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Items: 30

1.

A Role for FACT in RNA Polymerase II Promoter-Proximal Pausing.

Tettey TT, Gao X, Shao W, Li H, Story BA, Chitsazan AD, Glaser RL, Goode ZH, Seidel CW, Conaway RC, Zeitlinger J, Blanchette M, Conaway JW.

Cell Rep. 2019 Jun 25;27(13):3770-3779.e7. doi: 10.1016/j.celrep.2019.05.099.

2.

Characterization of a metazoan ADA acetyltransferase complex.

Soffers JHM, Li X, Saraf A, Seidel CW, Florens L, Washburn MP, Abmayr SM, Workman JL.

Nucleic Acids Res. 2019 Apr 23;47(7):3383-3394. doi: 10.1093/nar/gkz042.

3.

Schizosaccharomyces pombe Pol II transcription elongation factor ELL functions as part of a rudimentary super elongation complex.

Gopalan S, Gibbon DM, Banks CA, Zhang Y, Florens LA, Washburn MP, Dabas P, Sharma N, Seidel CW, Conaway RC, Conaway JW.

Nucleic Acids Res. 2018 Nov 2;46(19):10095-10105. doi: 10.1093/nar/gky713.

4.

Cellular, ultrastructural and molecular analyses of epidermal cell development in the planarian Schmidtea mediterranea.

Cheng LC, Tu KC, Seidel CW, Robb SMC, Guo F, Sánchez Alvarado A.

Dev Biol. 2018 Jan 15;433(2):357-373. doi: 10.1016/j.ydbio.2017.08.030. Epub 2017 Oct 31.

5.

Enzymatic modules of the SAGA chromatin-modifying complex play distinct roles in Drosophila gene expression and development.

Li X, Seidel CW, Szerszen LT, Lange JJ, Workman JL, Abmayr SM.

Genes Dev. 2017 Aug 1;31(15):1588-1600. doi: 10.1101/gad.300988.117. Epub 2017 Sep 8.

6.

Aneuploidy as a cause of impaired chromatin silencing and mating-type specification in budding yeast.

Mulla WA, Seidel CW, Zhu J, Tsai HJ, Smith SE, Singh P, Bradford WD, McCroskey S, Nelliat AR, Conkright J, Peak A, Malanowski KE, Perera AG, Li R.

Elife. 2017 Aug 25;6. pii: e27991. doi: 10.7554/eLife.27991.

7.

Embryonic origin of adult stem cells required for tissue homeostasis and regeneration.

Davies EL, Lei K, Seidel CW, Kroesen AE, McKinney SA, Guo L, Robb SM, Ross EJ, Gotting K, Alvarado AS.

Elife. 2017 Jan 10;6. pii: e21052. doi: 10.7554/eLife.21052.

8.

Set1 and MLL1/2 Target Distinct Sets of Functionally Different Genomic Loci In Vivo.

Duncan EM, Chitsazan AD, Seidel CW, Alvarado AS.

Cell Rep. 2016 Oct 11;17(3):930. doi: 10.1016/j.celrep.2016.09.071. No abstract available.

9.

Transcriptome analysis of tetraploid cells identifies cyclin D2 as a facilitator of adaptation to genome doubling in the presence of p53.

Potapova TA, Seidel CW, Box AC, Rancati G, Li R.

Mol Biol Cell. 2016 Oct 15;27(20):3065-3084. Epub 2016 Aug 24.

10.

Egf Signaling Directs Neoblast Repopulation by Regulating Asymmetric Cell Division in Planarians.

Lei K, Thi-Kim Vu H, Mohan RD, McKinney SA, Seidel CW, Alexander R, Gotting K, Workman JL, Sánchez Alvarado A.

Dev Cell. 2016 Aug 22;38(4):413-29. doi: 10.1016/j.devcel.2016.07.012. Epub 2016 Aug 11.

11.

Pathogenic shifts in endogenous microbiota impede tissue regeneration via distinct activation of TAK1/MKK/p38.

Arnold CP, Merryman MS, Harris-Arnold A, McKinney SA, Seidel CW, Loethen S, Proctor KN, Guo L, Sánchez Alvarado A.

Elife. 2016 Jul 21;5. pii: e16793. doi: 10.7554/eLife.16793.

12.

Set1 and MLL1/2 Target Distinct Sets of Functionally Different Genomic Loci In Vivo.

Duncan EM, Chitsazan AD, Seidel CW, Sánchez Alvarado A.

Cell Rep. 2015 Dec 29;13(12):2741-55. doi: 10.1016/j.celrep.2015.11.059. Epub 2015 Dec 17. Erratum in: Cell Rep. 2016 Oct 11;17 (3):930.

13.

Karyotyping human and mouse cells using probes from single-sorted chromosomes and open source software.

Potapova TA, Unruh JR, Box AC, Bradford WD, Seidel CW, Slaughter BD, Sivagnanam S, Wu Y, Li R.

Biotechniques. 2015 Dec 1;59(6):335-6, 338, 340-2 passim. doi: 10.2144/000114362. eCollection 2015 Dec.

14.

Egr-5 is a post-mitotic regulator of planarian epidermal differentiation.

Tu KC, Cheng LC, T K Vu H, Lange JJ, McKinney SA, Seidel CW, Sánchez Alvarado A.

Elife. 2015 Oct 12;4:e10501. doi: 10.7554/eLife.10501.

15.

Targeting the adaptability of heterogeneous aneuploids.

