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Items: 45

1.

ReQTL: Identifying correlations between expressed SNVs and gene expression using RNA-sequencing data.

Spurr L, Alomran N, Bousounis P, Reece-Stremtan D, Prashant NM, Liu H, Słowiński P, Li M, Zhang Q, Sein J, Asher G, Crandall KA, Tsaneva-Atanasova K, Horvath A.

Bioinformatics. 2019 Oct 7. pii: btz750. doi: 10.1093/bioinformatics/btz750. [Epub ahead of print]

PMID:
31589315
2.

Top-down activation of the visuo-orthographic system during spoken sentence processing.

Planton S, Chanoine V, Sein J, Anton JL, Nazarian B, Pallier C, Pattamadilok C.

Neuroimage. 2019 Aug 27;202:116135. doi: 10.1016/j.neuroimage.2019.116135. [Epub ahead of print]

PMID:
31470125
3.

Diffusion MRI: Assessment of the Impact of Acquisition and Preprocessing Methods Using the BrainVISA-Diffuse Toolbox.

Brun L, Pron A, Sein J, Deruelle C, Coulon O.

Front Neurosci. 2019 Jun 7;13:536. doi: 10.3389/fnins.2019.00536. eCollection 2019.

4.

An Open Resource for Non-human Primate Imaging.

Milham MP, Ai L, Koo B, Xu T, Amiez C, Balezeau F, Baxter MG, Blezer ELA, Brochier T, Chen A, Croxson PL, Damatac CG, Dehaene S, Everling S, Fair DA, Fleysher L, Freiwald W, Froudist-Walsh S, Griffiths TD, Guedj C, Hadj-Bouziane F, Ben Hamed S, Harel N, Hiba B, Jarraya B, Jung B, Kastner S, Klink PC, Kwok SC, Laland KN, Leopold DA, Lindenfors P, Mars RB, Menon RS, Messinger A, Meunier M, Mok K, Morrison JH, Nacef J, Nagy J, Rios MO, Petkov CI, Pinsk M, Poirier C, Procyk E, Rajimehr R, Reader SM, Roelfsema PR, Rudko DA, Rushworth MFS, Russ BE, Sallet J, Schmid MC, Schwiedrzik CM, Seidlitz J, Sein J, Shmuel A, Sullivan EL, Ungerleider L, Thiele A, Todorov OS, Tsao D, Wang Z, Wilson CRE, Yacoub E, Ye FQ, Zarco W, Zhou YD, Margulies DS, Schroeder CE.

Neuron. 2018 Oct 10;100(1):61-74.e2. doi: 10.1016/j.neuron.2018.08.039. Epub 2018 Sep 27.

5.

Preoperative Electrophysiological Characterization of Patients with Primary Macula-involving Rhegmatogenous Retinal Detachment.

Lin JB, Sein J, Van Stavern GP, Apte RS.

J Ophthalmic Vis Res. 2018 Jul-Sep;13(3):241-248. doi: 10.4103/jovr.jovr_161_17.

6.

Patterns of care and survival outcomes after treatment for uveal melanoma in the post-coms era (2004-2013): a surveillance, epidemiology, and end results analysis.

Rao YJ, Sein J, Badiyan S, Schwarz JK, DeWees T, Grigsby P, Rao PK.

J Contemp Brachytherapy. 2017 Oct;9(5):453-465. doi: 10.5114/jcb.2017.70986. Epub 2017 Oct 20.

7.

GDF15 is elevated in mice following retinal ganglion cell death and in glaucoma patients.

Ban N, Siegfried CJ, Lin JB, Shui YB, Sein J, Pita-Thomas W, Sene A, Santeford A, Gordon M, Lamb R, Dong Z, Kelly SC, Cavalli V, Yoshino J, Apte RS.

JCI Insight. 2017 May 4;2(9). pii: 91455. doi: 10.1172/jci.insight.91455. eCollection 2017 May 4.

8.

Free water elimination improves test-retest reproducibility of diffusion tensor imaging indices in the brain: A longitudinal multisite study of healthy elderly subjects.

