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Items: 1 to 50 of 143

1.

High-throughput genotyping of a full voltage-gated sodium channel gene via genomic DNA using target capture sequencing and analytical pipeline MoNaS to discover novel insecticide resistance mutations.

Itokawa K, Sekizuka T, Maekawa Y, Yatsu K, Komagata O, Sugiura M, Sasaki T, Tomita T, Kuroda M, Sawabe K, Kasai S.

PLoS Negl Trop Dis. 2019 Nov 18;13(11):e0007818. doi: 10.1371/journal.pntd.0007818. eCollection 2019 Nov.

2.

Complete genome and bimodal genomic structure of the amoebal symbiont Neochlamydia strain S13 revealed by ultra-long reads obtained from MinION.

Yamagishi J, Hayashida K, Matsuo J, Okubo T, Kuroda M, Nagai H, Sekizuka T, Yamaguchi H, Sugimoto C.

J Hum Genet. 2020 Jan;65(1):41-48. doi: 10.1038/s10038-019-0684-3. Epub 2019 Nov 14.

PMID:
31723216
3.

Identification of a mecA/mecC-positive MRSA ST1-t127 isolate from a racehorse in Japan.

Sekizuka T, Niwa H, Kinoshita Y, Uchida-Fujii E, Inamine Y, Hashino M, Kuroda M.

J Antimicrob Chemother. 2019 Nov 6. pii: dkz459. doi: 10.1093/jac/dkz459. [Epub ahead of print]

PMID:
31691809
4.

IMP-68, a Novel IMP-Type Metallo-β-Lactamase in Imipenem-Susceptible Klebsiella pneumoniae.

Kubota H, Suzuki Y, Okuno R, Uchitani Y, Ariyoshi T, Takemura N, Mihara F, Mezaki K, Ohmagari N, Matsui M, Suzuki S, Sekizuka T, Kuroda M, Yokoyama K, Sadamasu K.

mSphere. 2019 Oct 30;4(5). pii: e00736-19. doi: 10.1128/mSphere.00736-19.

5.

Epidemiological Aspects of Escherichia albertii Outbreaks in Japan and Genetic Characteristics of the Causative Pathogen.

Masuda K, Ooka T, Akita H, Hiratsuka T, Takao S, Fukada M, Inoue K, Honda M, Toda J, Sugitani W, Narimatsu H, Ishioka T, Hirai S, Sekizuka T, Kuroda M, Morita Y, Hayashi T, Kimura H, Oishi K, Ohnishi M, Fujimoto S, Murakami K.

Foodborne Pathog Dis. 2019 Oct 11. doi: 10.1089/fpd.2019.2654. [Epub ahead of print]

PMID:
31603704
6.

Clade II Candida auris possess genomic structural variations related to an ancestral strain.

Sekizuka T, Iguchi S, Umeyama T, Inamine Y, Makimura K, Kuroda M, Miyazaki Y, Kikuchi K.

PLoS One. 2019 Oct 9;14(10):e0223433. doi: 10.1371/journal.pone.0223433. eCollection 2019.

7.

Complete Genome Sequence of an Enterohemorrhagic Escherichia coli O111:H8 Strain Recovered from a Large Outbreak in Japan Associated with Consumption of Raw Beef.

Sekizuka T, Lee K, Kimata K, Isobe J, Kuroda M, Iyoda S, Ohnishi M, Sata T, Watahiki M.

Microbiol Resour Announc. 2019 Oct 3;8(40). pii: e00882-19. doi: 10.1128/MRA.00882-19.

8.

Aseptic meningitis caused by torque teno virus in an infant: a case report.

Ikuta Y, Oba K, Nai E, Katori T, Hashino M, Inamine Y, Matsunaga S, Yamaoka Y, Sekizuka T, Ryo A, Kuroda M.

J Med Case Rep. 2019 Sep 24;13(1):302. doi: 10.1186/s13256-019-2233-2.

