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Items: 31

1.

The Comparative Toxicogenomics Database: update 2019.

Davis AP, Grondin CJ, Johnson RJ, Sciaky D, McMorran R, Wiegers J, Wiegers TC, Mattingly CJ.

Nucleic Acids Res. 2019 Jan 8;47(D1):D948-D954. doi: 10.1093/nar/gky868.

2.

Chemical-Induced Phenotypes at CTD Help Inform the Predisease State and Construct Adverse Outcome Pathways.

Davis AP, Wiegers TC, Wiegers J, Johnson RJ, Sciaky D, Grondin CJ, Mattingly CJ.

Toxicol Sci. 2018 Sep 1;165(1):145-156. doi: 10.1093/toxsci/kfy131.

3.

The Comparative Toxicogenomics Database: update 2017.

Davis AP, Grondin CJ, Johnson RJ, Sciaky D, King BL, McMorran R, Wiegers J, Wiegers TC, Mattingly CJ.

Nucleic Acids Res. 2017 Jan 4;45(D1):D972-D978. doi: 10.1093/nar/gkw838. Epub 2016 Sep 19.

4.

Generating Gene Ontology-Disease Inferences to Explore Mechanisms of Human Disease at the Comparative Toxicogenomics Database.

Davis AP, Wiegers TC, King BL, Wiegers J, Grondin CJ, Sciaky D, Johnson RJ, Mattingly CJ.

PLoS One. 2016 May 12;11(5):e0155530. doi: 10.1371/journal.pone.0155530. eCollection 2016.

5.

BioCreative V CDR task corpus: a resource for chemical disease relation extraction.

Li J, Sun Y, Johnson RJ, Sciaky D, Wei CH, Leaman R, Davis AP, Mattingly CJ, Wiegers TC, Lu Z.

Database (Oxford). 2016 May 9;2016. pii: baw068. doi: 10.1093/database/baw068. Print 2016.

6.

The Comparative Toxicogenomics Database's 10th year anniversary: update 2015.

Davis AP, Grondin CJ, Lennon-Hopkins K, Saraceni-Richards C, Sciaky D, King BL, Wiegers TC, Mattingly CJ.

Nucleic Acids Res. 2015 Jan;43(Database issue):D914-20. doi: 10.1093/nar/gku935. Epub 2014 Oct 17.

7.

A CTD-Pfizer collaboration: manual curation of 88,000 scientific articles text mined for drug-disease and drug-phenotype interactions.

Davis AP, Wiegers TC, Roberts PM, King BL, Lay JM, Lennon-Hopkins K, Sciaky D, Johnson R, Keating H, Greene N, Hernandez R, McConnell KJ, Enayetallah AE, Mattingly CJ.

Database (Oxford). 2013 Nov 28;2013:bat080. doi: 10.1093/database/bat080. Print 2013.

8.

Text mining effectively scores and ranks the literature for improving chemical-gene-disease curation at the comparative toxicogenomics database.

Davis AP, Wiegers TC, Johnson RJ, Lay JM, Lennon-Hopkins K, Saraceni-Richards C, Sciaky D, Murphy CG, Mattingly CJ.

PLoS One. 2013 Apr 17;8(4):e58201. doi: 10.1371/journal.pone.0058201. Print 2013.

9.

Targeted journal curation as a method to improve data currency at the Comparative Toxicogenomics Database.

Davis AP, Johnson RJ, Lennon-Hopkins K, Sciaky D, Rosenstein MC, Wiegers TC, Mattingly CJ.

Database (Oxford). 2012 Dec 6;2012:bas051. doi: 10.1093/database/bas051. Print 2012.

10.

The Comparative Toxicogenomics Database: update 2013.

Davis AP, Murphy CG, Johnson R, Lay JM, Lennon-Hopkins K, Saraceni-Richards C, Sciaky D, King BL, Rosenstein MC, Wiegers TC, Mattingly CJ.

Nucleic Acids Res. 2013 Jan;41(Database issue):D1104-14. doi: 10.1093/nar/gks994. Epub 2012 Oct 23.

11.
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14.

Cytokine-mediated PGE2 expression in human colonic fibroblasts.

Kim EC, Zhu Y, Andersen V, Sciaky D, Cao HJ, Meekins H, Smith TJ, Lance P.

