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Items: 42

1.

Genome size variation and species diversity in salamanders.

Sclavi B, Herrick J.

J Evol Biol. 2019 Mar;32(3):278-286. doi: 10.1111/jeb.13412. Epub 2019 Jan 13.

PMID:
30588701
2.

Subdiffusion of loci and cytoplasmic particles are different in compressed Escherichia coli cells.

Yu S, Sheats J, Cicuta P, Sclavi B, Cosentino Lagomarsino M, Dorfman KD.

Commun Biol. 2018 Oct 24;1:176. doi: 10.1038/s42003-018-0185-5. eCollection 2018.

3.

Comparative and phylogenetic analysis of a novel family of Enterobacteriaceae-associated genomic islands that share a conserved excision/integration module.

Piña-Iturbe A, Ulloa-Allendes D, Pardo-Roa C, Coronado-Arrázola I, Salazar-Echegarai FJ, Sclavi B, González PA, Bueno SM.

Sci Rep. 2018 Jul 6;8(1):10292. doi: 10.1038/s41598-018-28537-0.

4.

DnaA and LexA Proteins Regulate Transcription of the uvrB Gene in Escherichia coli: The Role of DnaA in the Control of the SOS Regulon.

Wurihan, Gezi, Brambilla E, Wang S, Sun H, Fan L, Shi Y, Sclavi B, Morigen.

Front Microbiol. 2018 Jun 18;9:1212. doi: 10.3389/fmicb.2018.01212. eCollection 2018.

5.

Bacterial-Chromatin Structural Proteins Regulate the Bimodal Expression of the Locus of Enterocyte Effacement (LEE) Pathogenicity Island in Enteropathogenic Escherichia coli.

Leh H, Khodr A, Bouger MC, Sclavi B, Rimsky S, Bury-Moné S.

MBio. 2017 Aug 8;8(4). pii: e00773-17. doi: 10.1128/mBio.00773-17.

6.

Role of growth rate on the orientational alignment of Escherichia coli in a slit.

Sheats J, Sclavi B, Cosentino Lagomarsino M, Cicuta P, Dorfman KD.

R Soc Open Sci. 2017 Jun 21;4(6):170463. doi: 10.1098/rsos.170463. eCollection 2017 Jun.

7.
8.

SOLEIL shining on the solution-state structure of biomacromolecules by synchrotron X-ray footprinting at the Metrology beamline.

Baud A, Aymé L, Gonnet F, Salard I, Gohon Y, Jolivet P, Brodolin K, Da Silva P, Giuliani A, Sclavi B, Chardot T, Mercère P, Roblin P, Daniel R.

J Synchrotron Radiat. 2017 May 1;24(Pt 3):576-585. doi: 10.1107/S1600577517002478. Epub 2017 Mar 24.

PMID:
28452748
9.

Stochasticity of gene expression as a motor of epigenetics in bacteria: from individual to collective behaviors.

Bury-Moné S, Sclavi B.

Res Microbiol. 2017 Jul - Aug;168(6):503-514. doi: 10.1016/j.resmic.2017.03.009. Epub 2017 Apr 18. Review.

PMID:
28427910
10.

Probing the solution structure of Factor H using hydroxyl radical protein footprinting and cross-linking.

Baud A, Gonnet F, Salard I, Le Mignon M, Giuliani A, Mercère P, Sclavi B, Daniel R.

Biochem J. 2016 Jun 15;473(12):1805-19. doi: 10.1042/BCJ20160225. Epub 2016 Apr 20.

PMID:
27099340
11.

Rapid and accurate detection of Escherichia coli growth by fluorescent pH-sensitive organic nanoparticles for high-throughput screening applications.

Si Y, Grazon C, Clavier G, Rieger J, Audibert JF, Sclavi B, Méallet-Renault R.

Biosens Bioelectron. 2016 Jan 15;75:320-7. doi: 10.1016/j.bios.2015.08.028. Epub 2015 Aug 15.

PMID:
26334591
12.

The nucleoid as a smart polymer.

Scolari VF, Sclavi B, Cosentino Lagomarsino M.

Front Microbiol. 2015 May 8;6:424. doi: 10.3389/fmicb.2015.00424. eCollection 2015. No abstract available.

13.

Gene regulation by H-NS as a function of growth conditions depends on chromosomal position in Escherichia coli.