Albi A, Pasternak O, Minati L, Marizzoni M, Bartrés-Faz D, Bargalló N, Bosch B, Rossini PM, Marra C, Müller B, Fiedler U, Wiltfang J, Roccatagliata L, Picco A, Nobili FM, Blin O, Sein J, Ranjeva JP, Didic M, Bombois S, Lopes R, Bordet R, Gros-Dagnac H, Payoux P, Zoccatelli G, Alessandrini F, Beltramello A, Ferretti A, Caulo M, Aiello M, Cavaliere C, Soricelli A, Parnetti L, Tarducci R, Floridi P, Tsolaki M, Constantinidis M, Drevelegas A, Frisoni G, Jovicich J; PharmaCog Consortium.

Hum Brain Mapp. 2017 Jan;38(1):12-26. doi: 10.1002/hbm.23350. Epub 2016 Aug 13.

9.

Treatment of Coats' Disease With Combination Therapy of Intravitreal Bevacizumab, Laser Photocoagulation, and Sub-Tenon Corticosteroids.

Sein J, Tzu JH, Murray TG, Berrocal AM.

Ophthalmic Surg Lasers Imaging Retina. 2016 May 1;47(5):443-9. doi: 10.3928/23258160-20160419-07.

PMID:
27183548
10.

Robust imaging of hippocampal inner structure at 7T: in vivo acquisition protocol and methodological choices.

Marrakchi-Kacem L, Vignaud A, Sein J, Germain J, Henry TR, Poupon C, Hertz-Pannier L, Lehéricy S, Colliot O, Van de Moortele PF, Chupin M.

MAGMA. 2016 Jun;29(3):475-89. doi: 10.1007/s10334-016-0552-5. Epub 2016 May 2.

11.

Test-retest reliability of the default mode network in a multi-centric fMRI study of healthy elderly: Effects of data-driven physiological noise correction techniques.

Marchitelli R, Minati L, Marizzoni M, Bosch B, Bartrés-Faz D, Müller BW, Wiltfang J, Fiedler U, Roccatagliata L, Picco A, Nobili F, Blin O, Bombois S, Lopes R, Bordet R, Sein J, Ranjeva JP, Didic M, Gros-Dagnac H, Payoux P, Zoccatelli G, Alessandrini F, Beltramello A, Bargalló N, Ferretti A, Caulo M, Aiello M, Cavaliere C, Soricelli A, Parnetti L, Tarducci R, Floridi P, Tsolaki M, Constantinidis M, Drevelegas A, Rossini PM, Marra C, Schönknecht P, Hensch T, Hoffmann KT, Kuijer JP, Visser PJ, Barkhof F, Frisoni GB, Jovicich J.

Hum Brain Mapp. 2016 Jun;37(6):2114-32. doi: 10.1002/hbm.23157. Epub 2016 Mar 17.

PMID:
26990928
12.

Longitudinal reproducibility of default-mode network connectivity in healthy elderly participants: A multicentric resting-state fMRI study.

Jovicich J, Minati L, Marizzoni M, Marchitelli R, Sala-Llonch R, Bartrés-Faz D, Arnold J, Benninghoff J, Fiedler U, Roccatagliata L, Picco A, Nobili F, Blin O, Bombois S, Lopes R, Bordet R, Sein J, Ranjeva JP, Didic M, Gros-Dagnac H, Payoux P, Zoccatelli G, Alessandrini F, Beltramello A, Bargalló N, Ferretti A, Caulo M, Aiello M, Cavaliere C, Soricelli A, Parnetti L, Tarducci R, Floridi P, Tsolaki M, Constantinidis M, Drevelegas A, Rossini PM, Marra C, Schönknecht P, Hensch T, Hoffmann KT, Kuijer JP, Visser PJ, Barkhof F, Frisoni GB; PharmaCog Consortium.

Neuroimage. 2016 Jan 1;124(Pt A):442-454. doi: 10.1016/j.neuroimage.2015.07.010. Epub 2015 Jul 9.

PMID:
26163799
13.

Longitudinal reproducibility of automatically segmented hippocampal subfields: A multisite European 3T study on healthy elderly.

Marizzoni M, Antelmi L, Bosch B, Bartrés-Faz D, Müller BW, Wiltfang J, Fiedler U, Roccatagliata L, Picco A, Nobili F, Blin O, Bombois S, Lopes R, Sein J, Ranjeva JP, Didic M, Gros-Dagnac H, Payoux P, Zoccatelli G, Alessandrini F, Beltramello A, Bargalló N, Ferretti A, Caulo M, Aiello M, Cavaliere C, Soricelli A, Salvadori N, Parnetti L, Tarducci R, Floridi P, Tsolaki M, Constantinidis M, Drevelegas A, Rossini PM, Marra C, Hoffmann KT, Hensch T, Schönknecht P, Kuijer JP, Visser PJ, Barkhof F, Bordet R, Frisoni GB, Jovicich J; PharmaCog Consortium.

