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Control of Development, Secondary Metabolism and Light-Dependent Carotenoid Biosynthesis by the Velvet Complex of Neurospora crassa.

Bayram ÖS, Dettmann A, Karahoda B, Moloney NM, Ormsby T, McGowan J, Cea-Sánchez S, Miralles-Durán A, Brancini GTP, Luque EM, Fitzpatrick DA, Cánovas D, Corrochano LM, Doyle S, Selker EU, Seiler S, Bayram Ö.

Genetics. 2019 Jul;212(3):691-710. doi: 10.1534/genetics.119.302277. Epub 2019 May 8.


Nucleosome Positioning by an Evolutionarily Conserved Chromatin Remodeler Prevents Aberrant DNA Methylation in Neurospora.

Klocko AD, Uesaka M, Ormsby T, Rountree MR, Wiles ET, Adhvaryu KK, Honda S, Selker EU.

Genetics. 2019 Feb;211(2):563-578. doi: 10.1534/genetics.118.301711. Epub 2018 Dec 15.


ASH1-catalyzed H3K36 methylation drives gene repression and marks H3K27me2/3-competent chromatin.

Bicocca VT, Ormsby T, Adhvaryu KK, Honda S, Selker EU.

Elife. 2018 Nov 23;7. pii: e41497. doi: 10.7554/eLife.41497.


Telomere repeats induce domains of H3K27 methylation in Neurospora.

Jamieson K, McNaught KJ, Ormsby T, Leggett NA, Honda S, Selker EU.

Elife. 2018 Jan 3;7. pii: e31216. doi: 10.7554/eLife.31216.


Reply to Hogan: Direct evidence of RNA-protein interactions and rewiring.

Wilinski D, Buter N, Klocko AD, Lapointe CP, Selker EU, Gasch AP, Wickens M.

Proc Natl Acad Sci U S A. 2017 Dec 19;114(51):E10854-E10855. doi: 10.1073/pnas.1717585114. Epub 2017 Dec 5. No abstract available.


Induction of H3K9me3 and DNA methylation by tethered heterochromatin factors in Neurospora crassa.

Gessaman JD, Selker EU.

Proc Natl Acad Sci U S A. 2017 Nov 7;114(45):E9598-E9607. doi: 10.1073/pnas.1715049114. Epub 2017 Oct 23.


Recurrent rewiring and emergence of RNA regulatory networks.

Wilinski D, Buter N, Klocko AD, Lapointe CP, Selker EU, Gasch AP, Wickens M.

Proc Natl Acad Sci U S A. 2017 Apr 4;114(14):E2816-E2825. doi: 10.1073/pnas.1617777114. Epub 2017 Mar 20.


H3K27 methylation: a promiscuous repressive chromatin mark.

Wiles ET, Selker EU.

Curr Opin Genet Dev. 2017 Apr;43:31-37. doi: 10.1016/j.gde.2016.11.001. Epub 2016 Dec 8. Review.


Normal chromosome conformation depends on subtelomeric facultative heterochromatin in Neurospora crassa.

Klocko AD, Ormsby T, Galazka JM, Leggett NA, Uesaka M, Honda S, Freitag M, Selker EU.

Proc Natl Acad Sci U S A. 2016 Dec 27;113(52):15048-15053. doi: 10.1073/pnas.1615546113. Epub 2016 Nov 16.


Dual chromatin recognition by the histone deacetylase complex HCHC is required for proper DNA methylation in Neurospora crassa.

Honda S, Bicocca VT, Gessaman JD, Rountree MR, Yokoyama A, Yu EY, Selker JM, Selker EU.

Proc Natl Acad Sci U S A. 2016 Oct 11;113(41):E6135-E6144. Epub 2016 Sep 28. Erratum in: Proc Natl Acad Sci U S A. 2017 Feb 7;114(6):E1037.


Neurospora chromosomes are organized by blocks of importin alpha-dependent heterochromatin that are largely independent of H3K9me3.

Galazka JM, Klocko AD, Uesaka M, Honda S, Selker EU, Freitag M.

Genome Res. 2016 Aug;26(8):1069-80. doi: 10.1101/gr.203182.115. Epub 2016 Jun 3.


Loss of HP1 causes depletion of H3K27me3 from facultative heterochromatin and gain of H3K27me2 at constitutive heterochromatin.