Am J Physiol. 1998 Oct;275(4):C988-94. doi: 10.1152/ajpcell.1998.275.4.C988.

PMID:
9755052
15.

Hepatocyte nuclear factor-1alpha regulates transcription of the guanylin gene.

Hochman JA, Sciaky D, Whitaker TL, Hawkins JA, Cohen MB.

Am J Physiol. 1997 Oct;273(4):G833-41. doi: 10.1152/ajpgi.1997.273.4.G833.

PMID:
9357824
16.

Leukoregulin induction of prostaglandin-endoperoxide H synthase-2 in human orbital fibroblasts. An in vitro model for connective tissue inflammation.

Wang HS, Cao HJ, Winn VD, Rezanka LJ, Frobert Y, Evans CH, Sciaky D, Young DA, Smith TJ.

J Biol Chem. 1996 Sep 13;271(37):22718-28.

17.

Mapping of guanylin to murine chromosome 4 and human chromosome 1p34-p35.

Sciaky D, Jenkins NA, Gilbert DJ, Copeland NG, Sonoda G, Testa JR, Cohen MB.

Genomics. 1995 Mar 20;26(2):427-9. No abstract available.

PMID:
7601480
18.

Genomic sequence of the murine guanylin gene.

Sciaky D, Kosiba JL, Cohen MB.

Genomics. 1994 Dec;24(3):583-7.

PMID:
7713512
19.

Neoplastic progression in crown gall in tobacco without elevated auxin levels.

Pengelly WL, Vijayaraghavan SJ, Sciaky D.

Planta. 1986 Nov;169(3):454-61. doi: 10.1007/BF00392144.

PMID:
24232660
20.

Structure and synthesis of histopine, a histidine derivative produced by crown gall tumors.

Bates HA, Kaushal A, Deng PN, Sciaky D.

Biochemistry. 1984 Jul 3;23(14):3287-90.

PMID:
6466642
22.

Information content of the adenovirus-2 genome.

Roberts RJ, Sciaky D, Gelinas RE, Jiang BD, Yen CE, Kelly MM, Bullock PA, Parsons BL, O'Neill KE, Gingeras TR.

Cold Spring Harb Symp Quant Biol. 1983;47 Pt 2:1025-37. No abstract available.

PMID:
6305570
23.
24.

Nucleotide sequences from the adenovirus-2 genome.

Gingeras TR, Sciaky D, Gelinas RE, Bing-Dong J, Yen CE, Kelly MM, Bullock PA, Parsons BL, O'Neill KE, Roberts RJ.

J Biol Chem. 1982 Nov 25;257(22):13475-91.

25.

Computer programs for the assembly of DNA sequences.

Gingeras TR, Milazzo JP, Sciaky D, Roberts RJ.

Nucleic Acids Res. 1979 Sep 25;7(2):529-45.

26.

A specific endonuclease from Bacillus caldolyticus.

Bingham AH, Atkinson T, Sciaky D, Roberts RJ.

Nucleic Acids Res. 1978 Oct;5(10):3457-67.

27.

Fingerprints of Agrobacterium Ti plasmids.

Sciaky D, Montoya AL, Chilton MD.

Plasmid. 1978 Feb;1(2):238-53. No abstract available.

PMID:
748949
28.

Stable incorporation of plasmid DNA into higher plant cells: the molecular basis of crown gall tumorigenesis.

Chilton MD, Drummond MH, Merio DJ, Sciaky D, Montoya AL, Gordon MP, Nester EW.

Cell. 1977 Jun;11(2):263-71. No abstract available.

PMID:
890735
29.

The incorporation and expression of Agrobacterium plasmid genes in crown gall tumors.

Nester EW, Merlo DJ, Drummond MH, Sciaky D, Montoya AL, Chilton MD.

Basic Life Sci. 1977;9:181-96. No abstract available.

PMID:
921688
30.

Octopine and nopaline metabolism in Agrobacterium tumefaciens and crown gall tumor cells: role of plasmid genes.

Montoya AL, Chilton MD, Gordon MP, Sciaky D, Nester EW.

J Bacteriol. 1977 Jan;129(1):101-7.

31.

Azide mutagnesis. In vitro studies.

Kleinhofs A, Kleinschmidt M, Sciaky D, Von Broembsen S.

Mutat Res. 1975 Sep;29(3):497-9. No abstract available.

PMID:
809706

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