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Items: 1 to 50 of 76

1.

Deletion of either the regulatory gene ara1 or metabolic gene xki1 in Trichoderma reesei leads to increased CAZyme gene expression on crude plant biomass.

Benocci T, Aguilar-Pontes MV, Kun RS, Lubbers RJM, Lail K, Wang M, Lipzen A, Ng V, Grigoriev IV, Seiboth B, Daly P, de Vries RP.

Biotechnol Biofuels. 2019 Apr 9;12:81. doi: 10.1186/s13068-019-1422-y. eCollection 2019.

2.

The Promoter Toolbox for Recombinant Gene Expression in Trichoderma reesei.

Fitz E, Wanka F, Seiboth B.

Front Bioeng Biotechnol. 2018 Oct 11;6:135. doi: 10.3389/fbioe.2018.00135. eCollection 2018. Review.

3.

ARA1 regulates not only l-arabinose but also d-galactose catabolism in Trichoderma reesei.

Benocci T, Aguilar-Pontes MV, Kun RS, Seiboth B, de Vries RP, Daly P.

FEBS Lett. 2018 Jan;592(1):60-70. doi: 10.1002/1873-3468.12932. Epub 2017 Dec 19.

4.

Genome sequencing and transcriptome analysis of Trichoderma reesei QM9978 strain reveals a distal chromosome translocation to be responsible for loss of vib1 expression and loss of cellulase induction.

Ivanova C, Ramoni J, Aouam T, Frischmann A, Seiboth B, Baker SE, Le Crom S, Lemoine S, Margeot A, Bidard F.

Biotechnol Biofuels. 2017 Sep 7;10:209. doi: 10.1186/s13068-017-0897-7. eCollection 2017.

5.

N-acetylglucosamine, the building block of chitin, inhibits growth of Neurospora crassa.

Gaderer R, Seidl-Seiboth V, de Vries RP, Seiboth B, Kappel L.

Fungal Genet Biol. 2017 Oct;107:1-11. doi: 10.1016/j.fgb.2017.07.005. Epub 2017 Jul 20.

6.

Regulators of plant biomass degradation in ascomycetous fungi.

Benocci T, Aguilar-Pontes MV, Zhou M, Seiboth B, de Vries RP.

Biotechnol Biofuels. 2017 Jun 12;10:152. doi: 10.1186/s13068-017-0841-x. eCollection 2017. Review.

7.

Molecular and catalytic properties of fungal extracellular cellobiose dehydrogenase produced in prokaryotic and eukaryotic expression systems.

Ma S, Preims M, Piumi F, Kappel L, Seiboth B, Record E, Kracher D, Ludwig R.

Microb Cell Fact. 2017 Feb 28;16(1):37. doi: 10.1186/s12934-017-0653-5.

8.

Trichoderma reesei xylanase 5 is defective in the reference strain QM6a but functional alleles are present in other wild-type strains.

Ramoni J, Marchetti-Deschmann M, Seidl-Seiboth V, Seiboth B.

Appl Microbiol Biotechnol. 2017 May;101(10):4139-4149. doi: 10.1007/s00253-017-8161-4. Epub 2017 Feb 22.

9.

Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus.