Jamieson K, Wiles ET, McNaught KJ, Sidoli S, Leggett N, Shao Y, Garcia BA, Selker EU.

Genome Res. 2016 Jan;26(1):97-107. doi: 10.1101/gr.194555.115. Epub 2015 Nov 4.


Neurospora importin α is required for normal heterochromatic formation and DNA methylation.

Klocko AD, Rountree MR, Grisafi PL, Hays SM, Adhvaryu KK, Selker EU.

PLoS Genet. 2015 Mar 20;11(3):e1005083. doi: 10.1371/journal.pgen.1005083. eCollection 2015 Mar.


The cullin-4 complex DCDC does not require E3 ubiquitin ligase elements to control heterochromatin in Neurospora crassa.

Adhvaryu KK, Gessaman JD, Honda S, Lewis ZA, Grisafi PL, Selker EU.

Eukaryot Cell. 2015 Jan;14(1):25-8. doi: 10.1128/EC.00212-14. Epub 2014 Oct 31.


Neurospora crassa, a model system for epigenetics research.

Aramayo R, Selker EU.

Cold Spring Harb Perspect Biol. 2013 Oct 1;5(10):a017921. doi: 10.1101/cshperspect.a017921. Review.


Regional control of histone H3 lysine 27 methylation in Neurospora.

Jamieson K, Rountree MR, Lewis ZA, Stajich JE, Selker EU.

Proc Natl Acad Sci U S A. 2013 Apr 9;110(15):6027-32. doi: 10.1073/pnas.1303750110. Epub 2013 Mar 25.


The common ancestral core of vertebrate and fungal telomerase RNAs.

Qi X, Li Y, Honda S, Hoffmann S, Marz M, Mosig A, Podlevsky JD, Stadler PF, Selker EU, Chen JJ.

Nucleic Acids Res. 2013 Jan 7;41(1):450-62. doi: 10.1093/nar/gks980. Epub 2012 Oct 23.


Heterochromatin protein 1 forms distinct complexes to direct histone deacetylation and DNA methylation.

Honda S, Lewis ZA, Shimada K, Fischle W, Sack R, Selker EU.

Nat Struct Mol Biol. 2012 Apr 15;19(5):471-7, S1. doi: 10.1038/nsmb.2274.


Substitutions in the amino-terminal tail of neurospora histone H3 have varied effects on DNA methylation.

Adhvaryu KK, Berge E, Tamaru H, Freitag M, Selker EU.

PLoS Genet. 2011 Dec;7(12):e1002423. doi: 10.1371/journal.pgen.1002423. Epub 2011 Dec 29.


CHD1 remodels chromatin and influences transient DNA methylation at the clock gene frequency.

Belden WJ, Lewis ZA, Selker EU, Loros JJ, Dunlap JC.

PLoS Genet. 2011 Jul;7(7):e1002166. doi: 10.1371/journal.pgen.1002166. Epub 2011 Jul 21.



Selker EU.

Curr Biol. 2011 Feb 22;21(4):R139-40. doi: 10.1016/j.cub.2011.01.006. No abstract available.


DNA methylation and normal chromosome behavior in Neurospora depend on five components of a histone methyltransferase complex, DCDC.

Lewis ZA, Adhvaryu KK, Honda S, Shiver AL, Knip M, Sack R, Selker EU.

PLoS Genet. 2010 Nov 4;6(11):e1001196. doi: 10.1371/journal.pgen.1001196.


H2B- and H3-specific histone deacetylases are required for DNA methylation in Neurospora crassa.

Smith KM, Dobosy JR, Reifsnyder JE, Rountree MR, Anderson DC, Green GR, Selker EU.

Genetics. 2010 Dec;186(4):1207-16. doi: 10.1534/genetics.110.123315. Epub 2010 Sep 27.


Extensive and varied modifications in histone H2B of wild-type and histone deacetylase 1 mutant Neurospora crassa.

Anderson DC, Green GR, Smith K, Selker EU.

Biochemistry. 2010 Jun 29;49(25):5244-57. doi: 10.1021/bi100391w.


Mapping of lysine methylation and acetylation in core histones of Neurospora crassa.

Xiong L, Adhvaryu KK, Selker EU, Wang Y.

