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Items: 43

1.

New Geographical Insights of the Latest Expansion of Fusarium oxysporum f.sp. cubense Tropical Race 4 Into the Greater Mekong Subregion.

Zheng SJ, García-Bastidas FA, Li X, Zeng L, Bai T, Xu S, Yin K, Li H, Fu G, Yu Y, Yang L, Nguyen HC, Douangboupha B, Khaing AA, Drenth A, Seidl MF, Meijer HJG, Kema GHJ.

Front Plant Sci. 2018 Apr 9;9:457. doi: 10.3389/fpls.2018.00457. eCollection 2018.

2.

Stress and sexual reproduction affect the dynamics of the wheat pathogen effector AvrStb6 and strobilurin resistance.

Kema GHJ, Mirzadi Gohari A, Aouini L, Gibriel HAY, Ware SB, van den Bosch F, Manning-Smith R, Alonso-Chavez V, Helps J, Ben M'Barek S, Mehrabi R, Diaz-Trujillo C, Zamani E, Schouten HJ, van der Lee TAJ, Waalwijk C, de Waard MA, de Wit PJGM, Verstappen ECP, Thomma BPHJ, Meijer HJG, Seidl MF.

Nat Genet. 2018 Mar;50(3):375-380. doi: 10.1038/s41588-018-0052-9. Epub 2018 Feb 12.

PMID:
29434356
3.

Gapless Genome Assembly of the Potato and Tomato Early Blight Pathogen Alternaria solani.

Wolters PJ, Faino L, van den Bosch TBM, Evenhuis B, Visser RGF, Seidl MF, Vleeshouwers VGAA.

Mol Plant Microbe Interact. 2018 Jul;31(7):692-694. doi: 10.1094/MPMI-12-17-0309-A. Epub 2018 May 18.

4.

The Ancient Link between G-Protein-Coupled Receptors and C-Terminal Phospholipid Kinase Domains.

van den Hoogen DJ, Meijer HJG, Seidl MF, Govers F.

MBio. 2018 Jan 23;9(1). pii: e02119-17. doi: 10.1128/mBio.02119-17.

5.

Evolution within the fungal genus Verticillium is characterized by chromosomal rearrangement and gene loss.

Shi-Kunne X, Faino L, van den Berg GCM, Thomma BPHJ, Seidl MF.

Environ Microbiol. 2018 Apr;20(4):1362-1373. doi: 10.1111/1462-2920.14037. Epub 2018 Jan 5.

PMID:
29282842
6.

Genome-wide characterization of Phytophthora infestans metabolism: a systems biology approach.

Rodenburg SYA, Seidl MF, de Ridder D, Govers F.

Mol Plant Pathol. 2018 Jun;19(6):1403-1413. doi: 10.1111/mpp.12623. Epub 2018 Jan 30.

PMID:
28990716
7.

Transposable Elements Direct The Coevolution between Plants and Microbes.

Seidl MF, Thomma BPHJ.

Trends Genet. 2017 Nov;33(11):842-851. doi: 10.1016/j.tig.2017.07.003. Epub 2017 Aug 8. Review.

PMID:
28800915
8.

Adenine N6-methylation in diverse fungi.

Seidl MF.

Nat Genet. 2017 May 26;49(6):823-824. doi: 10.1038/ng.3873.

PMID:
28546576
9.

A distinct and genetically diverse lineage of the hybrid fungal pathogen Verticillium longisporum population causes stem striping in British oilseed rape.

Depotter JRL, Seidl MF, van den Berg GCM, Thomma BPHJ, Wood TA.

Environ Microbiol. 2017 Oct;19(10):3997-4009. doi: 10.1111/1462-2920.13801. Epub 2017 Jun 27.

PMID:
28523726
10.

The complete genome sequence of the phytopathogenic fungus Sclerotinia sclerotiorum reveals insights into the genome architecture of broad host range pathogens.

Derbyshire M, Denton-Giles M, Hegedus D, Seifbarghy S, Rollins J, van Kan J, Seidl MF, Faino L, Mbengue M, Navaud O, Raffaele S, Hammond-Kosack K, Heard S, Oliver R.

