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The prophet who foretold our future.

Sejnowski T.

Brain. 2018 Sep 1;141(9):2820-2822. doi: 10.1093/brain/awy212. No abstract available.


Geometric principles of second messenger dynamics in dendritic spines.

Cugno A, Bartol TM, Sejnowski TJ, Iyengar R, Rangamani P.

Sci Rep. 2019 Aug 12;9(1):11676. doi: 10.1038/s41598-019-48028-0.


Addendum: Dendritic spine geometry and spine apparatus organization govern the spatiotemporal dynamics of calcium.

Bell M, Bartol T, Sejnowski T, Rangamani P.

J Gen Physiol. 2019 Aug 2. pii: jgp.20181226107312019a. doi: 10.1085/jgp.20181226107312019a. [Epub ahead of print] No abstract available.


Impairments in remote memory caused by the lack of Type 2 IP3 receptors.

Pinto-Duarte A, Roberts AJ, Ouyang K, Sejnowski TJ.

Glia. 2019 Oct;67(10):1976-1989. doi: 10.1002/glia.23679. Epub 2019 Jul 26.


Learning moment closure in reaction-diffusion systems with spatial dynamic Boltzmann distributions.

Ernst OK, Bartol TM, Sejnowski TJ, Mjolsness E.

Phys Rev E. 2019 Jun;99(6-1):063315. doi: 10.1103/PhysRevE.99.063315.


Dendritic spine geometry and spine apparatus organization govern the spatiotemporal dynamics of calcium.

Bell M, Bartol T, Sejnowski T, Rangamani P.

J Gen Physiol. 2019 Aug 5;151(8):1017-1034. doi: 10.1085/jgp.201812261. Epub 2019 Jul 19. Erratum in: J Gen Physiol. 2019 Aug 2;:.


Feedforward thalamocortical connectivity preserves stimulus timing information in sensory pathways.

Wang HP, Garcia JW, Sabottke CF, Spencer D, Sejnowski TJ.

J Neurosci. 2019 Jul 3. pii: 3165-17. doi: 10.1523/JNEUROSCI.3165-17.2019. [Epub ahead of print]


What we learned from creating one of the world's most popular MOOCs.

Oakley BA, Sejnowski TJ.

NPJ Sci Learn. 2019 Jun 14;4:7. doi: 10.1038/s41539-019-0046-0. eCollection 2019. Review.


Robust single-cell Hi-C clustering by convolution- and random-walk-based imputation.

Zhou J, Ma J, Chen Y, Cheng C, Bao B, Peng J, Sejnowski TJ, Dixon JR, Ecker JR.

Proc Natl Acad Sci U S A. 2019 Jul 9;116(28):14011-14018. doi: 10.1073/pnas.1901423116. Epub 2019 Jun 24.


Characterizing Brain Connectivity From Human Electrocorticography Recordings With Unobserved Inputs During Epileptic Seizures.

Das A, Sexton D, Lainscsek C, Cash SS, Sejnowski TJ.

Neural Comput. 2019 Jul;31(7):1271-1326. doi: 10.1162/neco_a_01205. Epub 2019 May 21.


MCell-R: A Particle-Resolution Network-Free Spatial Modeling Framework.

Tapia JJ, Saglam AS, Czech J, Kuczewski R, Bartol TM, Sejnowski TJ, Faeder JR.

Methods Mol Biol. 2019;1945:203-229. doi: 10.1007/978-1-4939-9102-0_9.


Nonlinear dynamics underlying sensory processing dysfunction in schizophrenia.

Lainscsek C, Sampson AL, Kim R, Thomas ML, Man K, Lainscsek X; COGS Investigators, Swerdlow NR, Braff DL, Sejnowski TJ, Light GA.

Proc Natl Acad Sci U S A. 2019 Feb 26;116(9):3847-3852. doi: 10.1073/pnas.1810572116. Epub 2019 Feb 11.


Fast near-whole-brain imaging in adult Drosophila during responses to stimuli and behavior.

Aimon S, Katsuki T, Jia T, Grosenick L, Broxton M, Deisseroth K, Sejnowski TJ, Greenspan RJ.

