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Items: 24

1.

Characterization of natural genetic variation identifies multiple genes involved in salt tolerance in maize.

Sandhu D, Pudussery MV, Kumar R, Pallete A, Markley P, Bridges WC, Sekhon RS.

Funct Integr Genomics. 2019 Sep 14. doi: 10.1007/s10142-019-00707-x. [Epub ahead of print]

PMID:
31522293
2.

Genome-wide identification, expression profiling, and network analysis of AT-hook gene family in maize.

Bishop EH, Kumar R, Luo F, Saski C, Sekhon RS.

Genomics. 2019 Jul 16. pii: S0888-7543(19)30294-0. doi: 10.1016/j.ygeno.2019.07.009. [Epub ahead of print]

PMID:
31323298
3.

Integrated Genome-Scale Analysis Identifies Novel Genes and Networks Underlying Senescence in Maize.

Sekhon RS, Saski C, Kumar R, Flinn BS, Luo F, Beissinger TM, Ackerman AJ, Breitzman MW, Bridges WC, de Leon N, Kaeppler SM.

Plant Cell. 2019 Sep;31(9):1968-1989. doi: 10.1105/tpc.18.00930. Epub 2019 Jun 25.

4.

Sugar partitioning and source-sink interaction are key determinants of leaf senescence in maize.

Kumar R, Bishop E, Bridges WC, Tharayil N, Sekhon RS.

Plant Cell Environ. 2019 Sep;42(9):2597-2611. doi: 10.1111/pce.13599. Epub 2019 Jul 17.

PMID:
31158300
5.

Molecular characterization and expression analysis of the Na+/H+ exchanger gene family in Medicago truncatula.

Sandhu D, Pudussery MV, Kaundal R, Suarez DL, Kaundal A, Sekhon RS.

Funct Integr Genomics. 2018 Mar;18(2):141-153. doi: 10.1007/s10142-017-0581-9. Epub 2017 Dec 26.

PMID:
29280022
6.

Suppression of CINNAMOYL-CoA REDUCTASE increases the level of monolignol ferulates incorporated into maize lignins.

Smith RA, Cass CL, Mazaheri M, Sekhon RS, Heckwolf M, Kaeppler H, de Leon N, Mansfield SD, Kaeppler SM, Sedbrook JC, Karlen SD, Ralph J.

Biotechnol Biofuels. 2017 May 2;10:109. doi: 10.1186/s13068-017-0793-1. eCollection 2017.

7.

An Expanded Maize Gene Expression Atlas based on RNA Sequencing and its Use to Explore Root Development.

Stelpflug SC, Sekhon RS, Vaillancourt B, Hirsch CN, Buell CR, de Leon N, Kaeppler SM.

Plant Genome. 2016 Mar;9(1). doi: 10.3835/plantgenome2015.04.0025.

8.

Stover Composition in Maize and Sorghum Reveals Remarkable Genetic Variation and Plasticity for Carbohydrate Accumulation.

Sekhon RS, Breitzman MW, Silva RR, Santoro N, Rooney WL, de Leon N, Kaeppler SM.

Front Plant Sci. 2016 Jun 8;7:822. doi: 10.3389/fpls.2016.00822. eCollection 2016.

9.

Evidence for maternal control of seed size in maize from phenotypic and transcriptional analysis.

Zhang X, Hirsch CN, Sekhon RS, de Leon N, Kaeppler SM.

J Exp Bot. 2016 Mar;67(6):1907-17. doi: 10.1093/jxb/erw006. Epub 2016 Jan 29.

10.

Phenotypic and Transcriptional Analysis of Divergently Selected Maize Populations Reveals the Role of Developmental Timing in Seed Size Determination.

Sekhon RS, Hirsch CN, Childs KL, Breitzman MW, Kell P, Duvick S, Spalding EP, Buell CR, de Leon N, Kaeppler SM.

Plant Physiol. 2014 Jun;165(2):658-669. Epub 2014 Apr 7.

11.

Insights into the maize pan-genome and pan-transcriptome.

Hirsch CN, Foerster JM, Johnson JM, Sekhon RS, Muttoni G, Vaillancourt B, Peñagaricano F, Lindquist E, Pedraza MA, Barry K, de Leon N, Kaeppler SM, Buell CR.

Plant Cell. 2014 Jan;26(1):121-35. doi: 10.1105/tpc.113.119982. Epub 2014 Jan 31.

12.

Comparative proteomics analysis by DIGE and iTRAQ provides insight into the regulation of phenylpropanoids in maize.

