

Katayama Y, Suzuki T, Ebisawa T, Ohtsuka J, Wang S, Natsume R, Lo YH, Senda T, Nagamine T, Hull JJ, Matsumoto S, Nagasawa H, Nagata K, Tanokura M.

Biochim Biophys Acta. 2016 Sep;1858(9):2145-2151. doi: 10.1016/j.bbamem.2016.06.012. Epub 2016 Jun 21.

34.

Uncovering ancient transcription systems with a novel evolutionary indicator.

Adachi N, Senda T, Horikoshi M.

Sci Rep. 2016 Jun 16;6:27922. doi: 10.1038/srep27922.

35.

On the influence of crystal size and wavelength on native SAD phasing.

Liebschner D, Yamada Y, Matsugaki N, Senda M, Senda T.

Acta Crystallogr D Struct Biol. 2016 Jun;72(Pt 6):728-41. doi: 10.1107/S2059798316005349. Epub 2016 May 25.

PMID:
27303793
36.

Structural reverse genetics study of the PI5P4Kβ-nucleotide complexes reveals the presence of the GTP bioenergetic system in mammalian cells.

Takeuchi K, Senda M, Lo YH, Kofuji S, Ikeda Y, Sasaki AT, Senda T.

FEBS J. 2016 Oct;283(19):3556-3562. doi: 10.1111/febs.13739. Review.

37.

[Structural Study in the Platform for Drug Discovery, Informatics, and Structural Life Science].

Senda T.

Yakugaku Zasshi. 2016;136(3):449-58. doi: 10.1248/yakushi.15-00236-3. Review. Japanese.

38.

Patients that have Undergone Hemodialysis Exhibit Lower Amyloid Deposition in the Brain: Evidence Supporting a Therapeutic Strategy for Alzheimer's Disease by Removal of Blood Amyloid.

Sakai K, Senda T, Hata R, Kuroda M, Hasegawa M, Kato M, Abe M, Kawaguchi K, Nakai S, Hiki Y, Yuzawa Y, Kitaguchi N.

J Alzheimers Dis. 2016;51(4):997-1002. doi: 10.3233/JAD-151139.

PMID:
26923028
39.

The Lipid Kinase PI5P4Kβ Is an Intracellular GTP Sensor for Metabolism and Tumorigenesis.

Sumita K, Lo YH, Takeuchi K, Senda M, Kofuji S, Ikeda Y, Terakawa J, Sasaki M, Yoshino H, Majd N, Zheng Y, Kahoud ER, Yokota T, Emerling BM, Asara JM, Ishida T, Locasale JW, Daikoku T, Anastasiou D, Senda T, Sasaki AT.

Mol Cell. 2016 Jan 21;61(2):187-98. doi: 10.1016/j.molcel.2015.12.011. Epub 2016 Jan 7.

40.
41.

Cation-driven Optical Properties of Artificial Luciferases.

Kim SB, Miller S, Suzuki N, Senda T, Nishihara R, Suzuki K.

Anal Sci. 2015;31(10):955-60. doi: 10.2116/analsci.31.955.

42.

[Memoirs of the Late Prof Hisao Fujita].

Senda T.

Kaibogaku Zasshi. 2015 Jun;90(3):13-4. Japanese. No abstract available.

PMID:
26164997
43.

Requirement of DLG1 for cardiovascular development and tissue elongation during cochlear, enteric, and skeletal development: possible role in convergent extension.

Iizuka-Kogo A, Senda T, Akiyama T, Shimomura A, Nomura R, Hasegawa Y, Yamamura K, Kogo H, Sawai N, Matsuzaki T.

PLoS One. 2015 Apr 10;10(4):e0123965. doi: 10.1371/journal.pone.0123965. eCollection 2015.

44.

The osteocyte plays multiple roles in bone remodeling and mineral homeostasis.

Chen H, Senda T, Kubo KY.

Med Mol Morphol. 2015 Jun;48(2):61-8. doi: 10.1007/s00795-015-0099-y. Epub 2015 Mar 20. Review.

PMID:
25791218
45.

Crystallization and preliminary crystallographic analysis of acetophenone reductase from Geotrichum candidum NBRC 4597.

Sugiyama Y, Senda M, Senda T, Matsuda T.

Acta Crystallogr F Struct Biol Commun. 2015 Mar;71(Pt 3):320-3. doi: 10.1107/S2053230X15002265. Epub 2015 Feb 19.

46.

Structure of a BAG6 (Bcl-2-associated athanogene 6)-Ubl4a (ubiquitin-like protein 4a) complex reveals a novel binding interface that functions in tail-anchored protein biogenesis.

Kuwabara N, Minami R, Yokota N, Matsumoto H, Senda T, Kawahara H, Kato R.

J Biol Chem. 2015 Apr 10;290(15):9387-98. doi: 10.1074/jbc.M114.631804. Epub 2015 Feb 20.

47.

Formation of a flavin-linked peptide.

Morikawa M, Kino K, Senda T, Suzuki M, Kobayashi T, Miyazawa H.

Molecules. 2014 Jul 4;19(7):9552-61. doi: 10.3390/molecules19079552.

48.

Complete pyridine-nucleotide-specific conversion of an NADH-dependent ferredoxin reductase.

Nishizawa A, Harada A, Senda M, Tachihara Y, Muramatsu D, Kishigami S, Mori S, Sugiyama K, Senda T, Kimura S.

Biochem J. 2014 Sep 1;462(2):257-65. doi: 10.1042/BJ20140384.

PMID:
24902961
49.

[Immuno-EM in solution using atmospheric scanning electron microscope (ASEM) applicable to various antibodies].

Ebihara T, Nishiyama H, Sato M, Senda T, Suga M, Sato C.

Seikagaku. 2014 Feb;86(1):103-10. Review. Japanese. No abstract available.

PMID:
24693708
50.

Targeted deletion of the C-terminus of the mouse adenomatous polyposis coli tumor suppressor results in neurologic phenotypes related to schizophrenia.

Onouchi T, Kobayashi K, Sakai K, Shimomura A, Smits R, Sumi-Ichinose C, Kurosumi M, Takao K, Nomura R, Iizuka-Kogo A, Suzuki H, Kondo K, Akiyama T, Miyakawa T, Fodde R, Senda T.

Mol Brain. 2014 Mar 29;7:21. doi: 10.1186/1756-6606-7-21.

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