Brambilla E, Sclavi B.

G3 (Bethesda). 2015 Feb 19;5(4):605-14. doi: 10.1534/g3.114.016139.

14.

Measuring bacterial adaptation dynamics at the single-cell level using a microfluidic chemostat and time-lapse fluorescence microscopy.

Long Z, Olliver A, Brambilla E, Sclavi B, Lagomarsino MC, Dorfman KD.

Analyst. 2014 Oct 21;139(20):5254-62. doi: 10.1039/c4an00877d. Epub 2014 Aug 19.

PMID:
25137302
15.

Bacterial nucleoid structure probed by active drag and resistive pulse sensing.

Thacker VV, Bromek K, Meijer B, Kotar J, Sclavi B, Lagomarsino MC, Keyser UF, Cicuta P.

Integr Biol (Camb). 2014 Feb;6(2):184-91. doi: 10.1039/c3ib40147b.

PMID:
24321999
16.

Effect of Rap1 binding on DNA distortion and potassium permanganate hypersensitivity.

Le Bihan YV, Matot B, Pietrement O, Giraud-Panis MJ, Gasparini S, Le Cam E, Gilson E, Sclavi B, Miron S, Le Du MH.

Acta Crystallogr D Biol Crystallogr. 2013 Mar;69(Pt 3):409-19. doi: 10.1107/S0907444912049311. Epub 2013 Feb 16.

PMID:
23519416
17.

Gene silencing and large-scale domain structure of the E. coli genome.

Zarei M, Sclavi B, Cosentino Lagomarsino M.

Mol Biosyst. 2013 Apr 5;9(4):758-67. doi: 10.1039/c3mb25364c.

PMID:
23412141
18.

Microfluidic chemostat for measuring single cell dynamics in bacteria.

Long Z, Nugent E, Javer A, Cicuta P, Sclavi B, Cosentino Lagomarsino M, Dorfman KD.

Lab Chip. 2013 Mar 7;13(5):947-54. doi: 10.1039/c2lc41196b. Epub 2013 Jan 18.

PMID:
23334753
19.

Temperature-dependence of the DnaA-DNA interaction and its effect on the autoregulation of dnaA expression.

Saggioro C, Olliver A, Sclavi B.

Biochem J. 2013 Jan 15;449(2):333-41. doi: 10.1042/BJ20120876.

PMID:
23092251
20.

Topological characterization of the DnaA-oriC complex using single-molecule nanomanipuation.

Zorman S, Seitz H, Sclavi B, Strick TR.

Nucleic Acids Res. 2012 Aug;40(15):7375-83. doi: 10.1093/nar/gks371. Epub 2012 May 11.

21.

DnaA and the timing of chromosome replication in Escherichia coli as a function of growth rate.

Grant MA, Saggioro C, Ferrari U, Bassetti B, Sclavi B, Cosentino Lagomarsino M.

BMC Syst Biol. 2011 Dec 21;5:201. doi: 10.1186/1752-0509-5-201.

22.

Gene clusters reflecting macrodomain structure respond to nucleoid perturbations.

Scolari VF, Bassetti B, Sclavi B, Lagomarsino MC.

Mol Biosyst. 2011 Mar;7(3):878-88. doi: 10.1039/c0mb00213e. Epub 2010 Dec 16.

PMID:
21165487
23.

DnaA-ATP acts as a molecular switch to control levels of ribonucleotide reductase expression in Escherichia coli.

Olliver A, Saggioro C, Herrick J, Sclavi B.

Mol Microbiol. 2010 Jun;76(6):1555-71. doi: 10.1111/j.1365-2958.2010.07185.x. Epub 2010 May 4.

24.

DNA melting by RNA polymerase at the T7A1 promoter precedes the rate-limiting step at 37 degrees C and results in the accumulation of an off-pathway intermediate.

Rogozina A, Zaychikov E, Buckle M, Heumann H, Sclavi B.

Nucleic Acids Res. 2009 Sep;37(16):5390-404. doi: 10.1093/nar/gkp560. Epub 2009 Jul 3.

25.

Time-resolved footprinting for the study of the structural dynamics of DNA-protein interactions.

Sclavi B.

Biochem Soc Trans. 2008 Aug;36(Pt 4):745-8. doi: 10.1042/BST0360745.

