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Items: 1 to 50 of 90

1.

Kinase-controlled phase transition of membraneless organelles in mitosis.

Rai AK, Chen JX, Selbach M, Pelkmans L.

Nature. 2018 Jul;559(7713):211-216. doi: 10.1038/s41586-018-0279-8. Epub 2018 Jul 4.

PMID:
29973724
2.

Maf links Neuregulin1 signaling to cholesterol synthesis in myelinating Schwann cells.

Kim M, Wende H, Walcher J, Kühnemund J, Cheret C, Kempa S, McShane E, Selbach M, Lewin GR, Birchmeier C.

Genes Dev. 2018 May 1;32(9-10):645-657. doi: 10.1101/gad.310490.117. Epub 2018 May 10.

3.

Picky: a simple online PRM and SRM method designer for targeted proteomics.

Zauber H, Kirchner M, Selbach M.

Nat Methods. 2018 Feb 28;15(3):156-157. doi: 10.1038/nmeth.4607. No abstract available.

PMID:
29489744
4.

RNA localization is a key determinant of neurite-enriched proteome.

Zappulo A, van den Bruck D, Ciolli Mattioli C, Franke V, Imami K, McShane E, Moreno-Estelles M, Calviello L, Filipchyk A, Peguero-Sanchez E, Müller T, Woehler A, Birchmeier C, Merino E, Rajewsky N, Ohler U, Mazzoni EO, Selbach M, Akalin A, Chekulaeva M.

Nat Commun. 2017 Sep 19;8(1):583. doi: 10.1038/s41467-017-00690-6.

5.

DDX54 regulates transcriptome dynamics during DNA damage response.

Milek M, Imami K, Mukherjee N, Bortoli F, Zinnall U, Hazapis O, Trahan C, Oeffinger M, Heyd F, Ohler U, Selbach M, Landthaler M.

Genome Res. 2017 Aug;27(8):1344-1359. doi: 10.1101/gr.218438.116. Epub 2017 Jun 8.

6.

Quantitative Proteomic Approach Identifies Vpr Binding Protein as Novel Host Factor Supporting Influenza A Virus Infections in Human Cells.

Sadewasser A, Paki K, Eichelbaum K, Bogdanow B, Saenger S, Budt M, Lesch M, Hinz KP, Herrmann A, Meyer TF, Karlas A, Selbach M, Wolff T.

Mol Cell Proteomics. 2017 May;16(5):728-742. doi: 10.1074/mcp.M116.065904. Epub 2017 Mar 13.

7.

Deciphering the Ubiquitin Code.

Dittmar G, Selbach M.

Mol Cell. 2017 Mar 2;65(5):779-780. doi: 10.1016/j.molcel.2017.02.011.

8.

Quantitative GTPase Affinity Purification Identifies Rho Family Protein Interaction Partners.

Paul F, Zauber H, von Berg L, Rocks O, Daumke O, Selbach M.

Mol Cell Proteomics. 2017 Jan;16(1):73-85. doi: 10.1074/mcp.M116.061531. Epub 2016 Nov 16.

9.

Kinetic Analysis of Protein Stability Reveals Age-Dependent Degradation.

McShane E, Sin C, Zauber H, Wells JN, Donnelly N, Wang X, Hou J, Chen W, Storchova Z, Marsh JA, Valleriani A, Selbach M.

Cell. 2016 Oct 20;167(3):803-815.e21. doi: 10.1016/j.cell.2016.09.015. Epub 2016 Oct 6.

10.

Quantitative interaction mapping reveals an extended UBX domain in ASPL that disrupts functional p97 hexamers.

Arumughan A, Roske Y, Barth C, Forero LL, Bravo-Rodriguez K, Redel A, Kostova S, McShane E, Opitz R, Faelber K, Rau K, Mielke T, Daumke O, Selbach M, Sanchez-Garcia E, Rocks O, Panáková D, Heinemann U, Wanker EE.

Nat Commun. 2016 Oct 20;7:13047. doi: 10.1038/ncomms13047.

11.

Hypofunctional TrkA Accounts for the Absence of Pain Sensitization in the African Naked Mole-Rat.

Omerbašić D, Smith ES, Moroni M, Homfeld J, Eigenbrod O, Bennett NC, Reznick J, Faulkes CG, Selbach M, Lewin GR.

Cell Rep. 2016 Oct 11;17(3):748-758. doi: 10.1016/j.celrep.2016.09.035.

12.

Bimodal antagonism of PKA signalling by ARHGAP36.

Eccles RL, Czajkowski MT, Barth C, Müller PM, McShane E, Grunwald S, Beaudette P, Mecklenburg N, Volkmer R, Zühlke K, Dittmar G, Selbach M, Hammes A, Daumke O, Klussmann E, Urbé S, Rocks O.