de Vries RP, Riley R, Wiebenga A, Aguilar-Osorio G, Amillis S, Uchima CA, Anderluh G, Asadollahi M, Askin M, Barry K, Battaglia E, Bayram Ö, Benocci T, Braus-Stromeyer SA, Caldana C, Cánovas D, Cerqueira GC, Chen F, Chen W, Choi C, Clum A, Dos Santos RA, Damásio AR, Diallinas G, Emri T, Fekete E, Flipphi M, Freyberg S, Gallo A, Gournas C, Habgood R, Hainaut M, Harispe ML, Henrissat B, Hildén KS, Hope R, Hossain A, Karabika E, Karaffa L, Karányi Z, Kraševec N, Kuo A, Kusch H, LaButti K, Lagendijk EL, Lapidus A, Levasseur A, Lindquist E, Lipzen A, Logrieco AF, MacCabe A, Mäkelä MR, Malavazi I, Melin P, Meyer V, Mielnichuk N, Miskei M, Molnár ÁP, Mulé G, Ngan CY, Orejas M, Orosz E, Ouedraogo JP, Overkamp KM, Park HS, Perrone G, Piumi F, Punt PJ, Ram AF, Ramón A, Rauscher S, Record E, Riaño-Pachón DM, Robert V, Röhrig J, Ruller R, Salamov A, Salih NS, Samson RA, Sándor E, Sanguinetti M, Schütze T, Sepčić K, Shelest E, Sherlock G, Sophianopoulou V, Squina FM, Sun H, Susca A, Todd RB, Tsang A, Unkles SE, van de Wiele N, van Rossen-Uffink D, Oliveira JV, Vesth TC, Visser J, Yu JH, Zhou M, Andersen MR, Archer DB, Baker SE, Benoit I, Brakhage AA, Braus GH, Fischer R, Frisvad JC, Goldman GH, Houbraken J, Oakley B, Pócsi I, Scazzocchio C, Seiboth B, vanKuyk PA, Wortman J, Dyer PS, Grigoriev IV.

Genome Biol. 2017 Feb 14;18(1):28. doi: 10.1186/s13059-017-1151-0.

10.

The relation between xyr1 overexpression in Trichoderma harzianum and sugarcane bagasse saccharification performance.

da Silva Delabona P, Rodrigues GN, Zubieta MP, Ramoni J, Codima CA, Lima DJ, Farinas CS, da Cruz Pradella JG, Seiboth B.

J Biotechnol. 2017 Mar 20;246:24-32. doi: 10.1016/j.jbiotec.2017.02.002. Epub 2017 Feb 10.

PMID:
28192217
11.

Functional characterization of the native swollenin from Trichoderma reesei: study of its possible role as C1 factor of enzymatic lignocellulose conversion.

Eibinger M, Sigl K, Sattelkow J, Ganner T, Ramoni J, Seiboth B, Plank H, Nidetzky B.

Biotechnol Biofuels. 2016 Aug 26;9(1):178. doi: 10.1186/s13068-016-0590-2. eCollection 2016.

12.

Cellulases and beyond: the first 70 years of the enzyme producer Trichoderma reesei.

Bischof RH, Ramoni J, Seiboth B.

Microb Cell Fact. 2016 Jun 10;15(1):106. doi: 10.1186/s12934-016-0507-6. Review.

13.

Restoration of female fertility in Trichoderma reesei QM6a provides the basis for inbreeding in this industrial cellulase producing fungus.

Linke R, Thallinger GG, Haarmann T, Eidner J, Schreiter M, Lorenz P, Seiboth B, Kubicek CP.

Biotechnol Biofuels. 2015 Sep 24;8:155. doi: 10.1186/s13068-015-0311-2. eCollection 2015.

14.

Erratum to: Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype.

Lichius A, Bidard F, Buchholz F, Le Crom S, Martin J, Schackwitz W, Austerlitz T, Grigoriev IV, Baker SE, Margeot A, Seiboth B, Kubicek CP.

BMC Genomics. 2015 Sep 22;16(1):725. doi: 10.1186/s12864-015-1917-2. No abstract available.

15.

L-Methionine repressible promoters for tuneable gene expression in Trichoderma reesei.

Bischof RH, Horejs J, Metz B, Gamauf C, Kubicek CP, Seiboth B.

Microb Cell Fact. 2015 Aug 14;14:120. doi: 10.1186/s12934-015-0308-3.

16.

Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype.

Lichius A, Bidard F, Buchholz F, Le Crom S, Martin J, Schackwitz W, Austerlitz T, Grigoriev IV, Baker SE, Margeot A, Seiboth B, Kubicek CP.

BMC Genomics. 2015 Apr 20;16:326. doi: 10.1186/s12864-015-1526-0. Erratum in: BMC Genomics. 2015;16(1):725.

17.

