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Items: 5

1.

A blueprint for human whole-cell modeling.

Szigeti B, Roth YD, Sekar JAP, Goldberg AP, Pochiraju SC, Karr JR.

Curr Opin Syst Biol. 2018 Feb;7:8-15. doi: 10.1016/j.coisb.2017.10.005. Epub 2017 Nov 9.

2.

Emerging whole-cell modeling principles and methods.

Goldberg AP, Szigeti B, Chew YH, Sekar JA, Roth YD, Karr JR.

Curr Opin Biotechnol. 2018 Jun;51:97-102. doi: 10.1016/j.copbio.2017.12.013. Epub 2017 Dec 21. Review.

3.

Automated visualization of rule-based models.

Sekar JAP, Tapia JJ, Faeder JR.

PLoS Comput Biol. 2017 Nov 13;13(11):e1005857. doi: 10.1371/journal.pcbi.1005857. eCollection 2017 Nov.

4.

BioNetGen 2.2: advances in rule-based modeling.

Harris LA, Hogg JS, Tapia JJ, Sekar JA, Gupta S, Korsunsky I, Arora A, Barua D, Sheehan RP, Faeder JR.

Bioinformatics. 2016 Nov 1;32(21):3366-3368. Epub 2016 Jul 8.

5.

Rule-based modeling of signal transduction: a primer.

Sekar JA, Faeder JR.

Methods Mol Biol. 2012;880:139-218. doi: 10.1007/978-1-61779-833-7_9. Review.

PMID:
23361986

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