Hum Brain Mapp. 2015 Sep;36(9):3516-27. doi: 10.1002/hbm.22859. Epub 2015 Jun 3.

PMID:
26043939
14.

Surgical versus medical treatment of ocular surface squamous neoplasia: a comparison of recurrences and complications.

Nanji AA, Moon CS, Galor A, Sein J, Oellers P, Karp CL.

Ophthalmology. 2014 May;121(5):994-1000. doi: 10.1016/j.ophtha.2013.11.017. Epub 2014 Jan 9.

15.

Intracranial-derived atherosclerosis assessment: an in vitro comparison between virtual histology by intravascular ultrasonography, 7T MRI, and histopathologic findings.

Majidi S, Sein J, Watanabe M, Hassan AE, Van de Moortele PF, Suri MF, Clark HB, Qureshi AI.

AJNR Am J Neuroradiol. 2013 Dec;34(12):2259-64. doi: 10.3174/ajnr.A3631. Epub 2013 Jun 27.

16.

Exfoliation syndrome: new genetic and pathophysiologic insights.

Sein J, Galor A, Sheth A, Kruh J, Pasquale LR, Karp CL.

Curr Opin Ophthalmol. 2013 Mar;24(2):167-74. doi: 10.1097/ICU.0b013e32835d5d11. Review.

PMID:
23299249
17.

Fluorescein angiography findings in a case of Rubinstein-Taybi syndrome.

Jacobs DJ, Sein J, Berrocal AM, Grajewski AL, Hodapp E.

Clin Ophthalmol. 2012;6:1369-71. doi: 10.2147/OPTH.S31023. Epub 2012 Aug 22.

18.

Universal newborn screening: knowledge, attitudes, and satisfaction among public health professionals.

Dunn L, Gordon K, Sein J, Ross K.

South Med J. 2012 Apr;105(4):218-22. doi: 10.1097/SMJ.0b013e31824f8220.

PMID:
22475673
19.

[Genetic characterization of the virus causing H1N1 influenza pandemic in Chile: analysis of the first detected cases].

Fasce RA, Tognarelli J, Mora J, Torres G, Andrade W, Bustos P, Araya P, Balanda M, Aguayo C, Sein J, Ramírez E, Fernández J.

Rev Med Chil. 2011 Jul;139(7):833-40. doi: /S0034-98872011000700002. Epub 2011 Sep 16. Spanish.

20.

Lack of anti-tumour reactivity despite enhanced numbers of circulating natural killer T cells in two patients with metastatic renal cell carcinoma.

Vyth-Dreese FA, Sein J, van de Kasteele W, Dellemijn TA, van den Bogaard C, Nooijen WJ, de Gast GC, Haanen JB, Bex A.

Clin Exp Immunol. 2010 Dec;162(3):447-59. doi: 10.1111/j.1365-2249.2010.04274.x. Epub 2010 Oct 5.

21.

Measurement of site-specific 13C spin-lattice relaxation in a crystalline protein.

Lewandowski JR, Sein J, Sass HJ, Grzesiek S, Blackledge M, Emsley L.

J Am Chem Soc. 2010 Jun 23;132(24):8252-4. doi: 10.1021/ja102744b.

PMID:
20507068
22.

Anisotropic collective motion contributes to nuclear spin relaxation in crystalline proteins.

Lewandowski JR, Sein J, Blackledge M, Emsley L.

J Am Chem Soc. 2010 Feb 3;132(4):1246-8. doi: 10.1021/ja907067j.

PMID:
19916496
23.

Band-selective 1H-13C cross-polarization in fast magic angle spinning solid-state NMR spectroscopy.

Laage S, Marchetti A, Sein J, Pierattelli R, Sass HJ, Grzesiek S, Lesage A, Pintacuda G, Emsley L.

J Am Chem Soc. 2008 Dec 24;130(51):17216-7. doi: 10.1021/ja805926d.

PMID:
19053413
24.

