PubMed

Bernstein DB, Dewhirst FE, Segre D.

Elife. 2019 Jun 13;8. pii: e39733. doi: 10.7554/eLife.39733. [Epub ahead of print]

Pacheco AR, Segrè D.

FEMS Microbiol Lett. 2019 Jun 11. pii: fnz125. doi: 10.1093/femsle/fnz125. [Epub ahead of print]

Thommes M, Wang T, Zhao Q, Paschalidis IC, Segrè D.

mSystems. 2019 Apr 9;4(2). pii: e00263-18. doi: 10.1128/mSystems.00263-18. eCollection 2019 Mar-Apr.

Succurro A, Segrè D, Ebenhöh O.

mSystems. 2019 Jan 15;4(1). pii: e00230-18. doi: 10.1128/mSystems.00230-18. eCollection 2019 Jan-Feb.

Pacheco AR, Moel M, Segrè D.

Nat Commun. 2019 Jan 9;10(1):103. doi: 10.1038/s41467-018-07946-9.

DiMucci D, Kon M, Segrè D.

mSystems. 2018 Oct 30;3(5). pii: e00181-18. doi: 10.1128/mSystems.00181-18. eCollection 2018 Sep-Oct.

Maoz BM, Herland A, FitzGerald EA, Grevesse T, Vidoudez C, Pacheco AR, Sheehy SP, Park TE, Dauth S, Mannix R, Budnik N, Shores K, Cho A, Nawroth JC, Segrè D, Budnik B, Ingber DE, Parker KK.

Nat Biotechnol. 2018 Oct;36(9):865-874. doi: 10.1038/nbt.4226. Epub 2018 Aug 20.

Goldford JE, Lu N, Bajić D, Estrela S, Tikhonov M, Sanchez-Gorostiaga A, Segrè D, Mehta P, Sanchez A.

Science. 2018 Aug 3;361(6401):469-474. doi: 10.1126/science.aat1168.

Zomorrodi AR, Segrè D.

Nat Commun. 2017 Nov 16;8(1):1563. doi: 10.1038/s41467-017-01407-5.

Reznik E, Christodoulou D, Goldford JE, Briars E, Sauer U, Segrè D, Noor E.

Cell Rep. 2017 Sep 12;20(11):2666-2677. doi: 10.1016/j.celrep.2017.08.066.

Goldford JE, Hartman H, Smith TF, Segrè D.

Cell. 2017 Mar 9;168(6):1126-1134.e9. doi: 10.1016/j.cell.2017.02.001. Epub 2017 Mar 2.

Jacobs C, Lambourne L, Xia Y, Segrè D.

PLoS One. 2017 Jan 20;12(1):e0170164. doi: 10.1371/journal.pone.0170164. eCollection 2017.

Zhao Q, Stettner AI, Reznik E, Paschalidis ICh, Segrè D.

Genome Biol. 2016 May 23;17(1):109. doi: 10.1186/s13059-016-0968-2.

Granger BR, Chang YC, Wang Y, DeLisi C, Segrè D, Hu Z.

PLoS Comput Biol. 2016 Apr 15;12(4):e1004875. doi: 10.1371/journal.pcbi.1004875. eCollection 2016 Apr.

Segre D, Pozzo M, Perinotti R, Roche B.

Tech Coloproctol. 2016 Apr;20(4):265-6. doi: 10.1007/s10151-016-1431-9. Epub 2016 Feb 5. No abstract available.

Zomorrodi AR, Segrè D.

J Mol Biol. 2016 Feb 27;428(5 Pt B):837-61. doi: 10.1016/j.jmb.2015.10.019. Epub 2015 Nov 11. Review.

Segre D, Pozzo M, Perinotti R, Roche B; Italian Society of Colorectal Surgery.

Tech Coloproctol. 2015 Oct;19(10):607-13. doi: 10.1007/s10151-015-1369-3. Epub 2015 Sep 16.

Chubiz LM, Granger BR, Segrè D, Harcombe WR.