PLoS Biol. 2019 Feb 15;17(2):e2006732. doi: 10.1371/journal.pbio.2006732. eCollection 2019 Feb.


Delay differential analysis for dynamical sleep spindle detection.

Sampson AL, Lainscsek C, Gonzalez CE, Ulbert I, Devinsky O, Fabó D, Madsen JR, Halgren E, Cash SS, Sejnowski TJ.

J Neurosci Methods. 2019 Mar 15;316:12-21. doi: 10.1016/j.jneumeth.2019.01.009. Epub 2019 Jan 30.


Centrifugal Inputs to the Main Olfactory Bulb Revealed Through Whole Brain Circuit-Mapping.

Padmanabhan K, Osakada F, Tarabrina A, Kizer E, Callaway EM, Gage FH, Sejnowski TJ.

Front Neuroanat. 2019 Jan 7;12:115. doi: 10.3389/fnana.2018.00115. eCollection 2018.


Multi-modal Approach for Affective Computing.

Siddharth, Jung TP, Sejnowski TJ.

Conf Proc IEEE Eng Med Biol Soc. 2018 Jul;2018:291-294. doi: 10.1109/EMBC.2018.8512320.


Simulating human sleep spindle MEG and EEG from ion channel and circuit level dynamics.

Rosen BQ, Krishnan GP, Sanda P, Komarov M, Sejnowski T, Rulkov N, Ulbert I, Eross L, Madsen J, Devinsky O, Doyle W, Fabo D, Cash S, Bazhenov M, Halgren E.

J Neurosci Methods. 2019 Mar 15;316:46-57. doi: 10.1016/j.jneumeth.2018.10.002. Epub 2018 Oct 6.


Glider soaring via reinforcement learning in the field.

Reddy G, Wong-Ng J, Celani A, Sejnowski TJ, Vergassola M.

Nature. 2018 Oct;562(7726):236-239. doi: 10.1038/s41586-018-0533-0. Epub 2018 Sep 19.


A Wearable Multi-Modal Bio-Sensing System Towards Real-World Applications.

Siddharth, Patel AN, Jung TP, Sejnowski TJ.

IEEE Trans Biomed Eng. 2019 Apr;66(4):1137-1147. doi: 10.1109/TBME.2018.2868759. Epub 2018 Sep 4.


Pre-post synaptic alignment through neuroligin-1 tunes synaptic transmission efficiency.

Haas KT, Compans B, Letellier M, Bartol TM, Grillo-Bosch D, Sejnowski TJ, Sainlos M, Choquet D, Thoumine O, Hosy E.

Elife. 2018 Jul 25;7. pii: e31755. doi: 10.7554/eLife.31755.


Learning dynamic Boltzmann distributions as reduced models of spatial chemical kinetics.

Ernst OK, Bartol T, Sejnowski T, Mjolsness E.

J Chem Phys. 2018 Jul 21;149(3):034107. doi: 10.1063/1.5026403.


Thalamocortical and intracortical laminar connectivity determines sleep spindle properties.

Krishnan GP, Rosen BQ, Chen JY, Muller L, Sejnowski TJ, Cash SS, Halgren E, Bazhenov M.

PLoS Comput Biol. 2018 Jun 27;14(6):e1006171. doi: 10.1371/journal.pcbi.1006171. eCollection 2018 Jun.


Structured networks support sparse traveling waves in rodent somatosensory cortex.

Moldakarimov S, Bazhenov M, Feldman DE, Sejnowski TJ.

Proc Natl Acad Sci U S A. 2018 May 15;115(20):5277-5282. doi: 10.1073/pnas.1710202115. Epub 2018 Apr 30.


Efficient models of polymerization applied to FtsZ ring assembly in Escherichia coli.

Ruiz-Martínez Á, Bartol TM, Sejnowski TJ, Tartakovsky DM.

Proc Natl Acad Sci U S A. 2018 May 8;115(19):4933-4938. doi: 10.1073/pnas.1719391115. Epub 2018 Apr 23.


Cortical travelling waves: mechanisms and computational principles.

Muller L, Chavane F, Reynolds J, Sejnowski TJ.