Genome Biol Evol. 2017 Feb 15. doi: 10.1093/gbe/evx030. [Epub ahead of print] No abstract available.

11.

Verticillium dahliae LysM effectors differentially contribute to virulence on plant hosts.

Kombrink A, Rovenich H, Shi-Kunne X, Rojas-Padilla E, van den Berg GC, Domazakis E, de Jonge R, Valkenburg DJ, Sánchez-Vallet A, Seidl MF, Thomma BP.

Mol Plant Pathol. 2017 May;18(4):596-608. doi: 10.1111/mpp.12520. Epub 2017 Feb 14.

PMID:
27911046
12.

Chromatin Biology Impacts Adaptive Evolution of Filamentous Plant Pathogens.

Seidl MF, Cook DE, Thomma BP.

PLoS Pathog. 2016 Nov 3;12(11):e1005920. doi: 10.1371/journal.ppat.1005920. eCollection 2016 Nov. Review. No abstract available.

13.

Transposons passively and actively contribute to evolution of the two-speed genome of a fungal pathogen.

Faino L, Seidl MF, Shi-Kunne X, Pauper M, van den Berg GC, Wittenberg AH, Thomma BP.

Genome Res. 2016 Aug;26(8):1091-100. doi: 10.1101/gr.204974.116. Epub 2016 Jun 20.

14.

Interspecific hybridization impacts host range and pathogenicity of filamentous microbes.

Depotter JR, Seidl MF, Wood TA, Thomma BP.

Curr Opin Microbiol. 2016 Aug;32:7-13. doi: 10.1016/j.mib.2016.04.005. Epub 2016 Apr 23. Review.

15.

The Age of Effectors: Genome-Based Discovery and Applications.

Gibriel HA, Thomma BP, Seidl MF.

Phytopathology. 2016 Oct;106(10):1206-1212. Epub 2016 Jun 21.

16.

Alternaria section Alternaria: Species, formae speciales or pathotypes?

Woudenberg JH, Seidl MF, Groenewald JZ, de Vries M, Stielow JB, Thomma BP, Crous PW.

Stud Mycol. 2015 Sep;82:1-21. doi: 10.1016/j.simyco.2015.07.001. Epub 2015 Aug 25.

17.

Broad taxonomic characterization of Verticillium wilt resistance genes reveals an ancient origin of the tomato Ve1 immune receptor.

Song Y, Zhang Z, Seidl MF, Majer A, Jakse J, Javornik B, Thomma BP.

Mol Plant Pathol. 2017 Feb;18(2):195-209. doi: 10.1111/mpp.12390. Epub 2016 Jun 9.

PMID:
26946045
18.

A gapless genome sequence of the fungus Botrytis cinerea.

Van Kan JA, Stassen JH, Mosbach A, Van Der Lee TA, Faino L, Farmer AD, Papasotiriou DG, Zhou S, Seidl MF, Cottam E, Edel D, Hahn M, Schwartz DC, Dietrich RA, Widdison S, Scalliet G.

Mol Plant Pathol. 2017 Jan;18(1):75-89. doi: 10.1111/mpp.12384. Epub 2016 Jun 9.

PMID:
26913498
19.

Biochemical characterization of the tomato phosphatidylinositol-specific phospholipase C (PI-PLC) family and its role in plant immunity.

Abd-El-Haliem AM, Vossen JH, van Zeijl A, Dezhsetan S, Testerink C, Seidl MF, Beck M, Strutt J, Robatzek S, Joosten MHAJ.

Biochim Biophys Acta. 2016 Sep;1861(9 Pt B):1365-1378. doi: 10.1016/j.bbalip.2016.01.017. Epub 2016 Jan 26.

PMID:
26825689
20.

Worse Comes to Worst: Bananas and Panama Disease--When Plant and Pathogen Clones Meet.

Ordonez N, Seidl MF, Waalwijk C, Drenth A, Kilian A, Thomma BP, Ploetz RC, Kema GH.

PLoS Pathog. 2015 Nov 19;11(11):e1005197. doi: 10.1371/journal.ppat.1005197. eCollection 2015. Review. No abstract available.

21.

Biochemical Characterization of Putative Adenylate Dimethylallyltransferase and Cytokinin Dehydrogenase from Nostoc sp. PCC 7120.