PMID:
18631151
26.

Differential methylation kinetics of individual target site strands by T4Dam DNA methyltransferase.

Zinoviev VV, Evdokimov AA, Malygin EG, Sclavi B, Buckle M, Hattman S.

Biol Chem. 2007 Nov;388(11):1199-207.

PMID:
17976013
27.

The multiple roles of CRP at the complex acs promoter depend on activation region 2 and IHF.

Sclavi B, Beatty CM, Thach DS, Fredericks CE, Buckle M, Wolfe AJ.

Mol Microbiol. 2007 Jul;65(2):425-40.

28.

Study of bacteriophage T4-encoded Dam DNA (adenine-N6)-methyltransferase binding with substrates by rapid laser UV cross-linking.

Evdokimov AA, Sclavi B, Zinoviev VV, Malygin EG, Hattman S, Buckle M.

J Biol Chem. 2007 Sep 7;282(36):26067-76. Epub 2007 Jul 13.

29.
30.

Real-time characterization of intermediates in the pathway to open complex formation by Escherichia coli RNA polymerase at the T7A1 promoter.

Sclavi B, Zaychikov E, Rogozina A, Walther F, Buckle M, Heumann H.

Proc Natl Acad Sci U S A. 2005 Mar 29;102(13):4706-11. Epub 2005 Feb 28.

31.

Bacteriophage T4Dam DNA-(adenine-N(6))-methyltransferase. Comparison of pre-steady state and single turnover methylation of 40-mer duplexes containing two (un)modified target sites.

Malygin EG, Sclavi B, Zinoviev VV, Evdokimov AA, Hattman S, Buckle M.

J Biol Chem. 2004 Nov 26;279(48):50012-8. Epub 2004 Sep 16.

32.

Phage T4 early promoters are resistant to inhibition by the anti-sigma factor AsiA.

Orsini G, Igonet S, Pène C, Sclavi B, Buckle M, Uzan M, Kolb A.

Mol Microbiol. 2004 May;52(4):1013-28.

33.

Mycobacterium tuberculosis Rv1395 is a class III transcriptional regulator of the AraC family involved in cytochrome P450 regulation.

Recchi C, Sclavi B, Rauzier J, Gicquel B, Reyrat JM.

J Biol Chem. 2003 Sep 5;278(36):33763-73. Epub 2003 Jun 25.

34.

Time-resolved synchrotron X-ray footprinting and its application to RNA folding.

Ralston CY, Sclavi B, Sullivan M, Deras ML, Woodson SA, Chance MR, Brenowitz M.

Methods Enzymol. 2000;317:353-68. No abstract available.

PMID:
10829290
35.

The Early Folding Intermediates of the Tetrahymena Ribozyme are Kinetically Trapped.

Ralston CY, Sclavi B, Brenowitz M, Sullivan M, Chance MR.

J Biomol Struct Dyn. 2000;17 Suppl 1:195-200.

PMID:
22607424
36.

Following the folding of RNA with time-resolved synchrotron X-ray footprinting.

Sclavi B, Woodson S, Sullivan M, Chance M, Brenowitz M.

Methods Enzymol. 1998;295:379-402.

PMID:
9750229
37.

RNA folding at millisecond intervals by synchrotron hydroxyl radical footprinting.

Sclavi B, Sullivan M, Chance MR, Brenowitz M, Woodson SA.

Science. 1998 Mar 20;279(5358):1940-3.

38.

Examining the conformational dynamics of macromolecules with time-resolved synchrotron X-ray 'footprinting'.

Chance MR, Sclavi B, Woodson SA, Brenowitz M.

Structure. 1997 Jul 15;5(7):865-9. No abstract available.

39.
40.
41.

Fractal-like patterns in DNA films, B form at 0% relative humidity, and antiheteronomous DNA: an IR study.

Sclavi B, Peticolas WL, Powell JW.

Biopolymers. 1994 Aug;34(8):1105-13.

PMID:
8075390
42.

Vibrational dynamics of wet-spun films of the NaDNA-netropsin complex: A Raman and infrared study.

Lee SA, Sclavi B, Powell JW, Williamson W 3rd, Rupprecht A.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1993 Sep;48(3):2240-2245. No abstract available.

PMID:
9960843

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