Biochemistry. 2010 Jun 29;49(25):5236-43. doi: 10.1021/bi1001322. Erratum in: Biochemistry. 2011 May 3;50(17):3579.


Diverse pathways generate microRNA-like RNAs and Dicer-independent small interfering RNAs in fungi.

Lee HC, Li L, Gu W, Xue Z, Crosthwaite SK, Pertsemlidis A, Lewis ZA, Freitag M, Selker EU, Mello CC, Liu Y.

Mol Cell. 2010 Jun 25;38(6):803-14. doi: 10.1016/j.molcel.2010.04.005. Epub 2010 Apr 22.


DNA methylation and the formation of heterochromatin in Neurospora crassa.

Rountree MR, Selker EU.

Heredity (Edinb). 2010 Jul;105(1):38-44. doi: 10.1038/hdy.2010.44. Epub 2010 Apr 21. Review.


Identification of DIM-7, a protein required to target the DIM-5 H3 methyltransferase to chromatin.

Lewis ZA, Adhvaryu KK, Honda S, Shiver AL, Selker EU.

Proc Natl Acad Sci U S A. 2010 May 4;107(18):8310-5. doi: 10.1073/pnas.1000328107. Epub 2010 Apr 19.


The DMM complex prevents spreading of DNA methylation from transposons to nearby genes in Neurospora crassa.

Honda S, Lewis ZA, Huarte M, Cho LY, David LL, Shi Y, Selker EU.

Genes Dev. 2010 Mar 1;24(5):443-54. doi: 10.1101/gad.1893210. Epub 2010 Feb 5.


PARP is involved in replicative aging in Neurospora crassa.

Kothe GO, Kitamura M, Masutani M, Selker EU, Inoue H.

Fungal Genet Biol. 2010 Apr;47(4):297-309. doi: 10.1016/j.fgb.2009.12.012. Epub 2010 Jan 4.


The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion.

Coleman JJ, Rounsley SD, Rodriguez-Carres M, Kuo A, Wasmann CC, Grimwood J, Schmutz J, Taga M, White GJ, Zhou S, Schwartz DC, Freitag M, Ma LJ, Danchin EG, Henrissat B, Coutinho PM, Nelson DR, Straney D, Napoli CA, Barker BM, Gribskov M, Rep M, Kroken S, Molnár I, Rensing C, Kennell JC, Zamora J, Farman ML, Selker EU, Salamov A, Shapiro H, Pangilinan J, Lindquist E, Lamers C, Grigoriev IV, Geiser DM, Covert SF, Temporini E, Vanetten HD.

PLoS Genet. 2009 Aug;5(8):e1000618. doi: 10.1371/journal.pgen.1000618. Epub 2009 Aug 28.


Tools for fungal proteomics: multifunctional neurospora vectors for gene replacement, protein expression and protein purification.

Honda S, Selker EU.

Genetics. 2009 May;182(1):11-23. doi: 10.1534/genetics.108.098707. Epub 2009 Jan 26.


Protein phosphatase PP1 is required for normal DNA methylation in Neurospora.

Adhvaryu KK, Selker EU.

Genes Dev. 2008 Dec 15;22(24):3391-6. doi: 10.1101/gad.1738008.


Characterization of chromosome ends in the filamentous fungus Neurospora crassa.

Wu C, Kim YS, Smith KM, Li W, Hood HM, Staben C, Selker EU, Sachs MS, Farman ML.

Genetics. 2009 Mar;181(3):1129-45. doi: 10.1534/genetics.107.084392. Epub 2008 Dec 22.


Relics of repeat-induced point mutation direct heterochromatin formation in Neurospora crassa.

Lewis ZA, Honda S, Khlafallah TK, Jeffress JK, Freitag M, Mohn F, Schübeler D, Selker EU.

Genome Res. 2009 Mar;19(3):427-37. doi: 10.1101/gr.086231.108. Epub 2008 Dec 17.


The fungus Neurospora crassa displays telomeric silencing mediated by multiple sirtuins and by methylation of histone H3 lysine 9.

Smith KM, Kothe GO, Matsen CB, Khlafallah TK, Adhvaryu KK, Hemphill M, Freitag M, Motamedi MR, Selker EU.