Nat Commun. 2016 Oct 7;7:12963. doi: 10.1038/ncomms12963.

13.

Conservation of miRNA-mediated silencing mechanisms across 600 million years of animal evolution.

Mauri M, Kirchner M, Aharoni R, Ciolli Mattioli C, van den Bruck D, Gutkovitch N, Modepalli V, Selbach M, Moran Y, Chekulaeva M.

Nucleic Acids Res. 2017 Jan 25;45(2):938-950. doi: 10.1093/nar/gkw792. Epub 2016 Sep 6.

14.

Systematic Errors in Peptide and Protein Identification and Quantification by Modified Peptides.

Bogdanow B, Zauber H, Selbach M.

Mol Cell Proteomics. 2016 Aug;15(8):2791-801. doi: 10.1074/mcp.M115.055103. Epub 2016 May 23.

15.

The mRNA-bound proteome of the early fly embryo.

Wessels HH, Imami K, Baltz AG, Kolinski M, Beldovskaya A, Selbach M, Small S, Ohler U, Landthaler M.

Genome Res. 2016 Jul;26(7):1000-9. doi: 10.1101/gr.200386.115. Epub 2016 Apr 28.

16.

In Vivo Interaction Proteomics in Caenorhabditis elegans Embryos Provides New Insights into P Granule Dynamics.

Chen JX, Cipriani PG, Mecenas D, Polanowska J, Piano F, Gunsalus KC, Selbach M.

Mol Cell Proteomics. 2016 May;15(5):1642-57. doi: 10.1074/mcp.M115.053975. Epub 2016 Feb 24.

17.

Detecting actively translated open reading frames in ribosome profiling data.

Calviello L, Mukherjee N, Wyler E, Zauber H, Hirsekorn A, Selbach M, Landthaler M, Obermayer B, Ohler U.

Nat Methods. 2016 Feb;13(2):165-70. doi: 10.1038/nmeth.3688. Epub 2015 Dec 14.

PMID:
26657557
18.

PI3 Kinase and FOXO1 Transcription Factor Activity Differentially Control B Cells in the Germinal Center Light and Dark Zones.

Sander S, Chu VT, Yasuda T, Franklin A, Graf R, Calado DP, Li S, Imami K, Selbach M, Di Virgilio M, Bullinger L, Rajewsky K.

Immunity. 2015 Dec 15;43(6):1075-86. doi: 10.1016/j.immuni.2015.10.021. Epub 2015 Nov 24.

19.

Isolation of Human Colon Stem Cells Using Surface Expression of PTK7.

Jung P, Sommer C, Barriga FM, Buczacki SJ, Hernando-Momblona X, Sevillano M, Duran-Frigola M, Aloy P, Selbach M, Winton DJ, Batlle E.

Stem Cell Reports. 2015 Dec 8;5(6):979-987. doi: 10.1016/j.stemcr.2015.10.003. Epub 2015 Nov 5.

20.

Extensive identification and analysis of conserved small ORFs in animals.

Mackowiak SD, Zauber H, Bielow C, Thiel D, Kutz K, Calviello L, Mastrobuoni G, Rajewsky N, Kempa S, Selbach M, Obermayer B.

Genome Biol. 2015 Sep 14;16:179. doi: 10.1186/s13059-015-0742-x.

21.

Extensive allele-specific translational regulation in hybrid mice.

Hou J, Wang X, McShane E, Zauber H, Sun W, Selbach M, Chen W.

Mol Syst Biol. 2015 Aug 7;11(8):825. doi: 10.15252/msb.156240.

22.

Quantitative affinity purification mass spectrometry: a versatile technology to study protein-protein interactions.

Meyer K, Selbach M.

Front Genet. 2015 Jul 14;6:237. doi: 10.3389/fgene.2015.00237. eCollection 2015. Review.

23.

miR-184 Regulates Pancreatic β-Cell Function According to Glucose Metabolism.

Tattikota SG, Rathjen T, Hausser J, Khedkar A, Kabra UD, Pandey V, Sury M, Wessels HH, Mollet IG, Eliasson L, Selbach M, Zinzen RP, Zavolan M, Kadener S, Tschöp MH, Jastroch M, Friedländer MR, Poy MN.

J Biol Chem. 2015 Aug 14;290(33):20284-94. doi: 10.1074/jbc.M115.658625. Epub 2015 Jul 7.

24.

Novel Paraoxonase 2-Dependent Mechanism Mediating the Biological Effects of the Pseudomonas aeruginosa Quorum-Sensing Molecule N-(3-Oxo-Dodecanoyl)-L-Homoserine Lactone.

Horke S, Xiao J, Schütz EM, Kramer GL, Wilgenbus P, Witte I, Selbach M, Teiber JF.