9.

Whole-genome sequencing-based epidemiological analysis of anti-tuberculosis drug resistance genes in Japan in 2007: Application of the Genome Research for Asian Tuberculosis (GReAT) database.

Takii T, Seki K, Wakabayashi Y, Morishige Y, Sekizuka T, Yamashita A, Kato K, Uchimura K, Ohkado A, Keicho N, Mitarai S, Kuroda M, Kato S.

Sci Rep. 2019 Sep 6;9(1):12823. doi: 10.1038/s41598-019-49219-5.

10.

IS256-Mediated Overexpression of the WalKR Two-Component System Regulon Contributes to Reduced Vancomycin Susceptibility in a Staphylococcus aureus Clinical Isolate.

Kuroda M, Sekizuka T, Matsui H, Ohsuga J, Ohshima T, Hanaki H.

Front Microbiol. 2019 Aug 14;10:1882. doi: 10.3389/fmicb.2019.01882. eCollection 2019.

11.

Characterization of NDM-5- and CTX-M-55-coproducing Escherichia coli GSH8M-2 isolated from the effluent of a wastewater treatment plant in Tokyo Bay.

Sekizuka T, Inamine Y, Segawa T, Kuroda M.

Infect Drug Resist. 2019 Jul 23;12:2243-2249. doi: 10.2147/IDR.S215273. eCollection 2019.

12.

The genome sequence of Streptomyces rochei 7434AN4, which carries a linear chromosome and three characteristic linear plasmids.

Nindita Y, Cao Z, Fauzi AA, Teshima A, Misaki Y, Muslimin R, Yang Y, Shiwa Y, Yoshikawa H, Tagami M, Lezhava A, Ishikawa J, Kuroda M, Sekizuka T, Inada K, Kinashi H, Arakawa K.

Sci Rep. 2019 Jul 29;9(1):10973. doi: 10.1038/s41598-019-47406-y.

13.

Enterohaemorrhagic Escherichia coli O121:H19 acquired an extended-spectrum β-lactamase gene during the development of an outbreak in two nurseries.

Kikuchi K, Lee K, Ueno H, Tomari K, Kobori S, Kaetsu A, Matsui M, Suzuki S, Sekizuka T, Kuroda M, Miyazaki M, Ohnishi M.

Microb Genom. 2019 Jul;5(7). doi: 10.1099/mgen.0.000278. Epub 2019 Jun 19.

14.

Salmonella Genomic Island 3 Is an Integrative and Conjugative Element and Contributes to Copper and Arsenic Tolerance of Salmonella enterica.

Arai N, Sekizuka T, Tamamura Y, Kusumoto M, Hinenoya A, Yamasaki S, Iwata T, Watanabe-Yanai A, Kuroda M, Akiba M.

Antimicrob Agents Chemother. 2019 Aug 23;63(9). pii: e00429-19. doi: 10.1128/AAC.00429-19. Print 2019 Sep.

PMID:
31209002
15.

The R2TP complex regulates paramyxovirus RNA synthesis.

Katoh H, Sekizuka T, Nakatsu Y, Nakagawa R, Nao N, Sakata M, Kato F, Kuroda M, Kidokoro M, Takeda M.

PLoS Pathog. 2019 May 23;15(5):e1007749. doi: 10.1371/journal.ppat.1007749. eCollection 2019 May.

16.

A CRISPR Screen Using Subtilase Cytotoxin Identifies SLC39A9 as a Glycan-Regulating Factor.

Yamaji T, Hanamatsu H, Sekizuka T, Kuroda M, Iwasaki N, Ohnishi M, Furukawa JI, Yahiro K, Hanada K.

iScience. 2019 May 31;15:407-420. doi: 10.1016/j.isci.2019.05.005. Epub 2019 May 8.

17.

Potential KPC-2 carbapenemase reservoir of environmental Aeromonas hydrophila and Aeromonas caviae isolates from the effluent of an urban wastewater treatment plant in Japan.