Epigenetics Chromatin. 2008 Nov 3;1(1):5. doi: 10.1186/1756-8935-1-5.


Rapid SNP discovery and genetic mapping using sequenced RAD markers.

Baird NA, Etter PD, Atwood TS, Currey MC, Shiver AL, Lewis ZA, Selker EU, Cresko WA, Johnson EA.

PLoS One. 2008;3(10):e3376. doi: 10.1371/journal.pone.0003376. Epub 2008 Oct 13.


Direct interaction between DNA methyltransferase DIM-2 and HP1 is required for DNA methylation in Neurospora crassa.

Honda S, Selker EU.

Mol Cell Biol. 2008 Oct;28(19):6044-55. doi: 10.1128/MCB.00823-08. Epub 2008 Aug 4.


A cytosine methyltransferase homologue is essential for sexual development in Aspergillus nidulans.

Lee DW, Freitag M, Selker EU, Aramayo R.

PLoS One. 2008 Jun 25;3(6):e2531. doi: 10.1371/journal.pone.0002531.


High-density detection of restriction-site-associated DNA markers for rapid mapping of mutated loci in Neurospora.

Lewis ZA, Shiver AL, Stiffler N, Miller MR, Johnson EA, Selker EU.

Genetics. 2007 Oct;177(2):1163-71. Epub 2007 Jul 29.


Recurrent locus-specific mutation resulting from a cryptic ectopic insertion in Neurospora.

Perkins DD, Freitag M, Pollard VC, Bailey-Shrode LA, Selker EU, Ebbole DJ.

Genetics. 2007 Feb;175(2):527-44.


The Neurospora crassa White Collar-1 dependent blue light response requires acetylation of histone H3 lysine 14 by NGF-1.

Grimaldi B, Coiro P, Filetici P, Berge E, Dobosy JR, Freitag M, Selker EU, Ballario P.

Mol Biol Cell. 2006 Oct;17(10):4576-83. Epub 2006 Aug 16.


Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae.

Galagan JE, Calvo SE, Cuomo C, Ma LJ, Wortman JR, Batzoglou S, Lee SI, Baştürkmen M, Spevak CC, Clutterbuck J, Kapitonov V, Jurka J, Scazzocchio C, Farman M, Butler J, Purcell S, Harris S, Braus GH, Draht O, Busch S, D'Enfert C, Bouchier C, Goldman GH, Bell-Pedersen D, Griffiths-Jones S, Doonan JH, Yu J, Vienken K, Pain A, Freitag M, Selker EU, Archer DB, Peñalva MA, Oakley BR, Momany M, Tanaka T, Kumagai T, Asai K, Machida M, Nierman WC, Denning DW, Caddick M, Hynes M, Paoletti M, Fischer R, Miller B, Dyer P, Sachs MS, Osmani SA, Birren BW.

Nature. 2005 Dec 22;438(7071):1105-15.


Genome defense and DNA methylation in Neurospora.

Selker EU.

Cold Spring Harb Symp Quant Biol. 2004;69:119-24. Review. No abstract available.


Methylation of histone H3 lysine 36 is required for normal development in Neurospora crassa.

Adhvaryu KK, Morris SA, Strahl BD, Selker EU.

Eukaryot Cell. 2005 Aug;4(8):1455-64.


Controlling DNA methylation: many roads to one modification.

Freitag M, Selker EU.

Curr Opin Genet Dev. 2005 Apr;15(2):191-9. Review.


The 2005 Thomas Hunt Morgan Medal. Robert L. Metzenberg.

Selker EU, Davis RH, Perkins DD.

Genetics. 2005 Feb;169(2):503-5. No abstract available.


In vitro and in vivo analyses of a Phe/Tyr switch controlling product specificity of histone lysine methyltransferases.

Collins RE, Tachibana M, Tamaru H, Smith KM, Jia D, Zhang X, Selker EU, Shinkai Y, Cheng X.

J Biol Chem. 2005 Feb 18;280(7):5563-70. Epub 2004 Dec 6.


GFP as a tool to analyze the organization, dynamics and function of nuclei and microtubules in Neurospora crassa.

Freitag M, Hickey PC, Raju NB, Selker EU, Read ND.

Fungal Genet Biol. 2004 Oct;41(10):897-910.


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