Frébortová J, Greplová M, Seidl MF, Heyl A, Frébort I.

PLoS One. 2015 Sep 16;10(9):e0138468. doi: 10.1371/journal.pone.0138468. eCollection 2015.

22.

Mind the gap; seven reasons to close fragmented genome assemblies.

Thomma BPHJ, Seidl MF, Shi-Kunne X, Cook DE, Bolton MD, van Kan JAL, Faino L.

Fungal Genet Biol. 2016 May;90:24-30. doi: 10.1016/j.fgb.2015.08.010. Epub 2015 Sep 2. Review.

PMID:
26342853
23.

Single-Molecule Real-Time Sequencing Combined with Optical Mapping Yields Completely Finished Fungal Genome.

Faino L, Seidl MF, Datema E, van den Berg GC, Janssen A, Wittenberg AH, Thomma BP.

MBio. 2015 Aug 18;6(4). pii: e00936-15. doi: 10.1128/mBio.00936-15.

24.

Draft Genome Sequence of a Strain of Cosmopolitan Fungus Trichoderma atroviride.

Shi-Kunne X, Seidl MF, Faino L, Thomma BP.

Genome Announc. 2015 May 7;3(3). pii: e00287-15. doi: 10.1128/genomeA.00287-15.

25.

Members of a recently discovered subfamily of cytokinin receptors display differences and similarities to their classical counterparts.

Gruhn N, Seidl MF, Halawa M, Heyl A.

Plant Signal Behav. 2015;10(2):e984512. doi: 10.4161/21659087.2014.984512.

26.

DOWNY MILDEW RESISTANT 6 and DMR6-LIKE OXYGENASE 1 are partially redundant but distinct suppressors of immunity in Arabidopsis.

Zeilmaker T, Ludwig NR, Elberse J, Seidl MF, Berke L, Van Doorn A, Schuurink RC, Snel B, Van den Ackerveken G.

Plant J. 2015 Jan;81(2):210-22. doi: 10.1111/tpj.12719. Epub 2014 Dec 9.

27.

Functional analysis of Hyaloperonospora arabidopsidis RXLR effectors.

Pel MJ, Wintermans PC, Cabral A, Robroek BJ, Seidl MF, Bautor J, Parker JE, Van den Ackerveken G, Pieterse CM.

PLoS One. 2014 Nov 6;9(11):e110624. doi: 10.1371/journal.pone.0110624. eCollection 2014.

28.

The Genome of the Saprophytic Fungus Verticillium tricorpus Reveals a Complex Effector Repertoire Resembling That of Its Pathogenic Relatives.

Seidl MF, Faino L, Shi-Kunne X, van den Berg GC, Bolton MD, Thomma BP.

Mol Plant Microbe Interact. 2015 Mar;28(3):362-73. doi: 10.1094/MPMI-06-14-0173-R.

29.

Profiling the secretome and extracellular proteome of the potato late blight pathogen Phytophthora infestans.

Meijer HJ, Mancuso FM, Espadas G, Seidl MF, Chiva C, Govers F, Sabidó E.

Mol Cell Proteomics. 2014 Aug;13(8):2101-13. doi: 10.1074/mcp.M113.035873. Epub 2014 May 28.

30.

Small homologous blocks in phytophthora genomes do not point to an ancient whole-genome duplication.

van Hooff JJ, Snel B, Seidl MF.

Genome Biol Evol. 2014 May;6(5):1079-85. doi: 10.1093/gbe/evu081.

31.

Pseudomonas syringae evades host immunity by degrading flagellin monomers with alkaline protease AprA.

Pel MJ, van Dijken AJ, Bardoel BW, Seidl MF, van der Ent S, van Strijp JA, Pieterse CM.

Mol Plant Microbe Interact. 2014 Jul;27(7):603-10. doi: 10.1094/MPMI-02-14-0032-R.

32.

Quantitative label-free phosphoproteomics of six different life stages of the late blight pathogen Phytophthora infestans reveals abundant phosphorylation of members of the CRN effector family.

Resjö S, Ali A, Meijer HJ, Seidl MF, Snel B, Sandin M, Levander F, Govers F, Andreasson E.