Sekizuka T, Inamine Y, Segawa T, Hashino M, Yatsu K, Kuroda M.

Environ Microbiol Rep. 2019 Aug;11(4):589-597. doi: 10.1111/1758-2229.12772. Epub 2019 May 31.

18.

Overcoming the pitfalls of automatic interpretation of whole genome sequencing data by online tools for the prediction of pyrazinamide resistance in Mycobacterium tuberculosis.

Iwamoto T, Murase Y, Yoshida S, Aono A, Kuroda M, Sekizuka T, Yamashita A, Kato K, Takii T, Arikawa K, Kato S, Mitarai S.

PLoS One. 2019 Feb 28;14(2):e0212798. doi: 10.1371/journal.pone.0212798. eCollection 2019.

19.

A CRISPR Screen Identifies LAPTM4A and TM9SF Proteins as Glycolipid-Regulating Factors.

Yamaji T, Sekizuka T, Tachida Y, Sakuma C, Morimoto K, Kuroda M, Hanada K.

iScience. 2019 Jan 25;11:409-424. doi: 10.1016/j.isci.2018.12.039. Epub 2019 Jan 3.

20.

Complete Genome Sequence of bla IMP-6-Positive Metakosakonia sp. MRY16-398 Isolate From the Ascites of a Diverticulitis Patient.

Sekizuka T, Matsui M, Takahashi T, Hayashi M, Suzuki S, Tokaji A, Kuroda M.

Front Microbiol. 2018 Nov 22;9:2853. doi: 10.3389/fmicb.2018.02853. eCollection 2018.

21.
22.

Complete Genome Sequence and Characterization of Linezolid-Resistant Enterococcus faecalis Clinical Isolate KUB3006 Carrying a cfr(B)-Transposon on Its Chromosome and optrA-Plasmid.

Kuroda M, Sekizuka T, Matsui H, Suzuki K, Seki H, Saito M, Hanaki H.

Front Microbiol. 2018 Oct 25;9:2576. doi: 10.3389/fmicb.2018.02576. eCollection 2018.

23.

Complete Genome Sequence of a blaKPC-2-Positive Klebsiella pneumoniae Strain Isolated from the Effluent of an Urban Sewage Treatment Plant in Japan.

Sekizuka T, Yatsu K, Inamine Y, Segawa T, Nishio M, Kishi N, Kuroda M.

mSphere. 2018 Sep 19;3(5). pii: e00314-18. doi: 10.1128/mSphere.00314-18.

24.

Conventional culture methods with commercially available media unveil the presence of novel culturable bacteria.

Ito T, Sekizuka T, Kishi N, Yamashita A, Kuroda M.

Gut Microbes. 2019;10(1):77-91. doi: 10.1080/19490976.2018.1491265. Epub 2018 Aug 17.

25.

Next-generation DNA sequencing analysis of two Streptococcus suis ST28 isolates associated with human infective endocarditis and meningitis in Gunma, Japan: a case report.

Hayashi T, Tsukagoshi H, Sekizuka T, Ishikawa D, Imai M, Fujita M, Kuroda M, Saruki N.

Infect Dis (Lond). 2019 Jan;51(1):62-66. doi: 10.1080/23744235.2018.1490813. Epub 2018 Aug 15.

PMID:
30111218
26.

FRI-4 carbapenemase-producing Enterobacter cloacae complex isolated in Tokyo, Japan.

Kubota H, Uwamino Y, Matsui M, Sekizuka T, Suzuki Y, Okuno R, Uchitani Y, Ariyoshi T, Aoki W, Suzuki S, Kuroda M, Shinkai T, Yokoyama K, Sadamasu K, Funakoshi T, Murata M, Hasegawa N, Iwata S.

J Antimicrob Chemother. 2018 Nov 1;73(11):2969-2972. doi: 10.1093/jac/dky291.