Front Microbiol. 2015 Apr 14;6:271. doi: 10.3389/fmicb.2015.00271. eCollection 2015.

Sridhara V, Meyer AG, Rai P, Barrick JE, Ravikumar P, Segrè D, Wilke CO.

PLoS One. 2014 Dec 12;9(12):e114608. doi: 10.1371/journal.pone.0114608. eCollection 2014.

Brinsmade SR, Alexander EL, Livny J, Stettner AI, Segrè D, Rhee KY, Sonenshein AL.

Proc Natl Acad Sci U S A. 2014 Jun 3;111(22):8227-32. doi: 10.1073/pnas.1321308111. Epub 2014 May 19.

Harcombe WR, Riehl WJ, Dukovski I, Granger BR, Betts A, Lang AH, Bonilla G, Kar A, Leiby N, Mehta P, Marx CJ, Segrè D.

Cell Rep. 2014 May 22;7(4):1104-15. doi: 10.1016/j.celrep.2014.03.070. Epub 2014 May 1.

Gomes AL, Galagan JE, Segrè D.

PLoS One. 2013 Dec 13;8(12):e80775. doi: 10.1371/journal.pone.0080775. eCollection 2013.

Mazumdar V, Amar S, Segrè D.

PLoS One. 2013 Oct 30;8(10):e77617. doi: 10.1371/journal.pone.0077617. eCollection 2013.

Anton BP, Chang YC, Brown P, Choi HP, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, Mazumdar V, McGettrick M, Osmani L, Pokrzywa R, Rachlin J, Swaminathan R, Allen B, Housman G, Monahan C, Rochussen K, Tao K, Bhagwat AS, Brenner SE, Columbus L, de Crécy-Lagard V, Ferguson D, Fomenkov A, Gadda G, Morgan RD, Osterman AL, Rodionov DA, Rodionova IA, Rudd KE, Söll D, Spain J, Xu SY, Bateman A, Blumenthal RM, Bollinger JM, Chang WS, Ferrer M, Friedberg I, Galperin MY, Gobeill J, Haft D, Hunt J, Karp P, Klimke W, Krebs C, Macelis D, Madupu R, Martin MJ, Miller JH, O'Donovan C, Palsson B, Ruch P, Setterdahl A, Sutton G, Tate J, Yakunin A, Tchigvintsev D, Plata G, Hu J, Greiner R, Horn D, Sjölander K, Salzberg SL, Vitkup D, Letovsky S, Segrè D, DeLisi C, Roberts RJ, Steffen M, Kasif S.

PLoS Biol. 2013;11(8):e1001638. doi: 10.1371/journal.pbio.1001638. Epub 2013 Aug 27. No abstract available.

Reznik E, Mehta P, Segrè D.

PLoS Comput Biol. 2013;9(8):e1003195. doi: 10.1371/journal.pcbi.1003195. Epub 2013 Aug 29.

Reznik E, Chaudhary O, Segrè D.

FEBS Lett. 2013 Sep 2;587(17):2891-4. doi: 10.1016/j.febslet.2013.07.032. Epub 2013 Jul 23.

Stettner AI, Segrè D.

Proc Natl Acad Sci U S A. 2013 Jun 11;110(24):9629-30. doi: 10.1073/pnas.1307485110. Epub 2013 May 31. No abstract available.

Reznik E, Kaper TJ, Segrè D.

Chaos. 2013 Mar;23(1):013132. doi: 10.1063/1.4793573.

Spironelli C, Segrè D, Stegagno L, Angrilli A.

Psychol Med. 2014 Jan;44(1):111-6. doi: 10.1017/S0033291713000615. Epub 2013 Apr 3.

Reznik E, Yohe S, Segrè D.

Biol Direct. 2013 Mar 22;8:7. doi: 10.1186/1745-6150-8-7.

Collins SB, Reznik E, Segrè D.

PLoS Comput Biol. 2012;8(11):e1002781. doi: 10.1371/journal.pcbi.1002781. Epub 2012 Nov 29.

Byrne D, Dumitriu A, Segrè D.