Nat Rev Neurosci. 2018 May;19(5):255-268. doi: 10.1038/nrn.2018.20. Epub 2018 Mar 22. Review.


Ketamine independently modulated power and phase-coupling of theta oscillations in Sp4 hypomorphic mice.

Wang X, Pinto-Duarte A, Behrens MM, Zhou X, Sejnowski TJ.

PLoS One. 2018 Mar 7;13(3):e0193446. doi: 10.1371/journal.pone.0193446. eCollection 2018.


Long-term potentiation expands information content of hippocampal dentate gyrus synapses.

Bromer C, Bartol TM, Bowden JB, Hubbard DD, Hanka DC, Gonzalez PV, Kuwajima M, Mendenhall JM, Parker PH, Abraham WC, Sejnowski TJ, Harris KM.

Proc Natl Acad Sci U S A. 2018 Mar 6;115(10):E2410-E2418. doi: 10.1073/pnas.1716189115. Epub 2018 Feb 20.


Heterogeneities in Axonal Structure and Transporter Distribution Lower Dopamine Reuptake Efficiency.

Kaya C, Cheng MH, Block ER, Bartol TM, Sejnowski TJ, Sorkin A, Faeder JR, Bahar I.

eNeuro. 2018 Feb 5;5(1). pii: ENEURO.0298-17.2017. doi: 10.1523/ENEURO.0298-17.2017. eCollection 2018 Jan-Feb.


Brain-state dependent astrocytic Ca2+ signals are coupled to both positive and negative BOLD-fMRI signals.

Wang M, He Y, Sejnowski TJ, Yu X.

Proc Natl Acad Sci U S A. 2018 Feb 13;115(7):E1647-E1656. doi: 10.1073/pnas.1711692115. Epub 2018 Jan 30.


The Effects of Audiovisual Inputs on Solving the Cocktail Party Problem in the Human Brain: An fMRI Study.

Li Y, Wang F, Chen Y, Cichocki A, Sejnowski T.

Cereb Cortex. 2018 Oct 1;28(10):3623-3637. doi: 10.1093/cercor/bhx235.


Beyond excitation/inhibition imbalance in multidimensional models of neural circuit changes in brain disorders.

O'Donnell C, Gonçalves JT, Portera-Cailliau C, Sejnowski TJ.

Elife. 2017 Oct 11;6. pii: e26724. doi: 10.7554/eLife.26724.


Interstitial solute transport in 3D reconstructed neuropil occurs by diffusion rather than bulk flow.

Holter KE, Kehlet B, Devor A, Sejnowski TJ, Dale AM, Omholt SW, Ottersen OP, Nagelhus EA, Mardal KA, Pettersen KH.

Proc Natl Acad Sci U S A. 2017 Sep 12;114(37):9894-9899. doi: 10.1073/pnas.1706942114. Epub 2017 Aug 28.


Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex.

Luo C, Keown CL, Kurihara L, Zhou J, He Y, Li J, Castanon R, Lucero J, Nery JR, Sandoval JP, Bui B, Sejnowski TJ, Harkins TT, Mukamel EA, Behrens MM, Ecker JR.

Science. 2017 Aug 11;357(6351):600-604. doi: 10.1126/science.aan3351.


Delay Differential Analysis of Seizures in Multichannel Electrocorticography Data.

Lainscsek C, Weyhenmeyer J, Cash SS, Sejnowski TJ.

Neural Comput. 2017 Dec;29(12):3181-3218. doi: 10.1162/neco_a_01009. Epub 2017 Aug 4.


Differential Covariance: A New Class of Methods to Estimate Sparse Connectivity from Neural Recordings.

Lin TW, Das A, Krishnan GP, Bazhenov M, Sejnowski TJ.

Neural Comput. 2017 Oct;29(10):2581-2632. doi: 10.1162/neco_a_01008. Epub 2017 Aug 4.


Decision-making neural circuits mediating social behaviors : An attractor network model.

Hurtado-López J, Ramirez-Moreno DF, Sejnowski TJ.

J Comput Neurosci. 2017 Oct;43(2):127-142. doi: 10.1007/s10827-017-0654-8. Epub 2017 Jun 29.



Sejnowski TJ.