PMID:
30060114
27.

Infection of Epstein⁻Barr Virus in Type III Latency Modulates Biogenesis of Exosomes and the Expression Profile of Exosomal miRNAs in the Burkitt Lymphoma Mutu Cell Lines.

Nanbo A, Katano H, Kataoka M, Hoshina S, Sekizuka T, Kuroda M, Ohba Y.

Cancers (Basel). 2018 Jul 19;10(7). pii: E237. doi: 10.3390/cancers10070237.

28.

Prevention of aerosol isolation of nontuberculous mycobacterium from the patient's bathroom.

Morimoto K, Aono A, Murase Y, Sekizuka T, Kurashima A, Takaki A, Sasaki Y, Igarashi Y, Chikamatsu K, Goto H, Yamada H, Kuroda M, Mitarai S.

ERJ Open Res. 2018 Jul 3;4(3). pii: 00150-2017. doi: 10.1183/23120541.00150-2017. eCollection 2018 Jul.

29.

Comprehensive phylogenomic analysis reveals a novel cluster of simian endogenous retroviral sequences in Colobinae monkeys.

Ikeda M, Satomura K, Sekizuka T, Hanada K, Endo T, Osada N.

Am J Primatol. 2018 Jul;80(7):e22882. doi: 10.1002/ajp.22882. Epub 2018 Jun 12.

30.

Erratum: AIG1 affects in vitro and in vivo virulence in clinical isolates of Entamoeba histolytica.

Nakada-Tsukui K, Sekizuka T, Sato-Ebine E, Escueta-de Cadiz A, Ji DD, Tomii K, Kuroda M, Nozaki T.

PLoS Pathog. 2018 May 31;14(5):e1007091. doi: 10.1371/journal.ppat.1007091. eCollection 2018 May. Erratum in: PLoS Pathog. 2018 Aug 17;14(8):e1007258.

31.

Decrease in the prevalence of extended-spectrum cephalosporin-resistant Salmonella following cessation of ceftiofur use by the Japanese poultry industry.

Shigemura H, Matsui M, Sekizuka T, Onozuka D, Noda T, Yamashita A, Kuroda M, Suzuki S, Kimura H, Fujimoto S, Oishi K, Sera N, Inoshima Y, Murakami K.

Int J Food Microbiol. 2018 Jun 2;274:45-51. doi: 10.1016/j.ijfoodmicro.2018.03.011. Epub 2018 Mar 17.

PMID:
29626788
32.

AIG1 affects in vitro and in vivo virulence in clinical isolates of Entamoeba histolytica.

Nakada-Tsukui K, Sekizuka T, Sato-Ebine E, Escueta-de Cadiz A, Ji DD, Tomii K, Kuroda M, Nozaki T.

PLoS Pathog. 2018 Mar 19;14(3):e1006882. doi: 10.1371/journal.ppat.1006882. eCollection 2018 Mar. Erratum in: PLoS Pathog. 2018 May 31;14 (5):e1007091.

33.

Phylogenetic Characterization of Salmonella enterica Serovar Typhimurium and Its Monophasic Variant Isolated from Food Animals in Japan Revealed Replacement of Major Epidemic Clones in the Last 4 Decades.

Arai N, Sekizuka T, Tamamura Y, Tanaka K, Barco L, Izumiya H, Kusumoto M, Hinenoya A, Yamasaki S, Iwata T, Watanabe A, Kuroda M, Uchida I, Akiba M.

J Clin Microbiol. 2018 Apr 25;56(5). pii: e01758-17. doi: 10.1128/JCM.01758-17. Print 2018 May.

34.

Genetic Analysis of Human Norovirus Strains in Japan in 2016-2017.

Nagasawa K, Matsushima Y, Motoya T, Mizukoshi F, Ueki Y, Sakon N, Murakami K, Shimizu T, Okabe N, Nagata N, Shirabe K, Shinomiya H, Suzuki W, Kuroda M, Sekizuka T, Suzuki Y, Ryo A, Fujita K, Oishi K, Katayama K, Kimura H.