The ß-importin KAP8 (Pse1/Kap121) is required for nuclear import of the cellulase transcriptional regulator XYR1, asexual sporulation and stress resistance in Trichoderma reesei.

Ghassemi S, Lichius A, Bidard F, Lemoine S, Rossignol MN, Herold S, Seidl-Seiboth V, Seiboth B, Espeso EA, Margeot A, Kubicek CP.

Mol Microbiol. 2015 Apr;96(2):405-18. doi: 10.1111/mmi.12944. Epub 2015 Mar 4.

18.

Kinetic transcriptome analysis reveals an essentially intact induction system in a cellulase hyper-producer Trichoderma reesei strain.

Poggi-Parodi D, Bidard F, Pirayre A, Portnoy T, Blugeon C, Seiboth B, Kubicek CP, Le Crom S, Margeot A.

Biotechnol Biofuels. 2014 Dec 12;7(1):173. doi: 10.1186/s13068-014-0173-z. eCollection 2014.

19.

Nucleo-cytoplasmic shuttling dynamics of the transcriptional regulators XYR1 and CRE1 under conditions of cellulase and xylanase gene expression in Trichoderma reesei.

Lichius A, Seidl-Seiboth V, Seiboth B, Kubicek CP.

Mol Microbiol. 2014 Oct 10. doi: 10.1111/mmi.12824. [Epub ahead of print]

20.

Comparative analysis of the Trichoderma reesei transcriptome during growth on the cellulase inducing substrates wheat straw and lactose.

Bischof R, Fourtis L, Limbeck A, Gamauf C, Seiboth B, Kubicek CP.

Biotechnol Biofuels. 2013 Sep 9;6(1):127. doi: 10.1186/1754-6834-6-127.

21.

Systems analysis of lactose metabolism in Trichoderma reesei identifies a lactose permease that is essential for cellulase induction.

Ivanova C, Bååth JA, Seiboth B, Kubicek CP.

PLoS One. 2013 May 8;8(5):e62631. doi: 10.1371/journal.pone.0062631. Print 2013.

22.

A novel L-xylulose reductase essential for L-arabinose catabolism in Trichoderma reesei.

Metz B, Mojzita D, Herold S, Kubicek CP, Richard P, Seiboth B.

Biochemistry. 2013 Apr 9;52(14):2453-60. doi: 10.1021/bi301583u. Epub 2013 Mar 29.

23.

Functional analyses of Trichoderma reesei LAE1 reveal conserved and contrasting roles of this regulator.

Karimi-Aghcheh R, Bok JW, Phatale PA, Smith KM, Baker SE, Lichius A, Omann M, Zeilinger S, Seiboth B, Rhee C, Keller NP, Freitag M, Kubicek CP.

G3 (Bethesda). 2013 Feb;3(2):369-78. doi: 10.1534/g3.112.005140. Epub 2013 Feb 1.

24.

The intracellular galactoglycome in Trichoderma reesei during growth on lactose.

Karaffa L, Coulier L, Fekete E, Overkamp KM, Druzhinina IS, Mikus M, Seiboth B, Novák L, Punt PJ, Kubicek CP.

Appl Microbiol Biotechnol. 2013 Jun;97(12):5447-56. doi: 10.1007/s00253-012-4667-y. Epub 2013 Jan 9.

PMID:
23299458
25.

Xylanase gene transcription in Trichoderma reesei is triggered by different inducers representing different hemicellulosic pentose polymers.

Herold S, Bischof R, Metz B, Seiboth B, Kubicek CP.

Eukaryot Cell. 2013 Mar;12(3):390-8. doi: 10.1128/EC.00182-12. Epub 2013 Jan 4.

26.

Xylitol production by genetically engineered Trichoderma reesei strains using barley straw as feedstock.

Dashtban M, Kepka G, Seiboth B, Qin W.

Appl Biochem Biotechnol. 2013 Jan;169(2):554-69. doi: 10.1007/s12010-012-0008-y. Epub 2012 Dec 18.

PMID:
23247825
27.