J Proteome Res. 2014 Apr 4;13(4):1848-59. doi: 10.1021/pr4009095. Epub 2014 Mar 17.

PMID:
24588563
33.

Sex or no sex: evolutionary adaptation occurs regardless.

Seidl MF, Thomma BP.

Bioessays. 2014 Apr;36(4):335-45. doi: 10.1002/bies.201300155. Epub 2014 Feb 13.

34.

A subfamily of putative cytokinin receptors is revealed by an analysis of the evolution of the two-component signaling system of plants.

Gruhn N, Halawa M, Snel B, Seidl MF, Heyl A.

Plant Physiol. 2014 May;165(1):227-37. doi: 10.1104/pp.113.228080. Epub 2014 Feb 11.

35.

Shared protein complex subunits contribute to explaining disrupted co-occurrence.

Schneider A, Seidl MF, Snel B.

PLoS Comput Biol. 2013;9(7):e1003124. doi: 10.1371/journal.pcbi.1003124. Epub 2013 Jul 18.

36.

A predicted functional gene network for the plant pathogen Phytophthora infestans as a framework for genomic biology.

Seidl MF, Schneider A, Govers F, Snel B.

BMC Genomics. 2013 Jul 17;14:483. doi: 10.1186/1471-2164-14-483.

37.

Distinctive expansion of potential virulence genes in the genome of the oomycete fish pathogen Saprolegnia parasitica.

Jiang RH, de Bruijn I, Haas BJ, Belmonte R, Löbach L, Christie J, van den Ackerveken G, Bottin A, Bulone V, Díaz-Moreno SM, Dumas B, Fan L, Gaulin E, Govers F, Grenville-Briggs LJ, Horner NR, Levin JZ, Mammella M, Meijer HJ, Morris P, Nusbaum C, Oome S, Phillips AJ, van Rooyen D, Rzeszutek E, Saraiva M, Secombes CJ, Seidl MF, Snel B, Stassen JH, Sykes S, Tripathy S, van den Berg H, Vega-Arreguin JC, Wawra S, Young SK, Zeng Q, Dieguez-Uribeondo J, Russ C, Tyler BM, van West P.

PLoS Genet. 2013 Jun;9(6):e1003272. doi: 10.1371/journal.pgen.1003272. Epub 2013 Jun 13.

38.

Bioinformatic inference of specific and general transcription factor binding sites in the plant pathogen Phytophthora infestans.

Seidl MF, Wang RP, Van den Ackerveken G, Govers F, Snel B.

PLoS One. 2012;7(12):e51295. doi: 10.1371/journal.pone.0051295. Epub 2012 Dec 12.

39.

Effector identification in the lettuce downy mildew Bremia lactucae by massively parallel transcriptome sequencing.

Stassen JH, Seidl MF, Vergeer PW, Nijman IJ, Snel B, Cuppen E, Van den Ackerveken G.

Mol Plant Pathol. 2012 Sep;13(7):719-31. doi: 10.1111/j.1364-3703.2011.00780.x. Epub 2012 Feb 1.

PMID:
22293108
40.

Reconstruction of oomycete genome evolution identifies differences in evolutionary trajectories leading to present-day large gene families.

Seidl MF, Van den Ackerveken G, Govers F, Snel B.

Genome Biol Evol. 2012;4(3):199-211. doi: 10.1093/gbe/evs003. Epub 2012 Jan 9.

41.

Identification of Hyaloperonospora arabidopsidis transcript sequences expressed during infection reveals isolate-specific effectors.

Cabral A, Stassen JH, Seidl MF, Bautor J, Parker JE, Van den Ackerveken G.

PLoS One. 2011 May 9;6(5):e19328. doi: 10.1371/journal.pone.0019328.

42.

A domain-centric analysis of oomycete plant pathogen genomes reveals unique protein organization.

Seidl MF, Van den Ackerveken G, Govers F, Snel B.

Plant Physiol. 2011 Feb;155(2):628-44. doi: 10.1104/pp.110.167841. Epub 2010 Nov 30.

43.

Evolutionary flexibility of protein complexes.

Seidl MF, Schultz J.

BMC Evol Biol. 2009 Jul 7;9:155. doi: 10.1186/1471-2148-9-155.

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