Front Microbiol. 2018 Jan 18;9:1. doi: 10.3389/fmicb.2018.00001. eCollection 2018.

35.

A summary of the imported cases of Chikungunya fever in Japan from 2006 to June 2016.

Nakayama E, Tajima S, Kotaki A, Shibasaki KI, Itokawa K, Kato K, Yamashita A, Sekizuka T, Kuroda M, Tomita T, Saijo M, Takasaki T.

J Travel Med. 2018 Jan 1;25(1). doi: 10.1093/jtm/tax072.

PMID:
29394382
36.

Novel endogenous simian retroviral integrations in Vero cells: implications for quality control of a human vaccine cell substrate.

Sakuma C, Sekizuka T, Kuroda M, Kasai F, Saito K, Ikeda M, Yamaji T, Osada N, Hanada K.

Sci Rep. 2018 Jan 12;8(1):644. doi: 10.1038/s41598-017-18934-2.

37.

Isolation and Complete Genome Sequencing of Zika Virus Imported from the Dominican Republic to Japan.

Ozawa H, Tajima S, Nakayama E, Kato K, Yamashita A, Sekizuka T, Kuroda M, Usuku S.

Jpn J Infect Dis. 2018 Jan 23;71(1):72-74. doi: 10.7883/yoken.JJID.2017.256. Epub 2017 Dec 26.

38.

Phylogeny and Immunoreactivity of Norovirus GII.P16-GII.2, Japan, Winter 2016-17.

Nagasawa K, Matsushima Y, Motoya T, Mizukoshi F, Ueki Y, Sakon N, Murakami K, Shimizu T, Okabe N, Nagata N, Shirabe K, Shinomiya H, Suzuki W, Kuroda M, Sekizuka T, Ryo A, Fujita K, Oishi K, Katayama K, Kimura H.

Emerg Infect Dis. 2018 Jan;24(1):144-148. doi: 10.3201/eid2401.170284.

39.

Molecular Evolution of the VP1 Gene in Human Norovirus GII.4 Variants in 1974-2015.

Motoya T, Nagasawa K, Matsushima Y, Nagata N, Ryo A, Sekizuka T, Yamashita A, Kuroda M, Morita Y, Suzuki Y, Sasaki N, Katayama K, Kimura H.

Front Microbiol. 2017 Dec 5;8:2399. doi: 10.3389/fmicb.2017.02399. eCollection 2017.

40.

Streptococcal toxic shock syndrome caused by the dissemination of an invasive emm3/ST15 strain of Streptococcus pyogenes.

Sekizuka T, Nai E, Yoshida T, Endo S, Hamajima E, Akiyama S, Ikuta Y, Obana N, Kawaguchi T, Hayashi K, Noda M, Sumita T, Kokaji M, Katori T, Hashino M, Oba K, Kuroda M.

BMC Infect Dis. 2017 Dec 18;17(1):774. doi: 10.1186/s12879-017-2870-2.

41.

Characterization of Fusobacterium varium Fv113-g1 isolated from a patient with ulcerative colitis based on complete genome sequence and transcriptome analysis.

Sekizuka T, Ogasawara Y, Ohkusa T, Kuroda M.

PLoS One. 2017 Dec 7;12(12):e0189319. doi: 10.1371/journal.pone.0189319. eCollection 2017.

42.

Rapid and affordable size-selected PacBio single-molecule real-time sequencing template library construction using the bead-beating DNA extraction method.

Kato K, Hashino M, Ito T, Matsui M, Suzuki S, Kai K, Kitazume M, Sekizuka T, Kuroda M.

J Biol Methods. 2017 Sep 13;4(3):e79. doi: 10.14440/jbm.2017.169. eCollection 2017.

43.