Metabolic engineering of inducer formation for cellulase and hemicellulase gene expression in Trichoderma reesei.

Seiboth B, Herold S, Kubicek CP.

Subcell Biochem. 2012;64:367-90. doi: 10.1007/978-94-007-5055-5_18. Review.

PMID:
23080260
28.

L-xylo-3-hexulose reductase is the missing link in the oxidoreductive pathway for D-galactose catabolism in filamentous fungi.

Mojzita D, Herold S, Metz B, Seiboth B, Richard P.

J Biol Chem. 2012 Jul 27;287(31):26010-8. doi: 10.1074/jbc.M112.372755. Epub 2012 May 31.

29.

The putative protein methyltransferase LAE1 controls cellulase gene expression in Trichoderma reesei.

Seiboth B, Karimi RA, Phatale PA, Linke R, Hartl L, Sauer DG, Smith KM, Baker SE, Freitag M, Kubicek CP.

Mol Microbiol. 2012 Jun;84(6):1150-64. doi: 10.1111/j.1365-2958.2012.08083.x. Epub 2012 May 23.

30.

Identification of a permease gene involved in lactose utilisation in Aspergillus nidulans.

Fekete E, Karaffa L, Seiboth B, Fekete E, Kubicek CP, Flipphi M.

Fungal Genet Biol. 2012 Jun;49(6):415-25. doi: 10.1016/j.fgb.2012.03.001. Epub 2012 Mar 15.

PMID:
22445777
31.

D-Galactose uptake is nonfunctional in the conidiospores of Aspergillus niger.

Fekete E, de Vries RP, Seiboth B, vanKuyk PA, Sándor E, Fekete E, Metz B, Kubicek CP, Karaffa L.

FEMS Microbiol Lett. 2012 Apr;329(2):198-203. doi: 10.1111/j.1574-6968.2012.02524.x. Epub 2012 Feb 28.

32.

A versatile toolkit for high throughput functional genomics with Trichoderma reesei.

Schuster A, Bruno KS, Collett JR, Baker SE, Seiboth B, Kubicek CP, Schmoll M.

Biotechnol Biofuels. 2012 Jan 2;5(1):1. doi: 10.1186/1754-6834-5-1.

33.

A homologous production system for Trichoderma reesei secreted proteins in a cellulase-free background.

Uzbas F, Sezerman U, Hartl L, Kubicek CP, Seiboth B.

Appl Microbiol Biotechnol. 2012 Feb;93(4):1601-8. doi: 10.1007/s00253-011-3674-8. Epub 2011 Nov 13.

34.

Expression of biomass-degrading enzymes is a major event during conidium development in Trichoderma reesei.

Metz B, Seidl-Seiboth V, Haarmann T, Kopchinskiy A, Lorenz P, Seiboth B, Kubicek CP.

Eukaryot Cell. 2011 Nov;10(11):1527-35. doi: 10.1128/EC.05014-11. Epub 2011 Sep 2.

35.

The CRE1 carbon catabolite repressor of the fungus Trichoderma reesei: a master regulator of carbon assimilation.

Portnoy T, Margeot A, Linke R, Atanasova L, Fekete E, Sándor E, Hartl L, Karaffa L, Druzhinina IS, Seiboth B, Le Crom S, Kubicek CP.

BMC Genomics. 2011 May 27;12:269. doi: 10.1186/1471-2164-12-269.

36.

Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma.