Infect Immun. 2015 Sep;83(9):3369-80. doi: 10.1128/IAI.00141-15. Epub 2015 Jun 8.

25.

Quantitative interaction proteomics of neurodegenerative disease proteins.

Hosp F, Vossfeldt H, Heinig M, Vasiljevic D, Arumughan A, Wyler E; Genetic and Environmental Risk for Alzheimer’s Disease GERAD1 Consortium, Landthaler M, Hubner N, Wanker EE, Lannfelt L, Ingelsson M, Lalowski M, Voigt A, Selbach M.

Cell Rep. 2015 May 19;11(7):1134-46. doi: 10.1016/j.celrep.2015.04.030. Epub 2015 May 7.

26.

GABA blocks pathological but not acute TRPV1 pain signals.

Hanack C, Moroni M, Lima WC, Wende H, Kirchner M, Adelfinger L, Schrenk-Siemens K, Tappe-Theodor A, Wetzel C, Kuich PH, Gassmann M, Roggenkamp D, Bettler B, Lewin GR, Selbach M, Siemens J.

Cell. 2015 Feb 12;160(4):759-770. doi: 10.1016/j.cell.2015.01.022.

27.

SILAC for biomarker discovery.

Dittmar G, Selbach M.

Proteomics Clin Appl. 2015 Apr;9(3-4):301-6. doi: 10.1002/prca.201400112. Epub 2015 Feb 10.

PMID:
25504673
28.

Drep-2 is a novel synaptic protein important for learning and memory.

Andlauer TF, Scholz-Kornehl S, Tian R, Kirchner M, Babikir HA, Depner H, Loll B, Quentin C, Gupta VK, Holt MG, Dipt S, Cressy M, Wahl MC, Fiala A, Selbach M, Schwärzel M, Sigrist SJ.

Elife. 2014 Nov 13;3. doi: 10.7554/eLife.03895.

29.

Assessment of serum protein dynamics by native SILAC flooding (SILflood).

Nolte H, Hölper S, Selbach M, Braun T, Krüger M.

Anal Chem. 2014 Nov 18;86(22):11033-7. doi: 10.1021/ac502883p. Epub 2014 Nov 6.

PMID:
25347402
31.

In vivo stable isotope labeling by amino acids in Drosophila melanogaster.

Sury MD, Chen JX, Selbach M.

Methods Mol Biol. 2014;1188:85-93. doi: 10.1007/978-1-4939-1142-4_7.

PMID:
25059606
32.

RNA-binding protein RBM20 represses splicing to orchestrate cardiac pre-mRNA processing.

Maatz H, Jens M, Liss M, Schafer S, Heinig M, Kirchner M, Adami E, Rintisch C, Dauksaite V, Radke MH, Selbach M, Barton PJ, Cook SA, Rajewsky N, Gotthardt M, Landthaler M, Hubner N.

J Clin Invest. 2014 Aug;124(8):3419-30. doi: 10.1172/JCI74523. Epub 2014 Jun 24.

33.

Global characterization of the oocyte-to-embryo transition in Caenorhabditis elegans uncovers a novel mRNA clearance mechanism.

Stoeckius M, Grün D, Kirchner M, Ayoub S, Torti F, Piano F, Herzog M, Selbach M, Rajewsky N.

EMBO J. 2014 Aug 18;33(16):1751-66. doi: 10.15252/embj.201488769. Epub 2014 Jun 23.

34.

IPG strip-based peptide fractionation for shotgun proteomics.

Eravci M, Sommer C, Selbach M.

Methods Mol Biol. 2014;1156:67-77. doi: 10.1007/978-1-4939-0685-7_5.

PMID:
24791982
35.

Alteration of protein levels during influenza virus H1N1 infection in host cells: a proteomic survey of host and virus reveals differential dynamics.

Kummer S, Flöttmann M, Schwanhäusser B, Sieben C, Veit M, Selbach M, Klipp E, Herrmann A.

PLoS One. 2014 Apr 9;9(4):e94257. doi: 10.1371/journal.pone.0094257. eCollection 2014.

36.

Quantitative proteomic analysis of gene regulation by miR-34a and miR-34c.

Ebner OA, Selbach M.

PLoS One. 2014 Mar 17;9(3):e92166. doi: 10.1371/journal.pone.0092166. eCollection 2014.

37.

Suicidal autointegration of sleeping beauty and piggyBac transposons in eukaryotic cells.

Wang Y, Wang J, Devaraj A, Singh M, Jimenez Orgaz A, Chen JX, Selbach M, Ivics Z, Izsvák Z.

PLoS Genet. 2014 Mar 13;10(3):e1004103. doi: 10.1371/journal.pgen.1004103. eCollection 2014 Mar.

38.