The refocused INADEQUATE MAS NMR experiment in multiple spin-systems: interpreting observed correlation peaks and optimising lineshapes.

Cadars S, Sein J, Duma L, Lesage A, Pham TN, Baltisberger JH, Brown SP, Emsley L.

J Magn Reson. 2007 Sep;188(1):24-34. Epub 2007 Jun 6.

PMID:
17588789
25.

Phase I clinical study with multiple peptide vaccines in combination with tetanus toxoid and GM-CSF in advanced-stage HLA-A*0201-positive melanoma patients.

Bins A, Mallo H, Sein J, van den Bogaard C, Nooijen W, Vyth-Dreese F, Nuijen B, de Gast GC, Haanen JB.

J Immunother. 2007 Feb-Mar;30(2):234-9.

PMID:
17471170
26.

The role of (15)N CSA and CSA/dipole cross-correlation in (15)N relaxation in solid proteins.

Sein J, Giraud N, Blackledge M, Emsley L.

J Magn Reson. 2007 May;186(1):26-33. Epub 2007 Jan 20.

PMID:
17280844
27.

Observation of heteronuclear overhauser effects confirms the 15N-1H dipolar relaxation mechanism in a crystalline protein.

Giraud N, Sein J, Pintacuda G, Böckmann A, Lesage A, Blackledge M, Emsley L.

J Am Chem Soc. 2006 Sep 27;128(38):12398-9.

PMID:
16984173
28.

Immunogenicity, including vitiligo, and feasibility of vaccination with autologous GM-CSF-transduced tumor cells in metastatic melanoma patients.

Luiten RM, Kueter EW, Mooi W, Gallee MP, Rankin EM, Gerritsen WR, Clift SM, Nooijen WJ, Weder P, van de Kasteele WF, Sein J, van den Berk PC, Nieweg OE, Berns AM, Spits H, de Gast GC.

J Clin Oncol. 2005 Dec 10;23(35):8978-91. Epub 2005 Oct 31.

PMID:
16260696
29.

Infiltration of activated dendritic cells and T cells in renal cell carcinoma following combined cytokine immunotherapy.

Verra N, de Jong D, Bex A, Batchelor D, Dellemijn T, Sein J, Nooijen W, Meinhardt W, Horenblas S, de Gast G, Vyth-Dreese F.

Eur Urol. 2005 Sep;48(3):527-33. Epub 2005 Apr 11.

PMID:
16115526
30.

On the role of melanoma-specific CD8+ T-cell immunity in disease progression of advanced-stage melanoma patients.

van Oijen M, Bins A, Elias S, Sein J, Weder P, de Gast G, Mallo H, Gallee M, Van Tinteren H, Schumacher T, Haanen J.

Clin Cancer Res. 2004 Jul 15;10(14):4754-60.

31.

Immunotherapy with concurrent subcutaneous GM-CSF, low-dose IL-2 and IFN-alpha in patients with progressive metastatic renal cell carcinoma.

Verra N, Jansen R, Groenewegen G, Mallo H, Kersten MJ, Bex A, Vyth-Dreese FA, Sein J, van de Kasteele W, Nooijen WJ, de Waal M, Horenblas S, de Gast GC.

Br J Cancer. 2003 May 6;88(9):1346-51.

32.

Temozolomide followed by combined immunotherapy with GM-CSF, low-dose IL2 and IFN alpha in patients with metastatic melanoma.

de Gast GC, Batchelor D, Kersten MJ, Vyth-Dreese FA, Sein J, van de Kasteele WF, Nooijen WJ, Nieweg OE, de Waal MA, Boogerd W.

Br J Cancer. 2003 Jan 27;88(2):175-80.

33.

Reinfusion of autologous lymphocytes with granulocyte-macrophage colony-stimulating factor induces rapid recovery of CD4+ and CD8+ T cells after high-dose chemotherapy for metastatic breast cancer.

de Gast GC, Vyth-Dreese FA, Nooijen W, van den Bogaard CJ, Sein J, Holtkamp MM, Linthorst GA, Baars JW, Schornagel JH, Rodenhuis S.

J Clin Oncol. 2002 Jan 1;20(1):58-64.

PMID:
11773154
34.

