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Items: 15

1.

Defining the phospho-adhesome through the phosphoproteomic analysis of integrin signalling.

Robertson J, Jacquemet G, Byron A, Jones MC, Warwood S, Selley JN, Knight D, Humphries JD, Humphries MJ.

Nat Commun. 2015 Feb 13;6:6265. doi: 10.1038/ncomms7265.

2.

Proteomic analysis of extracellular matrix from the hepatic stellate cell line LX-2 identifies CYR61 and Wnt-5a as novel constituents of fibrotic liver.

Rashid ST, Humphries JD, Byron A, Dhar A, Askari JA, Selley JN, Knight D, Goldin RD, Thursz M, Humphries MJ.

J Proteome Res. 2012 Aug 3;11(8):4052-64. doi: 10.1021/pr3000927. Epub 2012 Jun 28.

3.

The mzIdentML data standard for mass spectrometry-based proteomics results.

Jones AR, Eisenacher M, Mayer G, Kohlbacher O, Siepen J, Hubbard SJ, Selley JN, Searle BC, Shofstahl J, Seymour SL, Julian R, Binz PA, Deutsch EW, Hermjakob H, Reisinger F, Griss J, Vizcaíno JA, Chambers M, Pizarro A, Creasy D.

Mol Cell Proteomics. 2012 Jul;11(7):M111.014381. doi: 10.1074/mcp.M111.014381. Epub 2012 Feb 27.

4.

Glucose depletion inhibits translation initiation via eIF4A loss and subsequent 48S preinitiation complex accumulation, while the pentose phosphate pathway is coordinately up-regulated.

Castelli LM, Lui J, Campbell SG, Rowe W, Zeef LA, Holmes LE, Hoyle NP, Bone J, Selley JN, Sims PF, Ashe MP.

Mol Biol Cell. 2011 Sep;22(18):3379-93. doi: 10.1091/mbc.E11-02-0153. Epub 2011 Jul 27.

5.

Identifying eIF4E-binding protein translationally-controlled transcripts reveals links to mRNAs bound by specific PUF proteins.

Cridge AG, Castelli LM, Smirnova JB, Selley JN, Rowe W, Hubbard SJ, McCarthy JE, Ashe MP, Grant CM, Pavitt GD.

Nucleic Acids Res. 2010 Dec;38(22):8039-50. doi: 10.1093/nar/gkq686. Epub 2010 Aug 12.

6.

Upstream sequence elements direct post-transcriptional regulation of gene expression under stress conditions in yeast.

Lawless C, Pearson RD, Selley JN, Smirnova JB, Grant CM, Ashe MP, Pavitt GD, Hubbard SJ.

BMC Genomics. 2009 Jan 7;10:7. doi: 10.1186/1471-2164-10-7.

7.

PepSeeker: mining information from proteomic data.

Siepen JA, Selley JN, Hubbard SJ.

Methods Mol Biol. 2008;484:319-32. doi: 10.1007/978-1-59745-398-1_21.

PMID:
18592189
8.

ISPIDER Central: an integrated database web-server for proteomics.

Siepen JA, Belhajjame K, Selley JN, Embury SM, Paton NW, Goble CA, Oliver SG, Stevens R, Zamboulis L, Martin N, Poulovassillis A, Jones P, Côté R, Hermjakob H, Pentony MM, Jones DT, Orengo CA, Hubbard SJ.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W485-90. doi: 10.1093/nar/gkn196. Epub 2008 Apr 25.

9.

Global translational responses to oxidative stress impact upon multiple levels of protein synthesis.

Shenton D, Smirnova JB, Selley JN, Carroll K, Hubbard SJ, Pavitt GD, Ashe MP, Grant CM.

J Biol Chem. 2006 Sep 29;281(39):29011-21. Epub 2006 Jul 18.

10.

Global gene expression profiling reveals widespread yet distinctive translational responses to different eukaryotic translation initiation factor 2B-targeting stress pathways.

Smirnova JB, Selley JN, Sanchez-Cabo F, Carroll K, Eddy AA, McCarthy JE, Hubbard SJ, Pavitt GD, Grant CM, Ashe MP.

Mol Cell Biol. 2005 Nov;25(21):9340-9.

11.

CINEMA-MX: a modular multiple alignment editor.

Lord PW, Selley JN, Attwood TK.

Bioinformatics. 2002 Oct;18(10):1402-3.

PMID:
12376388
12.

EASY--an Expert Analysis SYstem for interpreting database search outputs.

Selley JN, Swift J, Attwood TK.

Bioinformatics. 2001 Jan;17(1):105-6.

PMID:
11222269
13.

PRINTS-S: the database formerly known as PRINTS.

Attwood TK, Croning MD, Flower DR, Lewis AP, Mabey JE, Scordis P, Selley JN, Wright W.

Nucleic Acids Res. 2000 Jan 1;28(1):225-7.

14.

PRINTS prepares for the new millennium.

Attwood TK, Flower DR, Lewis AP, Mabey JE, Morgan SR, Scordis P, Selley JN, Wright W.

Nucleic Acids Res. 1999 Jan 1;27(1):220-5.

15.

The PRINTS protein fingerprint database in its fifth year.

Attwood TK, Beck ME, Flower DR, Scordis P, Selley JN.

Nucleic Acids Res. 1998 Jan 1;26(1):304-8.

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