Activation of MAPK overrides the termination of myelin growth and replaces Nrg1/ErbB3 signals during Schwann cell development and myelination.

Sheean ME, McShane E, Cheret C, Walcher J, Müller T, Wulf-Goldenberg A, Hoelper S, Garratt AN, Krüger M, Rajewsky K, Meijer D, Birchmeier W, Lewin GR, Selbach M, Birchmeier C.

Genes Dev. 2014 Feb 1;28(3):290-303. doi: 10.1101/gad.230045.113.

39.

Gene expression: degrade to derepress.

McShane E, Selbach M.

EMBO J. 2014 Mar 3;33(5):407-8. doi: 10.1002/embj.201387752. Epub 2014 Jan 28.

40.

Conservation of mRNA and protein expression during development of C. elegans.

Grün D, Kirchner M, Thierfelder N, Stoeckius M, Selbach M, Rajewsky N.

Cell Rep. 2014 Feb 13;6(3):565-77. doi: 10.1016/j.celrep.2014.01.001. Epub 2014 Jan 23.

41.

Insm1 controls development of pituitary endocrine cells and requires a SNAG domain for function and for recruitment of histone-modifying factors.

Welcker JE, Hernandez-Miranda LR, Paul FE, Jia S, Ivanov A, Selbach M, Birchmeier C.

Development. 2013 Dec;140(24):4947-58. doi: 10.1242/dev.097642. Epub 2013 Nov 13.

42.

Orchestrated intron retention regulates normal granulocyte differentiation.

Wong JJ, Ritchie W, Ebner OA, Selbach M, Wong JW, Huang Y, Gao D, Pinello N, Gonzalez M, Baidya K, Thoeng A, Khoo TL, Bailey CG, Holst J, Rasko JE.

Cell. 2013 Aug 1;154(3):583-95. doi: 10.1016/j.cell.2013.06.052.

43.

Transpalpebral electrotherapy for dry age-related macular degeneration (AMD): an exploratory trial.

Anastassiou G, Schneegans AL, Selbach M, Kremmer S.

Restor Neurol Neurosci. 2013;31(5):571-8. doi: 10.3233/RNN-130322.

PMID:
23760223
44.

Synthesis and degradation jointly determine the responsiveness of the cellular proteome.

Schwanhäusser B, Wolf J, Selbach M, Busse D.

Bioessays. 2013 Jul;35(7):597-601. doi: 10.1002/bies.201300017. Epub 2013 May 22.

PMID:
23696377
45.

Corrigendum: Global quantification of mammalian gene expression control.

Schwanhäusser B, Busse D, Li N, Dittmar G, Schuchhardt J, Wolf J, Chen W, Selbach M.

Nature. 2013 Mar 7;495(7439):126-7. doi: 10.1038/nature11848. Epub 2013 Feb 13. No abstract available.

PMID:
23407496
46.

Argonaute2 regulates the pancreatic β-cell secretome.

Tattikota SG, Sury MD, Rathjen T, Wessels HH, Pandey AK, You X, Becker C, Chen W, Selbach M, Poy MN.

Mol Cell Proteomics. 2013 May;12(5):1214-25. doi: 10.1074/mcp.M112.024786. Epub 2013 Jan 28.

47.

In vivo conditions to identify Prkci phosphorylation targets using the analog-sensitive kinase method in zebrafish.

Cibrián Uhalte E, Kirchner M, Hellwig N, Allen JJ, Donat S, Shokat KM, Selbach M, Abdelilah-Seyfried S.

PLoS One. 2012;7(6):e40000. doi: 10.1371/journal.pone.0040000. Epub 2012 Jun 29.

48.

The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts.

Baltz AG, Munschauer M, Schwanhäusser B, Vasile A, Murakawa Y, Schueler M, Youngs N, Penfold-Brown D, Drew K, Milek M, Wyler E, Bonneau R, Selbach M, Dieterich C, Landthaler M.

Mol Cell. 2012 Jun 8;46(5):674-90. doi: 10.1016/j.molcel.2012.05.021.

49.

In vivo quantitative proteome profiling: planning and evaluation of SILAC experiments.

Kirchner M, Selbach M.

Methods Mol Biol. 2012;893:175-99. doi: 10.1007/978-1-61779-885-6_13.

PMID:
22665302
50.

Proteomic analysis of mitotic RNA polymerase II reveals novel interactors and association with proteins dysfunctional in disease.

Möller A, Xie SQ, Hosp F, Lang B, Phatnani HP, James S, Ramirez F, Collin GB, Naggert JK, Babu MM, Greenleaf AL, Selbach M, Pombo A.

Mol Cell Proteomics. 2012 Jun;11(6):M111.011767. doi: 10.1074/mcp.M111.011767. Epub 2011 Dec 22.

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