Phase I trial of combined immunotherapy with subcutaneous granulocyte macrophage colony-stimulating factor, low-dose interleukin 2, and interferon alpha in progressive metastatic melanoma and renal cell carcinoma.

de Gast GC, Klümpen HJ, Vyth-Dreese FA, Kersten MJ, Verra NC, Sein J, Batchelor D, Nooijen WJ, Schornagel JH.

Clin Cancer Res. 2000 Apr;6(4):1267-72.

35.

Modulation of fatty acid oxidation alters contact hypersensitivity to urushiols: role of aliphatic chain beta-oxidation in processing and activation of urushiols.

Kalergis AM, López CB, Becker MI, Díaz MI, Sein J, Garbarino JA, De Ioannes AE.

J Invest Dermatol. 1997 Jan;108(1):57-61.

36.

Lysis of syngeneic tumor B cells by autoreactive cytotoxic T lymphocytes specific for a CD19 antigen-derived synthetic peptide.

Hooijberg E, Visseren MJ, van den Berk PC, Jellema AP, Romeijn P, Sein JJ, van der Voort EI, Hekman A, Ossendorp F, Melief CJ.

J Immunother Emphasis Tumor Immunol. 1996 Sep;19(5):346-56.

PMID:
8941874
37.

Characterization of a series of isotype switch variants of a new CD20 monoclonal antibody.

Hooijberg E, Sein JJ, van den Berk PC, Hekman A.

Hybridoma. 1996 Feb;15(1):23-31.

PMID:
9064283
38.

Eradication of large human B cell tumors in nude mice with unconjugated CD20 monoclonal antibodies and interleukin 2.

Hooijberg E, Sein JJ, van den Berk PC, Hart AA, van der Valk MA, Kast WM, Melief CJ, Hekman A.

Cancer Res. 1995 Jun 15;55(12):2627-34.

39.

Enhanced antitumor effects of CD20 over CD19 monoclonal antibodies in a nude mouse xenograft model.

Hooijberg E, van den Berk PC, Sein JJ, Wijdenes J, Hart AA, de Boer RW, Melief CJ, Hekman A.

Cancer Res. 1995 Feb 15;55(4):840-6.

40.

Treatment of low-grade non-Hodgkin's lymphoma with continuous infusion of low-dose recombinant interleukin-2 in combination with the B-cell-specific monoclonal antibody CLB-CD19.

Vlasveld LT, Hekman A, Vyth-Dreese FA, Melief CJ, Sein JJ, Voordouw AC, Dellemijn TA, Rankin EM.

Cancer Immunol Immunother. 1995 Jan;40(1):37-47.

PMID:
7530170
41.

A phase I study of prolonged continuous infusion of low dose recombinant interleukin-2 in melanoma and renal cell cancer. Part II: Immunological aspects.

Vlasveld LT, Hekman A, Vyth-Dreese FA, Rankin EM, Scharenberg JG, Voordouw AC, Sein JJ, Dellemijn TA, Rodenhuis S, Melief CJ.

Br J Cancer. 1993 Sep;68(3):559-67.

42.

Possible role for cytotoxic lymphocytes in the pathogenesis of acute interstitial nephritis after recombinant interleukin-2 treatment for renal cell cancer.

Vlasveld LT, van de Wiel-van Kemenade E, de Boer AJ, Sein JJ, Gallee MP, Krediet RT, Mellief CJ, Rankin EM, Hekman A, Figdor CG.

Cancer Immunol Immunother. 1993;36(3):210-3.

PMID:
8439983
43.

Reconstitution of recombinant interleukin-2 (rIL-2): a comparative study of various rIL-2 muteins.

Vlasveld LT, Beijnen JH, Sein JJ, Rankin EM, Melief CJ, Hekman A.

Eur J Cancer. 1993;29A(14):1977-9.

PMID:
8280492
44.

Mucin allows survival of Salmonella typhi within mouse peritoneal macrophages.

Sein J, Cachicas V, Becker MI, De Ioannes AE.

Biol Res. 1993;26(3):371-9.

PMID:
7606257
45.

Initial experience with treatment of human B cell lymphoma with anti-CD19 monoclonal antibody.

Hekman A, Honselaar A, Vuist WM, Sein JJ, Rodenhuis S, ten Bokkel Huinink WW, Somers R, Rümke P, Melief CJ.

Cancer Immunol Immunother. 1991;32(6):364-72.

PMID:
1706642

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