In: Kennedy H, Van Essen DC, Christen Y, editors. Micro-, Meso- and Macro-Connectomics of the Brain [Internet]. Cham (CH): Springer; 2016.
2016 Mar 11.


Analytical Derivation of Nonlinear Spectral Effects and 1/f Scaling Artifact in Signal Processing of Real-World Data.

Lainscsek C, Muller LE, Sampson AL, Sejnowski TJ.

Neural Comput. 2017 Jul;29(7):2004-2020. doi: 10.1162/NECO_a_00979. Epub 2017 May 31.


Cortical gamma band synchronization through somatostatin interneurons.

Veit J, Hakim R, Jadi MP, Sejnowski TJ, Adesnik H.

Nat Neurosci. 2017 Jul;20(7):951-959. doi: 10.1038/nn.4562. Epub 2017 May 8.


A Dynamic Circuit Hypothesis for the Pathogenesis of Blepharospasm.

Peterson DA, Sejnowski TJ.

Front Comput Neurosci. 2017 Mar 7;11:11. doi: 10.3389/fncom.2017.00011. eCollection 2017.


Interpretation of the Precision Matrix and Its Application in Estimating Sparse Brain Connectivity during Sleep Spindles from Human Electrocorticography Recordings.

Das A, Sampson AL, Lainscsek C, Muller L, Lin W, Doyle JC, Cash SS, Halgren E, Sejnowski TJ.

Neural Comput. 2017 Mar;29(3):603-642. doi: 10.1162/NECO_a_00936. Epub 2017 Jan 17.


Dendritic trafficking faces physiologically critical speed-precision tradeoffs.

Williams AH, O'Donnell C, Sejnowski TJ, O'Leary T.

Elife. 2016 Dec 30;5. pii: e20556. doi: 10.7554/eLife.20556.


The Population Tracking Model: A Simple, Scalable Statistical Model for Neural Population Data.

O'Donnell C, Gonçalves JT, Whiteley N, Portera-Cailliau C, Sejnowski TJ.

Neural Comput. 2017 Jan;29(1):50-93. doi: 10.1162/NECO_a_00910. Epub 2016 Nov 21.


Rotating waves during human sleep spindles organize global patterns of activity that repeat precisely through the night.

Muller L, Piantoni G, Koller D, Cash SS, Halgren E, Sejnowski TJ.

Elife. 2016 Nov 15;5. pii: e17267. doi: 10.7554/eLife.17267.


Blending computational and experimental neuroscience.

Churchland PS, Sejnowski TJ.

Nat Rev Neurosci. 2016 Nov;17(11):667-668. doi: 10.1038/nrn.2016.114. Epub 2016 Sep 9.


Objective, computerized video-based rating of blepharospasm severity.

Peterson DA, Littlewort GC, Bartlett MS, Macerollo A, Perlmutter JS, Jinnah HA, Hallett M, Sejnowski TJ.

Neurology. 2016 Nov 15;87(20):2146-2153. Epub 2016 Oct 21.


Worldwide initiatives to advance brain research.

Grillner S, Ip N, Koch C, Koroshetz W, Okano H, Polachek M, Poo MM, Sejnowski TJ.

Nat Neurosci. 2016 Aug 26;19(9):1118-22. doi: 10.1038/nn.4371. Review. No abstract available.


A path toward understanding neurodegeneration.

Kosik KS, Sejnowski TJ, Raichle ME, Ciechanover A, Baltimore D.

Science. 2016 Aug 26;353(6302):872-3. doi: 10.1126/science.aai7622. No abstract available.


Learning to soar in turbulent environments.

Reddy G, Celani A, Sejnowski TJ, Vergassola M.

Proc Natl Acad Sci U S A. 2016 Aug 16;113(33):E4877-84. doi: 10.1073/pnas.1606075113. Epub 2016 Aug 1.


Conservation law for self-paced movements.

Huh D, Sejnowski TJ.

Proc Natl Acad Sci U S A. 2016 Aug 2;113(31):8831-6. doi: 10.1073/pnas.1608724113. Epub 2016 Jul 14. Erratum in: Proc Natl Acad Sci U S A. 2016 Sep 13;113(37):E5539.

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