Interleukin-6-dependent growth in a newly established plasmablastic lymphoma cell line and its therapeutic targets.

Mine S, Hishima T, Suganuma A, Fukumoto H, Sato Y, Kataoka M, Sekizuka T, Kuroda M, Suzuki T, Hasegawa H, Fukayama M, Katano H.

Sci Rep. 2017 Aug 31;7(1):10188. doi: 10.1038/s41598-017-10684-5.

44.

Analysis of multidrug resistant group B streptococci with reduced penicillin susceptibility forming small, less hemolytic colonies.

Banno H, Kimura K, Tanaka Y, Sekizuka T, Kuroda M, Jin W, Wachino JI, Yamada K, Shibayama K, Arakawa Y.

PLoS One. 2017 Aug 17;12(8):e0183453. doi: 10.1371/journal.pone.0183453. eCollection 2017.

45.

Proviral Features of Human T Cell Leukemia Virus Type 1 in Carriers with Indeterminate Western Blot Analysis Results.

Kuramitsu M, Sekizuka T, Yamochi T, Firouzi S, Sato T, Umeki K, Sasaki D, Hasegawa H, Kubota R, Sobata R, Matsumoto C, Kaneko N, Momose H, Araki K, Saito M, Nosaka K, Utsunomiya A, Koh KR, Ogata M, Uchimaru K, Iwanaga M, Sagara Y, Yamano Y, Okayama A, Miura K, Satake M, Saito S, Itabashi K, Yamaguchi K, Kuroda M, Watanabe T, Okuma K, Hamaguchi I.

J Clin Microbiol. 2017 Sep;55(9):2838-2849. doi: 10.1128/JCM.00659-17. Epub 2017 Jul 12.

46.

Complete Genome Sequences of the p1 Gene Type 2b and 2c Strains Mycoplasma pneumoniae KCH-402 and KCH-405.

Kenri T, Suzuki M, Horino A, Sekizuka T, Kuroda M, Fujii H, Hashimoto T, Nakajima H, Ohya H, Shibayama K.

Genome Announc. 2017 Jun 15;5(24). pii: e00513-17. doi: 10.1128/genomeA.00513-17.

47.

A Geographically Widespread Outbreak Investigation and Development of a Rapid Screening Method Using Whole Genome Sequences of Enterohemorrhagic Escherichia coli O121.

Lee KI, Morita-Ishihara T, Iyoda S, Ogura Y, Hayashi T, Sekizuka T, Kuroda M, Ohnishi M; EHEC Working Group in Japan.

Front Microbiol. 2017 Apr 20;8:701. doi: 10.3389/fmicb.2017.00701. eCollection 2017.

48.

Comprehensive Diagnosis of Bacterial Infection Associated with Acute Cholecystitis Using Metagenomic Approach.

Kujiraoka M, Kuroda M, Asai K, Sekizuka T, Kato K, Watanabe M, Matsukiyo H, Saito T, Ishii T, Katada N, Saida Y, Kusachi S.

Front Microbiol. 2017 Apr 20;8:685. doi: 10.3389/fmicb.2017.00685. eCollection 2017.

49.

Elucidation of quantitative structural diversity of remarkable rearrangement regions, shufflons, in IncI2 plasmids.

Sekizuka T, Kawanishi M, Ohnishi M, Shima A, Kato K, Yamashita A, Matsui M, Suzuki S, Kuroda M.

Sci Rep. 2017 Apr 19;7(1):928. doi: 10.1038/s41598-017-01082-y.

50.

Comprehensive pathogen detection associated with four recurrent episodes of Kawasaki disease in a patient during a single year using next-generation sequencing.

Hamada H, Sekizuka T, Oba K, Katano H, Kinumaki A, Terai M, Mizutani T, Kuroda M.

JMM Case Rep. 2016 Feb 1;3(1):e005019. doi: 10.1099/jmmcr.0.005019. eCollection 2016 Feb.

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