Robbins ML, Roy A, Wang PH, Gaffoor I, Sekhon RS, de O Buanafina MM, Rohila JS, Chopra S.

J Proteomics. 2013 Nov 20;93:254-75. doi: 10.1016/j.jprot.2013.06.018. Epub 2013 Jun 27.

PMID:
23811284
13.

Maize gene atlas developed by RNA sequencing and comparative evaluation of transcriptomes based on RNA sequencing and microarrays.

Sekhon RS, Briskine R, Hirsch CN, Myers CL, Springer NM, Buell CR, de Leon N, Kaeppler SM.

PLoS One. 2013 Apr 23;8(4):e61005. doi: 10.1371/journal.pone.0061005. Print 2013. Erratum in: PLoS One. 2014;9(1). doi:10.1371/annotation/0444d495-9231-4097-abe0-4750b9045971.

14.

Marker density and read depth for genotyping populations using genotyping-by-sequencing.

Beissinger TM, Hirsch CN, Sekhon RS, Foerster JM, Johnson JM, Muttoni G, Vaillancourt B, Buell CR, Kaeppler SM, de Leon N.

Genetics. 2013 Apr;193(4):1073-81. doi: 10.1534/genetics.112.147710. Epub 2013 Feb 14.

15.

Maize Unstable factor for orange1 is required for maintaining silencing associated with paramutation at the pericarp color1 and booster1 loci.

Sekhon RS, Wang PH, Sidorenko L, Chandler VL, Chopra S.

PLoS Genet. 2012;8(10):e1002980. doi: 10.1371/journal.pgen.1002980. Epub 2012 Oct 4.

16.

Transcriptional and metabolic analysis of senescence induced by preventing pollination in maize.

Sekhon RS, Childs KL, Santoro N, Foster CE, Buell CR, de Leon N, Kaeppler SM.

Plant Physiol. 2012 Aug;159(4):1730-44. doi: 10.1104/pp.112.199224. Epub 2012 Jun 25.

17.

Maize HapMap2 identifies extant variation from a genome in flux.

Chia JM, Song C, Bradbury PJ, Costich D, de Leon N, Doebley J, Elshire RJ, Gaut B, Geller L, Glaubitz JC, Gore M, Guill KE, Holland J, Hufford MB, Lai J, Li M, Liu X, Lu Y, McCombie R, Nelson R, Poland J, Prasanna BM, Pyhäjärvi T, Rong T, Sekhon RS, Sun Q, Tenaillon MI, Tian F, Wang J, Xu X, Zhang Z, Kaeppler SM, Ross-Ibarra J, McMullen MD, Buckler ES, Zhang G, Xu Y, Ware D.

Nat Genet. 2012 Jun 3;44(7):803-7. doi: 10.1038/ng.2313.

PMID:
22660545
18.

Maize (Zea mays L.) genome diversity as revealed by RNA-sequencing.

Hansey CN, Vaillancourt B, Sekhon RS, de Leon N, Kaeppler SM, Buell CR.

PLoS One. 2012;7(3):e33071. doi: 10.1371/journal.pone.0033071. Epub 2012 Mar 16.

19.

Genome-wide atlas of transcription during maize development.

Sekhon RS, Lin H, Childs KL, Hansey CN, Buell CR, de Leon N, Kaeppler SM.

Plant J. 2011 May;66(4):553-63. doi: 10.1111/j.1365-313X.2011.04527.x. Epub 2011 Mar 9.

20.

Tissue culture-induced novel epialleles of a Myb transcription factor encoded by pericarp color1 in maize.

Rhee Y, Sekhon RS, Chopra S, Kaeppler S.

Genetics. 2010 Nov;186(3):843-55. doi: 10.1534/genetics.110.117929. Epub 2010 Sep 7.

21.

Gene structure induced epigenetic modifications of pericarp color1 alleles of maize result in tissue-specific mosaicism.

Robbins ML, Wang P, Sekhon RS, Chopra S.

PLoS One. 2009 Dec 14;4(12):e8231. doi: 10.1371/journal.pone.0008231.

22.

Progressive loss of DNA methylation releases epigenetic gene silencing from a tandemly repeated maize Myb gene.

Sekhon RS, Chopra S.

Genetics. 2009 Jan;181(1):81-91. doi: 10.1534/genetics.108.097170. Epub 2008 Nov 10.

23.

A Mutator transposon insertion is associated with ectopic expression of a tandemly repeated multicopy Myb gene pericarp color1 of maize.

Robbins ML, Sekhon RS, Meeley R, Chopra S.

Genetics. 2008 Apr;178(4):1859-74. doi: 10.1534/genetics.107.082503.

24.

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