Chen G, Mulla WA, Kucharavy A, Tsai HJ, Rubinstein B, Conkright J, McCroskey S, Bradford WD, Weems L, Haug JS, Seidel CW, Berman J, Li R.

Cell. 2015 Feb 12;160(4):771-784. doi: 10.1016/j.cell.2015.01.026.

16.

MED26 regulates the transcription of snRNA genes through the recruitment of little elongation complex.

Takahashi H, Takigawa I, Watanabe M, Anwar D, Shibata M, Tomomori-Sato C, Sato S, Ranjan A, Seidel CW, Tsukiyama T, Mizushima W, Hayashi M, Ohkawa Y, Conaway JW, Conaway RC, Hatakeyama S.

Nat Commun. 2015 Jan 9;6:5941. doi: 10.1038/ncomms6941.

17.

Suberoylanilide hydroxamic acid (SAHA)-induced dynamics of a human histone deacetylase protein interaction network.

Sardiu ME, Smith KT, Groppe BD, Gilmore JM, Saraf A, Egidy R, Peak A, Seidel CW, Florens L, Workman JL, Washburn MP.

Mol Cell Proteomics. 2014 Nov;13(11):3114-25. doi: 10.1074/mcp.M113.037127. Epub 2014 Jul 29.

18.

Selective amputation of the pharynx identifies a FoxA-dependent regeneration program in planaria.

Adler CE, Seidel CW, McKinney SA, Sánchez Alvarado A.

Elife. 2014 Apr 15;3:e02238. doi: 10.7554/eLife.02238.

19.

Controlling for gene expression changes in transcription factor protein networks.

Banks CA, Lee ZT, Boanca G, Lakshminarasimhan M, Groppe BD, Wen Z, Hattem GL, Seidel CW, Florens L, Washburn MP.

Mol Cell Proteomics. 2014 Jun;13(6):1510-22. doi: 10.1074/mcp.M113.033902. Epub 2014 Apr 10.

20.

Gene-expression analysis of hair cell regeneration in the zebrafish lateral line.

Jiang L, Romero-Carvajal A, Haug JS, Seidel CW, Piotrowski T.

Proc Natl Acad Sci U S A. 2014 Apr 8;111(14):E1383-92. doi: 10.1073/pnas.1402898111. Epub 2014 Mar 27. Erratum in: Proc Natl Acad Sci U S A. 2015 Nov 3;112(44):E6080.

21.

Functional genomic analysis of the periodic transcriptome in the developing Drosophila wing.

Liang L, Haug JS, Seidel CW, Gibson MC.

Dev Cell. 2014 Apr 14;29(1):112-27. doi: 10.1016/j.devcel.2014.02.018. Epub 2014 Mar 27.

22.

Hsp90 stress potentiates rapid cellular adaptation through induction of aneuploidy.

Chen G, Bradford WD, Seidel CW, Li R.

Nature. 2012 Jan 29;482(7384):246-50. doi: 10.1038/nature10795.

23.

Characterization of a highly conserved histone related protein, Ydl156w, and its functional associations using quantitative proteomic analyses.

Gilmore JM, Sardiu ME, Venkatesh S, Stutzman B, Peak A, Seidel CW, Workman JL, Florens L, Washburn MP.

Mol Cell Proteomics. 2012 Apr;11(4):M111.011544. doi: 10.1074/mcp.M111.011544. Epub 2011 Dec 22.

24.

Human mediator subunit MED26 functions as a docking site for transcription elongation factors.

Takahashi H, Parmely TJ, Sato S, Tomomori-Sato C, Banks CA, Kong SE, Szutorisz H, Swanson SK, Martin-Brown S, Washburn MP, Florens L, Seidel CW, Lin C, Smith ER, Shilatifard A, Conaway RC, Conaway JW.

Cell. 2011 Jul 8;146(1):92-104. doi: 10.1016/j.cell.2011.06.005.

25.

Cbk1 regulation of the RNA-binding protein Ssd1 integrates cell fate with translational control.

Jansen JM, Wanless AG, Seidel CW, Weiss EL.

Curr Biol. 2009 Dec 29;19(24):2114-20. doi: 10.1016/j.cub.2009.10.071. Epub 2009 Dec 3.

26.

Aneuploidy underlies rapid adaptive evolution of yeast cells deprived of a conserved cytokinesis motor.

Rancati G, Pavelka N, Fleharty B, Noll A, Trimble R, Walton K, Perera A, Staehling-Hampton K, Seidel CW, Li R.

Cell. 2008 Nov 28;135(5):879-93. doi: 10.1016/j.cell.2008.09.039.

27.

A network-based analysis of polyanion-binding proteins utilizing human protein arrays.

Salamat-Miller N, Fang J, Seidel CW, Assenov Y, Albrecht M, Middaugh CR.

J Biol Chem. 2007 Apr 6;282(14):10153-63. Epub 2007 Feb 2.

28.

A network-based analysis of polyanion-binding proteins utilizing yeast protein arrays.

Salamat-Miller N, Fang J, Seidel CW, Smalter AM, Assenov Y, Albrecht M, Middaugh CR.

Mol Cell Proteomics. 2006 Dec;5(12):2263-78. Epub 2006 Sep 18.

29.

Purification of a calcium dependent ribonuclease from Xenopus laevis.

Seidel CW, Peck LJ.

Nucleic Acids Res. 1994 Apr 25;22(8):1456-62.

30.

Kinetic control of 5 S RNA gene transcription.

Seidel CW, Peck LJ.

J Mol Biol. 1992 Oct 20;227(4):1009-18.

PMID:
1433283

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