Kubicek CP, Herrera-Estrella A, Seidl-Seiboth V, Martinez DA, Druzhinina IS, Thon M, Zeilinger S, Casas-Flores S, Horwitz BA, Mukherjee PK, Mukherjee M, Kredics L, Alcaraz LD, Aerts A, Antal Z, Atanasova L, Cervantes-Badillo MG, Challacombe J, Chertkov O, McCluskey K, Coulpier F, Deshpande N, von Döhren H, Ebbole DJ, Esquivel-Naranjo EU, Fekete E, Flipphi M, Glaser F, Gómez-Rodríguez EY, Gruber S, Han C, Henrissat B, Hermosa R, Hernández-Oñate M, Karaffa L, Kosti I, Le Crom S, Lindquist E, Lucas S, Lübeck M, Lübeck PS, Margeot A, Metz B, Misra M, Nevalainen H, Omann M, Packer N, Perrone G, Uresti-Rivera EE, Salamov A, Schmoll M, Seiboth B, Shapiro H, Sukno S, Tamayo-Ramos JA, Tisch D, Wiest A, Wilkinson HH, Zhang M, Coutinho PM, Kenerley CM, Monte E, Baker SE, Grigoriev IV.

Genome Biol. 2011;12(4):R40. doi: 10.1186/gb-2011-12-4-r40. Epub 2011 Apr 18.

37.

Fungal arabinan and L-arabinose metabolism.

Seiboth B, Metz B.

Appl Microbiol Biotechnol. 2011 Mar;89(6):1665-73. doi: 10.1007/s00253-010-3071-8. Epub 2011 Jan 7. Review.

38.

Differential regulation of the cellulase transcription factors XYR1, ACE2, and ACE1 in Trichoderma reesei strains producing high and low levels of cellulase.

Portnoy T, Margeot A, Seidl-Seiboth V, Le Crom S, Ben Chaabane F, Linke R, Seiboth B, Kubicek CP.

Eukaryot Cell. 2011 Feb;10(2):262-71. doi: 10.1128/EC.00208-10. Epub 2010 Dec 17.

39.

Use of a non-homologous end-joining-deficient strain (delta-ku70) of the biocontrol fungus Trichoderma virens to investigate the function of the laccase gene lcc1 in sclerotia degradation.

Catalano V, Vergara M, Hauzenberger JR, Seiboth B, Sarrocco S, Vannacci G, Kubicek CP, Seidl-Seiboth V.

Curr Genet. 2011 Feb;57(1):13-23. doi: 10.1007/s00294-010-0322-2. Epub 2010 Sep 26.

40.

Spatial and developmental differentiation of mannitol dehydrogenase and mannitol-1-phosphate dehydrogenase in Aspergillus niger.

Aguilar-Osorio G, Vankuyk PA, Seiboth B, Blom D, Solomon PS, Vinck A, Kindt F, Wösten HA, de Vries RP.

Eukaryot Cell. 2010 Sep;9(9):1398-402. doi: 10.1128/EC.00363-09. Epub 2010 Mar 19.

41.

A novel carbon source-dependent genetic transformation system for the versatile cell factory Hypocrea jecorina (anamorph Trichoderma reesei).

Guangtao Z, Seiboth B, Wen C, Yaohua Z, Xian L, Wang T.

FEMS Microbiol Lett. 2010 Feb;303(1):26-32. doi: 10.1111/j.1574-6968.2009.01851.x. Epub 2009 Nov 13.

42.

Heterologous expression of an Agaricus meleagris pyranose dehydrogenase-encoding gene in Aspergillus spp. and characterization of the recombinant enzyme.

Pisanelli I, Kujawa M, Gschnitzer D, Spadiut O, Seiboth B, Peterbauer C.

Appl Microbiol Biotechnol. 2010 Mar;86(2):599-606. doi: 10.1007/s00253-009-2308-x. Epub 2009 Nov 4.

PMID:
19888575
43.

Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing.

Le Crom S, Schackwitz W, Pennacchio L, Magnuson JK, Culley DE, Collett JR, Martin J, Druzhinina IS, Mathis H, Monot F, Seiboth B, Cherry B, Rey M, Berka R, Kubicek CP, Baker SE, Margeot A.

Proc Natl Acad Sci U S A. 2009 Sep 22;106(38):16151-6. doi: 10.1073/pnas.0905848106. Epub 2009 Sep 2.

44.

Molecular regulation of arabinan and L-arabinose metabolism in Hypocrea jecorina (Trichoderma reesei).

Akel E, Metz B, Seiboth B, Kubicek CP.