BMC Syst Biol. 2012 Sep 26;6:127. doi: 10.1186/1752-0509-6-127.

Chiu HC, Marx CJ, Segrè D.

Proc Biol Sci. 2012 Oct 22;279(1745):4156-64. doi: 10.1098/rspb.2012.1449. Epub 2012 Aug 15.

Jacobs C, Segrè D.

Adv Exp Med Biol. 2012;751:53-78. doi: 10.1007/978-1-4614-3567-9_3. Review.

Liu B, Faller LL, Klitgord N, Mazumdar V, Ghodsi M, Sommer DD, Gibbons TR, Treangen TJ, Chang YC, Li S, Stine OC, Hasturk H, Kasif S, Segrè D, Pop M, Amar S.

PLoS One. 2012;7(6):e37919. doi: 10.1371/journal.pone.0037919. Epub 2012 Jun 4.

Beg QK, Zampieri M, Klitgord N, Collins SB, Altafini C, Serres MH, Segrè D.

Nucleic Acids Res. 2012 Aug;40(15):7132-49. doi: 10.1093/nar/gks467. Epub 2012 May 25.

Rosenbaum MA, Bar HY, Beg QK, Segrè D, Booth J, Cotta MA, Angenent LT.

PLoS One. 2012;7(2):e30827. doi: 10.1371/journal.pone.0030827. Epub 2012 Feb 1.

Zampieri M, Legname G, Segrè D, Altafini C.

Bioinformatics. 2011 Dec 15;27(24):3407-14. doi: 10.1093/bioinformatics/btr580. Epub 2011 Oct 20.

Chou HH, Chiu HC, Delaney NF, Segrè D, Marx CJ.

Science. 2011 Jun 3;332(6034):1190-2. doi: 10.1126/science.1203799.

Klitgord N, Segrè D.

Curr Opin Biotechnol. 2011 Aug;22(4):541-6. doi: 10.1016/j.copbio.2011.04.018. Epub 2011 May 16. Review.

Snitkin ES, Segrè D.

PLoS Genet. 2011 Feb 10;7(2):e1001294. doi: 10.1371/journal.pgen.1001294.

Schütte M, Skupin A, Segrè D, Ebenhöh O.

Chaos. 2010 Dec;20(4):045115. doi: 10.1063/1.3530440.

Klitgord N, Segrè D.

PLoS Comput Biol. 2010 Nov 18;6(11):e1001002. doi: 10.1371/journal.pcbi.1001002.

Roberts RJ, Chang YC, Hu Z, Rachlin JN, Anton BP, Pokrzywa RM, Choi HP, Faller LL, Guleria J, Housman G, Klitgord N, Mazumdar V, McGettrick MG, Osmani L, Swaminathan R, Tao KR, Letovsky S, Vitkup D, Segrè D, Salzberg SL, Delisi C, Steffen M, Kasif S.

Nucleic Acids Res. 2011 Jan;39(Database issue):D11-4. doi: 10.1093/nar/gkq1168. Epub 2010 Nov 21.

Rosenbaum MA, Bar HY, Beg QK, Segrè D, Booth J, Cotta MA, Angenent LT.

Bioresour Technol. 2011 Feb;102(3):2623-8. doi: 10.1016/j.biortech.2010.10.033. Epub 2010 Oct 12.

Reznik E, Segrè D.

J Theor Biol. 2010 Oct 21;266(4):536-49. doi: 10.1016/j.jtbi.2010.07.023. Epub 2010 Jul 29.

Segrè D, Marx CJ.

Chaos. 2010 Jun;20(2):026101. doi: 10.1063/1.3456057.

Riehl WJ, Krapivsky PL, Redner S, Segrè D.

PLoS Comput Biol. 2010 Apr 1;6(4):e1000725. doi: 10.1371/journal.pcbi.1000725.

Schütte M, Klitgord N, Segrè D, Ebenhöh O.

Genome Inform. 2010 Jan;22:156-66.

Klitgord N, Segrè D.

Genome Inform. 2010 Jan;22:41-55.