Eukaryot Cell. 2009 Dec;8(12):1837-44. doi: 10.1128/EC.00162-09. Epub 2009 Oct 2.

45.

Metabolic engineering strategies for the improvement of cellulase production by Hypocrea jecorina.

Kubicek CP, Mikus M, Schuster A, Schmoll M, Seiboth B.

Biotechnol Biofuels. 2009 Sep 1;2:19. doi: 10.1186/1754-6834-2-19.

46.

Post-genomic insights into the plant polysaccharide degradation potential of Aspergillus nidulans and comparison to Aspergillus niger and Aspergillus oryzae.

Coutinho PM, Andersen MR, Kolenova K, vanKuyk PA, Benoit I, Gruben BS, Trejo-Aguilar B, Visser H, van Solingen P, Pakula T, Seiboth B, Battaglia E, Aguilar-Osorio G, de Jong JF, Ohm RA, Aguilar M, Henrissat B, Nielsen J, Stålbrand H, de Vries RP.

Fungal Genet Biol. 2009 Mar;46 Suppl 1:S161-S169.

PMID:
19618505
47.

The Hypocrea jecorina (syn. Trichoderma reesei) lxr1 gene encodes a D-mannitol dehydrogenase and is not involved in L-arabinose catabolism.

Metz B, de Vries RP, Polak S, Seidl V, Seiboth B.

FEBS Lett. 2009 Apr 17;583(8):1309-13. doi: 10.1016/j.febslet.2009.03.027. Epub 2009 Mar 21.

48.

The 2008 update of the Aspergillus nidulans genome annotation: a community effort.

Wortman JR, Gilsenan JM, Joardar V, Deegan J, Clutterbuck J, Andersen MR, Archer D, Bencina M, Braus G, Coutinho P, von Döhren H, Doonan J, Driessen AJ, Durek P, Espeso E, Fekete E, Flipphi M, Estrada CG, Geysens S, Goldman G, de Groot PW, Hansen K, Harris SD, Heinekamp T, Helmstaedt K, Henrissat B, Hofmann G, Homan T, Horio T, Horiuchi H, James S, Jones M, Karaffa L, Karányi Z, Kato M, Keller N, Kelly DE, Kiel JA, Kim JM, van der Klei IJ, Klis FM, Kovalchuk A, Krasevec N, Kubicek CP, Liu B, Maccabe A, Meyer V, Mirabito P, Miskei M, Mos M, Mullins J, Nelson DR, Nielsen J, Oakley BR, Osmani SA, Pakula T, Paszewski A, Paulsen I, Pilsyk S, Pócsi I, Punt PJ, Ram AF, Ren Q, Robellet X, Robson G, Seiboth B, van Solingen P, Specht T, Sun J, Taheri-Talesh N, Takeshita N, Ussery D, vanKuyk PA, Visser H, van de Vondervoort PJ, de Vries RP, Walton J, Xiang X, Xiong Y, Zeng AP, Brandt BW, Cornell MJ, van den Hondel CA, Visser J, Oliver SG, Turner G.

Fungal Genet Biol. 2009 Mar;46 Suppl 1:S2-13. doi: 10.1016/j.fgb.2008.12.003. Epub 2008 Dec 25.

49.

Gene targeting in a nonhomologous end joining deficient Hypocrea jecorina.

Guangtao Z, Hartl L, Schuster A, Polak S, Schmoll M, Wang T, Seidl V, Seiboth B.

J Biotechnol. 2009 Jan 15;139(2):146-51. doi: 10.1016/j.jbiotec.2008.10.007. Epub 2008 Nov 5.

PMID:
19027803
50.

The Hypocrea jecorina (Trichoderma reesei) hypercellulolytic mutant RUT C30 lacks a 85 kb (29 gene-encoding) region of the wild-type genome.

Seidl V, Gamauf C, Druzhinina IS, Seiboth B, Hartl L, Kubicek CP.

BMC Genomics. 2008 Jul 11;9:327. doi: 10.1186/1471-2164-9-327.

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